Wall clock time and date at job start Mon Mar 30 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46773 * 2 1 4 4 C 1.52996 * 109.46981 * 120.00222 * 2 1 3 5 5 C 1.53008 * 109.46936 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.46980 * 299.99932 * 5 4 2 7 7 C 1.52997 * 109.47329 * 59.99868 * 6 5 4 8 8 H 1.09000 * 109.47552 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47032 * 60.00105 * 7 6 5 10 10 C 1.52995 * 109.47366 * 300.00004 * 7 6 5 11 11 N 1.46496 * 109.47470 * 179.97438 * 10 7 6 12 12 C 1.46507 * 120.00071 * 113.81375 * 11 10 7 13 13 C 1.36941 * 120.00372 * 293.81745 * 11 10 7 14 14 H 1.08001 * 119.99523 * 349.77625 * 13 11 10 15 15 C 1.38804 * 120.00200 * 169.77698 * 13 11 10 16 16 N 1.31623 * 120.00449 * 329.24605 * 15 13 11 17 17 Si 1.86803 * 120.00109 * 149.24640 * 15 13 11 18 18 H 1.48503 * 109.47362 * 270.00311 * 17 15 13 19 19 H 1.48495 * 109.47521 * 149.99652 * 17 15 13 20 20 H 1.48505 * 109.46637 * 29.99862 * 17 15 13 21 21 H 1.09006 * 109.47001 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47392 * 299.99919 * 1 2 3 23 23 H 1.08998 * 109.46942 * 60.00392 * 1 2 3 24 24 H 1.08997 * 109.47548 * 60.00253 * 4 2 1 25 25 H 1.08998 * 109.46942 * 300.00134 * 4 2 1 26 26 H 1.08997 * 109.46531 * 179.97438 * 5 4 2 27 27 H 1.08997 * 109.47024 * 59.99652 * 5 4 2 28 28 H 1.09006 * 109.47013 * 300.00006 * 6 5 4 29 29 H 1.09000 * 109.47098 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.46974 * 291.86944 * 9 7 6 31 31 H 1.09001 * 109.47352 * 51.87212 * 9 7 6 32 32 H 1.08996 * 109.47024 * 171.87363 * 9 7 6 33 33 H 1.09006 * 109.47163 * 299.99977 * 10 7 6 34 34 H 1.09001 * 109.46587 * 275.46043 * 12 11 10 35 35 H 1.08996 * 109.46931 * 35.45646 * 12 11 10 36 36 H 1.08998 * 109.47492 * 155.46356 * 12 11 10 37 37 H 0.97005 * 119.99299 * 357.77950 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0003 7 6 3.5705 -0.7203 -1.2489 8 1 3.9345 -1.2336 -2.1390 9 6 4.0800 0.7224 -1.2486 10 6 2.0405 -0.7209 -1.2493 11 7 1.5522 -0.0298 -2.4451 12 6 0.8255 -0.7747 -3.4763 13 6 1.7749 1.3126 -2.5992 14 1 2.1603 1.8941 -1.7747 15 6 1.5054 1.9258 -3.8149 16 7 1.6281 1.2471 -4.9360 17 14 0.9684 3.7144 -3.8601 18 1 -0.5124 3.7890 -3.7766 19 1 1.4247 4.3365 -5.1289 20 1 1.5661 4.4398 -2.7103 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6767 -1.7489 1.2492 25 1 1.6766 -0.2075 2.1391 26 1 3.9333 -1.2342 2.1397 27 1 3.9330 0.3071 1.2497 28 1 3.7175 -2.4694 0.0001 29 1 5.1705 -1.4407 0.0003 30 1 3.6025 1.2761 -0.4403 31 1 5.1602 0.7262 -1.1031 32 1 3.8401 1.1926 -2.2022 33 1 1.6775 -1.7487 -1.2495 34 1 1.5375 -1.2425 -4.1562 35 1 0.2135 -1.5440 -3.0054 36 1 0.1849 -0.0919 -4.0345 37 1 1.9379 0.3281 -4.9150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306693906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:31 Heat of formation + Delta-G solvation = 7.634276 kcal Electronic energy + Delta-G solvation = -15624.792240 eV Core-core repulsion = 13402.236272 eV Total energy + Delta-G solvation = -2222.555968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.12867 -35.06408 -32.47692 -31.31549 -29.29581 -26.42142 -25.71944 -25.40085 -22.21435 -20.81597 -20.17892 -18.24257 -16.94127 -15.18838 -14.44766 -14.06561 -13.82242 -13.51719 -13.21498 -12.87342 -12.54150 -12.03860 -11.86228 -11.67796 -11.35589 -11.12116 -10.94867 -10.57976 -10.54221 -10.43586 -10.25509 -10.02793 -9.96924 -9.68001 -9.40004 -9.34850 -9.08531 -8.14000 -6.82517 -5.97435 -2.93582 3.56193 3.57995 3.73937 4.66915 5.12346 5.24437 5.28722 5.46873 5.60469 5.74428 5.84032 5.97016 6.00290 6.05962 6.12570 6.24323 6.28954 6.39483 6.44298 6.50081 6.55637 6.59763 6.60829 6.72882 6.80233 6.90138 7.01626 7.09501 7.17960 7.25372 7.28889 7.52412 8.05871 8.66578 9.22420 10.00382 10.37661 11.33837 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035037 B = 0.011559 C = 0.011318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.964442 B = 2421.830766 C = 2473.389035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.112 4.112 7 C -0.098 4.098 8 H 0.055 0.945 9 C -0.145 4.145 10 C 0.194 3.806 11 N -0.601 5.601 12 C 0.129 3.871 13 C -0.337 4.337 14 H 0.074 0.926 15 C -0.032 4.032 16 N -0.926 5.926 17 Si 1.056 2.944 18 H -0.296 1.296 19 H -0.293 1.293 20 H -0.294 1.294 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.001 0.999 35 H 0.008 0.992 36 H 0.068 0.932 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -3.945 9.900 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.119 4.119 8 H 0.073 0.927 9 C -0.202 4.202 10 C 0.085 3.915 11 N -0.323 5.323 12 C -0.016 4.016 13 C -0.465 4.465 14 H 0.092 0.908 15 C -0.232 4.232 16 N -0.569 5.569 17 Si 0.887 3.113 18 H -0.224 1.224 19 H -0.220 1.220 20 H -0.221 1.221 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.019 0.981 35 H 0.027 0.973 36 H 0.087 0.913 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.859 -2.681 8.869 9.305 hybrid contribution 0.589 -1.285 1.035 1.752 sum 1.448 -3.966 9.904 10.767 Atomic orbital electron populations 1.21651 0.95890 1.00132 1.01333 1.21481 0.95361 1.00762 0.94241 0.90606 1.21592 0.95163 1.00118 0.98040 1.21518 0.96069 1.00792 0.97051 1.21601 0.99241 0.98659 0.95559 1.21531 0.98147 0.96633 0.95560 0.92681 1.22177 0.96902 0.96501 1.04588 1.20215 0.90867 0.93516 0.86856 1.44052 1.63070 1.06434 1.18784 1.21156 0.94412 0.94683 0.91362 1.20059 1.43917 0.83592 0.98966 0.90806 1.25493 1.01072 1.05449 0.91203 1.70780 1.46163 1.12799 1.27119 0.83615 0.76687 0.76045 0.74938 1.22423 1.22001 1.22067 0.94506 0.94615 0.91072 0.92905 0.93023 0.93282 0.91937 0.93063 0.93131 0.93391 0.96035 0.88772 0.93723 0.98095 0.97316 0.91328 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.04 37.16 0.34 -2.05 16 2 C -0.10 -1.81 1.71 -90.62 -0.15 -1.96 16 3 H 0.08 1.54 5.07 -51.93 -0.26 1.28 16 4 C -0.11 -1.69 5.20 -26.73 -0.14 -1.83 16 5 C -0.12 -1.71 5.65 -26.73 -0.15 -1.86 16 6 C -0.11 -1.76 5.44 -26.74 -0.15 -1.91 16 7 C -0.10 -1.88 2.91 -90.62 -0.26 -2.15 16 8 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 9 C -0.15 -2.91 6.96 37.16 0.26 -2.65 16 10 C 0.19 3.93 2.00 -67.93 -0.14 3.79 16 11 N -0.60 -14.40 2.11 -173.48 -0.37 -14.76 16 12 C 0.13 3.10 8.77 59.85 0.53 3.62 16 13 C -0.34 -8.79 6.15 -15.06 -0.09 -8.89 16 14 H 0.07 1.93 5.06 -52.49 -0.27 1.66 16 15 C -0.03 -0.88 4.69 -17.43 -0.08 -0.96 16 16 N -0.93 -27.43 12.33 55.49 0.68 -26.75 16 17 Si 1.06 25.33 30.01 -169.99 -5.10 20.23 16 18 H -0.30 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.48 7.47 -51.93 -0.39 1.09 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.95 6.62 -51.93 -0.34 0.60 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.94 4.51 -51.93 -0.23 0.71 16 31 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.09 2.25 5.50 -51.93 -0.29 1.96 16 33 H 0.04 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.00 0.03 7.14 -51.93 -0.37 -0.34 16 35 H 0.01 0.18 7.99 -51.93 -0.41 -0.24 16 36 H 0.07 1.81 6.23 -51.93 -0.32 1.48 16 37 H 0.27 8.06 5.75 -40.82 -0.23 7.82 16 LS Contribution 266.72 15.07 4.02 4.02 Total: -1.00 -27.85 266.72 -6.94 -34.79 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.13 Total: -0.68 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.04 Total: -16.84 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.32 Total: -41.51 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.10 Total: 20.23 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.85 -6.94 -34.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306693906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.420 kcal (2) G-P(sol) polarization free energy of solvation -27.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds