Wall clock time and date at job start Mon Mar 30 2020 02:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46826 * 2 1 4 4 C 1.50701 * 109.46865 * 240.00120 * 2 1 3 5 5 H 1.08005 * 119.99565 * 239.99924 * 4 2 1 6 6 C 1.37868 * 120.00153 * 60.00234 * 4 2 1 7 7 N 1.31513 * 120.00312 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47210 * 59.99772 * 8 6 4 10 10 H 1.48505 * 109.47405 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47426 * 299.99869 * 8 6 4 12 12 N 1.46897 * 109.46947 * 119.99940 * 2 1 3 13 13 C 1.44309 * 111.00124 * 172.57747 * 12 2 1 14 14 C 1.53985 * 108.33075 * 221.34891 * 13 12 2 15 15 C 1.45876 * 112.65420 * 278.62317 * 14 13 12 16 16 C 1.54515 * 111.68108 * 61.49612 * 15 14 13 17 17 C 1.50535 * 108.85246 * 282.73880 * 16 15 14 18 18 H 1.09000 * 108.79242 * 330.87082 * 17 16 15 19 19 C 1.53006 * 108.78779 * 212.53822 * 17 16 15 20 20 C 1.47945 * 111.00176 * 300.00252 * 12 2 1 21 21 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 22 22 H 1.08991 * 109.47144 * 299.99848 * 1 2 3 23 23 H 1.09001 * 109.47045 * 60.00182 * 1 2 3 24 24 H 0.96998 * 120.00473 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.68931 * 101.63620 * 13 12 2 26 26 H 1.08998 * 109.68773 * 341.05607 * 13 12 2 27 27 H 1.09004 * 108.84574 * 157.79913 * 14 13 12 28 28 H 1.08999 * 108.84434 * 39.43958 * 14 13 12 29 29 H 1.08999 * 109.03571 * 182.06347 * 15 14 13 30 30 H 1.08999 * 109.03442 * 300.92783 * 15 14 13 31 31 H 1.08998 * 109.57403 * 42.55011 * 16 15 14 32 32 H 1.08998 * 109.57302 * 162.79881 * 16 15 14 33 33 H 1.08996 * 109.47285 * 60.00355 * 19 17 16 34 34 H 1.09001 * 109.46743 * 179.97438 * 19 17 16 35 35 H 1.08997 * 109.47204 * 299.99845 * 19 17 16 36 36 H 1.08996 * 108.71505 * 71.18266 * 20 12 2 37 37 H 1.09003 * 108.71041 * 313.16798 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2205 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 3.4516 -0.8644 1.1491 14 6 3.7883 -2.2760 1.6638 15 6 3.8155 -2.3513 3.1204 16 6 2.4411 -2.0049 3.7356 17 6 2.2565 -0.5112 3.7039 18 1 3.2352 -0.0351 3.7646 19 6 1.4286 -0.0910 4.9201 20 6 1.5452 -0.0217 2.4298 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7082 1.1609 -3.4844 25 1 3.9335 -0.1183 1.7810 26 1 3.7986 -0.7556 0.1215 27 1 4.7650 -2.5679 1.2778 28 1 3.0406 -2.9751 1.2890 29 1 4.0942 -3.3619 3.4190 30 1 4.5609 -1.6519 3.4987 31 1 1.6509 -2.4828 3.1567 32 1 2.4030 -2.3576 4.7662 33 1 1.9508 -0.3794 5.8323 34 1 1.2886 0.9899 4.9083 35 1 0.4571 -0.5841 4.8862 36 1 0.4754 -0.2012 2.5356 37 1 1.7088 1.0512 2.3283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306503834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:20 Heat of formation + Delta-G solvation = -29.117457 kcal Electronic energy + Delta-G solvation = -15103.306989 eV Core-core repulsion = 12879.157347 eV Total energy + Delta-G solvation = -2224.149642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24474 -36.78359 -34.47536 -34.24300 -30.83819 -28.55641 -27.42306 -25.92359 -24.75102 -21.92249 -21.21761 -20.07434 -18.39883 -17.17017 -16.37241 -16.07345 -15.83041 -15.09355 -14.67485 -14.41375 -13.91599 -13.70454 -13.57664 -13.37164 -12.92953 -12.85877 -12.55606 -12.43428 -12.35928 -12.03291 -11.99872 -11.73858 -11.38881 -11.18984 -11.12683 -10.98243 -10.81795 -10.50510 -8.74299 -8.10728 -6.22027 1.41878 1.43905 1.51379 2.42151 3.16594 3.36630 3.81825 4.05314 4.13345 4.29440 4.34487 4.52054 4.66616 4.73670 4.83274 4.87354 4.92868 4.96320 4.99814 5.05147 5.08472 5.18765 5.23457 5.29103 5.38695 5.45491 5.51663 5.57203 5.61465 5.69934 5.74016 5.87320 6.28498 6.54568 6.85372 6.99152 7.46723 8.95258 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041580 B = 0.009418 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.238287 B = 2972.196870 C = 3474.896016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.219 3.781 3 H -0.045 1.045 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.545 5.545 13 C 0.066 3.934 14 C -0.105 4.105 15 C -0.108 4.108 16 C -0.101 4.101 17 C -0.086 4.086 18 H 0.059 0.941 19 C -0.139 4.139 20 C 0.068 3.932 21 H 0.030 0.970 22 H 0.025 0.975 23 H 0.058 0.942 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.674 -4.314 11.968 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.112 3.888 3 H -0.028 1.028 4 C -0.554 4.554 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.269 5.269 13 C -0.063 4.063 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.139 4.139 17 C -0.105 4.105 18 H 0.077 0.923 19 C -0.197 4.197 20 C -0.059 4.059 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 3.406 -4.639 11.836 13.161 hybrid contribution 0.353 0.870 -1.271 1.580 sum 3.759 -3.769 10.565 11.830 Atomic orbital electron populations 1.21611 0.97550 0.99021 0.99405 1.19068 0.92560 0.89817 0.87351 1.02753 1.21401 1.30933 1.12256 0.90827 0.92046 1.25736 0.95434 0.95791 1.01963 1.70023 1.37818 1.24298 1.24066 0.85582 0.78735 0.78685 0.78458 1.19667 1.20995 1.19614 1.60822 1.11966 1.52399 1.01750 1.21746 0.88061 0.96459 1.00004 1.20421 1.00482 0.96409 0.97045 1.20528 0.97253 1.01827 0.94917 1.21336 0.97351 0.94470 1.00715 1.20949 0.98853 0.97234 0.93475 0.92250 1.21849 1.00053 1.01015 0.96737 1.22460 0.99485 0.94047 0.89936 0.95093 0.95644 0.92314 0.92974 0.95717 0.92452 0.92155 0.93137 0.90979 0.92262 0.92846 0.90220 0.90688 0.93120 0.92439 0.92177 0.98014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.74 71.98 0.63 -5.39 16 2 C 0.22 11.59 2.04 44.17 0.09 11.68 16 3 H -0.04 -2.68 8.10 -2.39 -0.02 -2.70 16 4 C -0.52 -28.92 7.37 25.60 0.19 -28.74 16 5 H 0.06 3.40 6.73 -2.91 -0.02 3.38 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.25 11.32 21.44 0.24 -54.01 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.54 -24.00 3.89 -875.37 -3.40 -27.41 16 13 C 0.07 2.68 4.87 87.12 0.42 3.10 16 14 C -0.11 -3.47 5.37 28.74 0.15 -3.32 16 15 C -0.11 -2.83 5.34 28.93 0.15 -2.68 16 16 C -0.10 -2.68 5.13 30.31 0.16 -2.53 16 17 C -0.09 -2.46 2.19 -11.28 -0.02 -2.48 16 18 H 0.06 1.70 6.66 -2.39 -0.02 1.68 16 19 C -0.14 -3.12 8.79 71.98 0.63 -2.49 16 20 C 0.07 2.56 4.07 86.41 0.35 2.91 16 21 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.02 1.15 6.66 -2.39 -0.02 1.13 16 23 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.02 0.95 6.79 -2.39 -0.02 0.93 16 26 H 0.06 2.66 5.74 -2.39 -0.01 2.65 16 27 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.46 7.59 -2.39 -0.02 1.44 16 31 H 0.05 1.66 7.78 -2.39 -0.02 1.64 16 32 H 0.08 1.68 7.70 -2.39 -0.02 1.66 16 33 H 0.07 1.35 8.07 -2.39 -0.02 1.34 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 2.27 6.76 -2.39 -0.02 2.25 16 37 H 0.00 0.06 7.99 -2.39 -0.02 0.04 16 Total: -1.00 -60.57 275.00 3.08 -57.49 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.01 Total: 6.56 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 3.20 Total: -28.96 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -3.16 Total: -81.41 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -60.57 3.08 -57.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306503834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.369 kcal (2) G-P(sol) polarization free energy of solvation -60.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds