Wall clock time and date at job start Mon Mar 30 2020 02:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46826 * 2 1 4 4 C 1.50701 * 109.46865 * 240.00120 * 2 1 3 5 5 H 1.08005 * 119.99565 * 239.99924 * 4 2 1 6 6 C 1.37868 * 120.00153 * 60.00234 * 4 2 1 7 7 N 1.31513 * 120.00312 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47210 * 59.99772 * 8 6 4 10 10 H 1.48505 * 109.47405 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47426 * 299.99869 * 8 6 4 12 12 N 1.46897 * 109.46947 * 119.99940 * 2 1 3 13 13 C 1.44309 * 111.00124 * 172.57747 * 12 2 1 14 14 C 1.53985 * 108.33075 * 221.34891 * 13 12 2 15 15 C 1.45876 * 112.65420 * 278.62317 * 14 13 12 16 16 C 1.54515 * 111.68108 * 61.49612 * 15 14 13 17 17 C 1.50535 * 108.85246 * 282.73880 * 16 15 14 18 18 H 1.09000 * 108.79242 * 330.87082 * 17 16 15 19 19 C 1.53006 * 108.78779 * 212.53822 * 17 16 15 20 20 C 1.47945 * 111.00176 * 300.00252 * 12 2 1 21 21 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 22 22 H 1.08991 * 109.47144 * 299.99848 * 1 2 3 23 23 H 1.09001 * 109.47045 * 60.00182 * 1 2 3 24 24 H 0.96998 * 120.00473 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.68931 * 101.63620 * 13 12 2 26 26 H 1.08998 * 109.68773 * 341.05607 * 13 12 2 27 27 H 1.09004 * 108.84574 * 157.79913 * 14 13 12 28 28 H 1.08999 * 108.84434 * 39.43958 * 14 13 12 29 29 H 1.08999 * 109.03571 * 182.06347 * 15 14 13 30 30 H 1.08999 * 109.03442 * 300.92783 * 15 14 13 31 31 H 1.08998 * 109.57403 * 42.55011 * 16 15 14 32 32 H 1.08998 * 109.57302 * 162.79881 * 16 15 14 33 33 H 1.08996 * 109.47285 * 60.00355 * 19 17 16 34 34 H 1.09001 * 109.46743 * 179.97438 * 19 17 16 35 35 H 1.08997 * 109.47204 * 299.99845 * 19 17 16 36 36 H 1.08996 * 108.71505 * 71.18266 * 20 12 2 37 37 H 1.09003 * 108.71041 * 313.16798 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2205 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 3.4516 -0.8644 1.1491 14 6 3.7883 -2.2760 1.6638 15 6 3.8155 -2.3513 3.1204 16 6 2.4411 -2.0049 3.7356 17 6 2.2565 -0.5112 3.7039 18 1 3.2352 -0.0351 3.7646 19 6 1.4286 -0.0910 4.9201 20 6 1.5452 -0.0217 2.4298 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7082 1.1609 -3.4844 25 1 3.9335 -0.1183 1.7810 26 1 3.7986 -0.7556 0.1215 27 1 4.7650 -2.5679 1.2778 28 1 3.0406 -2.9751 1.2890 29 1 4.0942 -3.3619 3.4190 30 1 4.5609 -1.6519 3.4987 31 1 1.6509 -2.4828 3.1567 32 1 2.4030 -2.3576 4.7662 33 1 1.9508 -0.3794 5.8323 34 1 1.2886 0.9899 4.9083 35 1 0.4571 -0.5841 4.8862 36 1 0.4754 -0.2012 2.5356 37 1 1.7088 1.0512 2.3283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306503834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:20 Heat of formation + Delta-G solvation = -13.318101 kcal Electronic energy + Delta-G solvation = -15102.621878 eV Core-core repulsion = 12879.157347 eV Total energy + Delta-G solvation = -2223.464531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.74040 -35.08819 -33.14482 -32.29357 -28.95047 -27.13966 -25.66457 -24.18785 -23.29372 -20.09857 -19.89450 -18.55742 -16.34154 -15.38263 -14.84541 -14.45487 -14.30535 -13.58362 -12.97858 -12.79261 -12.39097 -12.33174 -12.15805 -11.86123 -11.50536 -10.95736 -10.85376 -10.67795 -10.59019 -10.31537 -10.16973 -10.10831 -10.04439 -9.83657 -9.66559 -9.44120 -8.77863 -8.38842 -6.94768 -5.97867 -4.01875 3.33734 3.38082 3.41063 4.42793 4.96478 5.06117 5.23083 5.33209 5.39734 5.60566 5.64536 5.87338 5.92251 6.02282 6.12902 6.15389 6.29039 6.31737 6.44935 6.49350 6.57739 6.66225 6.73997 6.83627 6.92024 6.93682 7.08399 7.14729 7.25289 7.61333 7.87066 7.89316 8.34599 8.46764 8.72037 9.06316 9.62674 11.08777 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041580 B = 0.009418 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.238287 B = 2972.196870 C = 3474.896016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.215 3.785 3 H -0.005 1.005 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.543 5.543 13 C 0.067 3.933 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.104 4.104 17 C -0.091 4.091 18 H 0.058 0.942 19 C -0.144 4.144 20 C 0.070 3.930 21 H 0.033 0.967 22 H 0.006 0.994 23 H 0.083 0.917 24 H 0.260 0.740 25 H 0.018 0.982 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 -3.032 10.526 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.110 3.890 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.268 5.268 13 C -0.062 4.062 14 C -0.154 4.154 15 C -0.146 4.146 16 C -0.141 4.141 17 C -0.110 4.110 18 H 0.077 0.923 19 C -0.202 4.202 20 C -0.058 4.058 21 H 0.052 0.948 22 H 0.025 0.975 23 H 0.101 0.899 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.587 -3.347 10.374 11.203 hybrid contribution 0.601 0.431 -0.850 1.127 sum 3.189 -2.916 9.523 10.458 Atomic orbital electron populations 1.21806 0.97921 0.99463 0.99709 1.19252 0.92275 0.91768 0.85725 0.98746 1.21154 1.30921 1.12286 0.89798 0.91769 1.24932 0.95261 0.95087 0.98978 1.69888 1.36882 1.23060 1.23439 0.86605 0.79063 0.79786 0.82201 1.20247 1.21408 1.20368 1.60807 1.10999 1.52969 1.01986 1.21730 0.88997 0.94021 1.01443 1.20515 1.00445 0.99438 0.94995 1.20539 0.96886 1.00039 0.97125 1.21340 0.98064 0.95414 0.99317 1.20977 0.98865 0.96547 0.94641 0.92314 1.21884 1.00141 1.00909 0.97229 1.22345 0.99123 0.94991 0.89347 0.94819 0.97526 0.89885 0.92986 0.96412 0.89376 0.93577 0.91303 0.93339 0.93390 0.90806 0.93158 0.93122 0.93150 0.92687 0.91836 0.96448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.74 37.16 0.32 -2.94 16 2 C 0.22 5.52 2.04 -68.86 -0.14 5.38 16 3 H -0.01 -0.14 8.10 -51.93 -0.42 -0.56 16 4 C -0.50 -13.78 7.37 -34.44 -0.25 -14.03 16 5 H 0.06 1.75 6.73 -52.48 -0.35 1.39 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.54 -11.81 3.89 -228.04 -0.89 -12.69 16 13 C 0.07 1.35 4.87 -4.70 -0.02 1.33 16 14 C -0.12 -1.99 5.37 -29.59 -0.16 -2.15 16 15 C -0.11 -1.59 5.34 -29.31 -0.16 -1.75 16 16 C -0.10 -1.53 5.13 -27.17 -0.14 -1.67 16 17 C -0.09 -1.40 2.19 -91.37 -0.20 -1.60 16 18 H 0.06 0.91 6.66 -51.93 -0.35 0.57 16 19 C -0.14 -1.83 8.79 37.16 0.33 -1.50 16 20 C 0.07 1.32 4.07 -2.77 -0.01 1.31 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.01 0.13 6.66 -51.93 -0.35 -0.21 16 23 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.34 6.79 -51.93 -0.35 -0.01 16 26 H 0.09 1.99 5.74 -51.93 -0.30 1.69 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.68 7.59 -51.93 -0.39 0.28 16 31 H 0.07 1.22 7.78 -51.93 -0.40 0.82 16 32 H 0.05 0.64 7.70 -51.93 -0.40 0.24 16 33 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.21 6.76 -51.93 -0.35 0.86 16 37 H 0.02 0.34 7.99 -51.93 -0.41 -0.07 16 LS Contribution 275.00 15.07 4.14 4.14 Total: -1.00 -27.79 275.00 -8.14 -35.93 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.48 Total: -2.64 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.53 Total: -16.09 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.26 Total: -37.74 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.79 -8.14 -35.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306503834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.613 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds