Wall clock time and date at job start Mon Mar 30 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47568 * 239.99680 * 2 1 3 5 5 C 1.53001 * 109.47129 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47097 * 60.00602 * 5 4 2 7 7 C 1.53006 * 109.46698 * 299.99748 * 6 5 4 8 8 H 1.09004 * 109.47155 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47200 * 300.00230 * 7 6 5 10 10 C 1.53000 * 109.47238 * 59.99898 * 7 6 5 11 11 N 1.46502 * 109.46942 * 179.97438 * 10 7 6 12 12 C 1.46499 * 119.99903 * 245.35751 * 11 10 7 13 13 C 1.36935 * 119.99972 * 65.36011 * 11 10 7 14 14 H 1.07999 * 120.00197 * 5.19752 * 13 11 10 15 15 C 1.38813 * 120.00121 * 185.18938 * 13 11 10 16 16 N 1.31620 * 119.99856 * 25.03955 * 15 13 11 17 17 Si 1.86797 * 120.00169 * 205.04038 * 15 13 11 18 18 H 1.48494 * 109.47384 * 90.00045 * 17 15 13 19 19 H 1.48503 * 109.46924 * 210.00409 * 17 15 13 20 20 H 1.48496 * 109.47078 * 329.99849 * 17 15 13 21 21 H 1.09000 * 109.46709 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46611 * 60.00399 * 1 2 3 23 23 H 1.09002 * 109.46968 * 300.00318 * 1 2 3 24 24 H 1.09000 * 109.47194 * 299.99811 * 4 2 1 25 25 H 1.09004 * 109.47096 * 59.99879 * 4 2 1 26 26 H 1.09002 * 109.47043 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.47174 * 300.00125 * 5 4 2 28 28 H 1.08992 * 109.47219 * 59.98921 * 6 5 4 29 29 H 1.09000 * 109.47128 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47575 * 69.46608 * 9 7 6 31 31 H 1.08995 * 109.47150 * 189.47481 * 9 7 6 32 32 H 1.09004 * 109.46859 * 309.46877 * 9 7 6 33 33 H 1.09000 * 109.46815 * 60.00115 * 10 7 6 34 34 H 1.09002 * 109.47366 * 356.20836 * 12 11 10 35 35 H 1.09006 * 109.47012 * 116.20753 * 12 11 10 36 36 H 1.09000 * 109.47333 * 236.20928 * 12 11 10 37 37 H 0.96999 * 120.00269 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0001 7 6 3.5705 -0.7203 1.2491 8 1 3.9345 -1.2336 2.1392 9 6 4.0799 0.7224 1.2488 10 6 2.0405 -0.7208 1.2493 11 7 1.5521 -0.0307 2.4458 12 6 0.8096 -0.7728 3.4676 13 6 1.7896 1.3080 2.6089 14 1 2.2625 1.8728 1.8191 15 6 1.4225 1.9393 3.7894 16 7 1.3168 1.2441 4.9021 17 14 1.0783 3.7752 3.7989 18 1 -0.3604 4.0107 3.5167 19 1 1.4197 4.3359 5.1310 20 1 1.9022 4.4387 2.7568 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.6769 -1.7490 -1.2491 25 1 1.6768 -0.2075 -2.1392 26 1 3.9335 -1.2349 -2.1391 27 1 3.9331 0.3071 -1.2496 28 1 3.7176 -2.4693 0.0002 29 1 5.1706 -1.4408 0.0000 30 1 3.5849 1.2825 0.4554 31 1 3.8613 1.1852 2.2111 32 1 5.1567 0.7275 1.0796 33 1 1.6776 -1.7486 1.2496 34 1 0.6618 -1.8002 3.1351 35 1 1.3738 -0.7703 4.4003 36 1 -0.1593 -0.2999 3.6279 37 1 1.0606 1.6853 5.7271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306693904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:28 Heat of formation + Delta-G solvation = 8.413834 kcal Electronic energy + Delta-G solvation = -15583.027968 eV Core-core repulsion = 13360.505805 eV Total energy + Delta-G solvation = -2222.522163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.06724 -34.69811 -32.43079 -31.27080 -29.34622 -26.50377 -25.67628 -25.25350 -22.40269 -20.77209 -20.16256 -18.06417 -16.42160 -15.25988 -14.38859 -14.02029 -13.89723 -13.47470 -13.15833 -12.88781 -12.24814 -11.83708 -11.71303 -11.55126 -11.30165 -11.04505 -10.87072 -10.78664 -10.57255 -10.45888 -10.26268 -10.12554 -9.92498 -9.62794 -9.54739 -9.25573 -8.95732 -8.34468 -6.72947 -5.57991 -2.92576 3.45315 3.52996 3.53937 4.60126 5.19425 5.29312 5.31960 5.51031 5.68153 5.79909 5.89170 6.01460 6.04039 6.10400 6.17597 6.29943 6.34118 6.43681 6.47441 6.53350 6.62642 6.64674 6.76169 6.80991 6.85258 6.98938 7.13337 7.20885 7.30129 7.49023 7.51092 7.88293 7.95463 8.47215 9.34695 10.03058 10.46821 11.41672 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034954 B = 0.011447 C = 0.011324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.857878 B = 2445.467961 C = 2472.012481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.112 4.112 7 C -0.099 4.099 8 H 0.059 0.941 9 C -0.147 4.147 10 C 0.191 3.809 11 N -0.597 5.597 12 C 0.153 3.847 13 C -0.237 4.237 14 H 0.085 0.915 15 C -0.008 4.008 16 N -0.904 5.904 17 Si 0.886 3.114 18 H -0.292 1.292 19 H -0.296 1.296 20 H -0.282 1.282 21 H 0.037 0.963 22 H 0.034 0.966 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.022 0.978 33 H 0.047 0.953 34 H -0.002 1.002 35 H 0.062 0.938 36 H 0.015 0.985 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -4.254 -9.451 10.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.121 4.121 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.120 4.120 8 H 0.077 0.923 9 C -0.204 4.204 10 C 0.083 3.917 11 N -0.319 5.319 12 C 0.009 3.991 13 C -0.366 4.366 14 H 0.103 0.897 15 C -0.205 4.205 16 N -0.551 5.551 17 Si 0.717 3.283 18 H -0.219 1.219 19 H -0.223 1.223 20 H -0.207 1.207 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.017 0.983 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.155 -4.206 -9.252 10.389 hybrid contribution -0.225 1.018 0.088 1.046 sum 1.931 -3.187 -9.165 9.893 Atomic orbital electron populations 1.21653 0.95884 1.00226 1.01269 1.21535 0.95398 1.00690 0.94457 0.90748 1.21591 0.95144 1.00158 0.98013 1.21523 0.96081 1.00755 0.97093 1.21604 0.99213 0.98716 0.95527 1.21568 0.98197 0.96491 0.95714 0.92276 1.22225 0.97141 0.96686 1.04364 1.20288 0.90938 0.93789 0.86699 1.44081 1.62513 1.06749 1.18552 1.21067 0.95551 0.89555 0.92968 1.19353 1.33998 0.83828 0.99400 0.89723 1.24681 1.03346 0.97169 0.95301 1.70158 1.52394 1.34403 0.98117 0.86488 0.78447 0.86675 0.76663 1.21930 1.22252 1.20705 0.94396 0.94702 0.91088 0.92853 0.93101 0.93334 0.91976 0.92999 0.93146 0.93334 0.88922 0.95851 0.93436 0.98314 0.92020 0.96682 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.04 37.16 0.34 -2.06 16 2 C -0.10 -1.83 1.72 -90.62 -0.16 -1.98 16 3 H 0.07 1.49 5.18 -51.93 -0.27 1.22 16 4 C -0.11 -1.67 5.20 -26.73 -0.14 -1.81 16 5 C -0.12 -1.68 5.65 -26.73 -0.15 -1.83 16 6 C -0.11 -1.73 5.44 -26.73 -0.15 -1.87 16 7 C -0.10 -1.86 2.91 -90.62 -0.26 -2.13 16 8 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 9 C -0.15 -2.87 6.87 37.16 0.26 -2.62 16 10 C 0.19 3.84 2.00 -67.93 -0.14 3.71 16 11 N -0.60 -14.40 2.12 -173.48 -0.37 -14.76 16 12 C 0.15 3.78 9.11 59.85 0.55 4.33 16 13 C -0.24 -6.17 6.52 -15.06 -0.10 -6.26 16 14 H 0.09 2.16 4.74 -52.49 -0.25 1.91 16 15 C -0.01 -0.22 5.13 -17.43 -0.09 -0.31 16 16 N -0.90 -26.15 10.39 55.49 0.58 -25.58 16 17 Si 0.89 21.90 29.62 -169.99 -5.04 16.87 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 1.49 7.51 -51.93 -0.39 1.10 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.92 6.65 -51.93 -0.35 0.58 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.92 4.46 -51.93 -0.23 0.69 16 31 H 0.09 2.13 5.51 -51.93 -0.29 1.85 16 32 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 34 H 0.00 -0.04 7.55 -51.93 -0.39 -0.43 16 35 H 0.06 1.68 6.48 -51.93 -0.34 1.35 16 36 H 0.01 0.39 7.89 -51.93 -0.41 -0.02 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 268.14 15.07 4.04 4.04 Total: -1.00 -27.47 268.14 -7.07 -34.54 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.24 Total: -2.26 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.04 Total: -12.84 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.21 Total: -40.34 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.04 Total: 16.87 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.47 -7.07 -34.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306693904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.949 kcal (2) G-P(sol) polarization free energy of solvation -27.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds