Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47119 * 2 1 4 4 C 1.50706 * 109.46956 * 240.00429 * 2 1 3 5 5 H 1.07994 * 120.00474 * 267.55112 * 4 2 1 6 6 C 1.37883 * 119.99733 * 87.55106 * 4 2 1 7 7 N 1.31512 * 120.00059 * 351.72993 * 6 4 2 8 8 Si 1.86800 * 119.99883 * 171.73863 * 6 4 2 9 9 H 1.48497 * 109.46872 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47282 * 119.99908 * 8 6 4 11 11 H 1.48503 * 109.46646 * 240.00139 * 8 6 4 12 12 N 1.46903 * 109.47571 * 120.00757 * 2 1 3 13 13 C 1.48535 * 110.99653 * 302.74231 * 12 2 1 14 14 C 1.54933 * 103.22315 * 200.27925 * 13 12 2 15 15 H 1.09001 * 110.72487 * 279.05446 * 14 13 12 16 16 C 1.53002 * 110.72237 * 155.77513 * 14 13 12 17 17 C 1.54591 * 102.92709 * 37.41638 * 14 13 12 18 18 C 1.47901 * 111.00043 * 185.34589 * 12 2 1 19 19 C 1.52999 * 109.91766 * 265.19397 * 18 12 2 20 20 C 1.52998 * 109.91467 * 26.49083 * 18 12 2 21 21 H 1.08999 * 109.46718 * 297.46943 * 1 2 3 22 22 H 1.08995 * 109.47204 * 57.46915 * 1 2 3 23 23 H 1.09005 * 109.46858 * 177.47091 * 1 2 3 24 24 H 0.97004 * 119.99834 * 4.00272 * 7 6 4 25 25 H 1.09003 * 110.66917 * 318.71486 * 13 12 2 26 26 H 1.08999 * 110.66291 * 81.84327 * 13 12 2 27 27 H 1.09005 * 109.47047 * 61.44976 * 16 14 13 28 28 H 1.08995 * 109.47253 * 181.45095 * 16 14 13 29 29 H 1.09004 * 109.46917 * 301.45005 * 16 14 13 30 30 H 1.08998 * 110.31008 * 96.95423 * 17 14 13 31 31 H 1.08997 * 110.31098 * 219.13009 * 17 14 13 32 32 H 1.09003 * 109.46648 * 66.53349 * 19 18 12 33 33 H 1.08998 * 109.47056 * 186.52589 * 19 18 12 34 34 H 1.08995 * 109.46960 * 306.53050 * 19 18 12 35 35 H 1.08999 * 109.47623 * 52.73298 * 20 18 12 36 36 H 1.09007 * 109.46964 * 172.73059 * 20 18 12 37 37 H 1.09003 * 109.47502 * 292.72294 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.2500 -1.7674 -1.1929 6 6 2.2140 -0.0105 -2.4046 7 7 1.7983 1.2335 -2.4997 8 14 3.0504 -0.8296 -3.8603 9 1 3.4214 -2.2214 -3.4991 10 1 2.1211 -0.8493 -5.0184 11 1 4.2740 -0.0691 -4.2202 12 7 2.0198 -0.6926 1.1993 13 6 1.4901 -0.0586 2.4337 14 6 2.4771 -0.5354 3.5286 15 1 2.2292 -1.5443 3.8586 16 6 2.4849 0.4359 4.7107 17 6 3.8392 -0.5183 2.7976 18 6 3.4926 -0.6019 1.2995 19 6 4.1345 -1.8473 0.6847 20 6 3.9876 0.6538 0.5791 21 1 -0.3633 0.4740 0.9118 22 1 -0.3633 0.5526 -0.8664 23 1 -0.3633 -1.0267 -0.0454 24 1 1.4166 1.6778 -1.7264 25 1 1.5080 1.0278 2.3463 26 1 0.4809 -0.4121 2.6451 27 1 1.4906 0.4745 5.1558 28 1 3.2036 0.0954 5.4561 29 1 2.7660 1.4298 4.3624 30 1 4.3718 0.4083 3.0116 31 1 4.4393 -1.3780 3.0956 32 1 3.9462 -1.8607 -0.3888 33 1 5.2094 -1.8285 0.8648 34 1 3.7053 -2.7397 1.1401 35 1 3.4456 1.5234 0.9507 36 1 5.0537 0.7833 0.7657 37 1 3.8164 0.5494 -0.4923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306858971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = -26.655413 kcal Electronic energy + Delta-G solvation = -15497.204438 eV Core-core repulsion = 13273.161558 eV Total energy + Delta-G solvation = -2224.042880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87985 -36.31262 -34.06653 -33.40478 -29.92157 -28.21733 -27.67995 -26.63068 -25.53568 -22.41147 -20.98483 -19.85762 -18.35235 -16.97853 -16.46549 -15.67967 -15.46069 -15.16620 -14.38576 -14.04906 -13.97287 -13.67301 -13.60549 -13.35985 -12.92777 -12.89517 -12.59942 -12.44466 -12.29275 -12.16812 -11.93345 -11.82542 -11.69777 -11.47472 -11.30649 -11.06330 -10.61742 -10.21503 -8.98448 -8.48505 -6.15303 1.53438 1.60309 1.76886 2.58600 3.21993 3.39186 3.76418 3.85650 4.07606 4.29297 4.43353 4.53932 4.59441 4.64829 4.71138 4.75052 4.78512 4.83406 4.88959 4.91083 4.99538 5.06073 5.13678 5.15960 5.19458 5.28084 5.30509 5.46568 5.49144 5.63851 5.72754 6.10891 6.19709 6.52443 6.63655 6.85253 7.59255 8.87775 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040899 B = 0.011144 C = 0.009867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.444578 B = 2511.898207 C = 2837.058344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.184 3.816 3 H -0.011 1.011 4 C -0.560 4.560 5 H 0.048 0.952 6 C -0.027 4.027 7 N -0.942 5.942 8 Si 1.104 2.896 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.512 5.512 13 C 0.035 3.965 14 C -0.089 4.089 15 H 0.083 0.917 16 C -0.134 4.134 17 C -0.115 4.115 18 C 0.101 3.899 19 C -0.123 4.123 20 C -0.157 4.157 21 H 0.037 0.963 22 H 0.025 0.975 23 H 0.041 0.959 24 H 0.256 0.744 25 H 0.019 0.981 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.058 0.942 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 -3.156 11.290 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 H 0.007 0.993 4 C -0.599 4.599 5 H 0.067 0.933 6 C -0.225 4.225 7 N -0.580 5.580 8 Si 0.928 3.072 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.236 5.236 13 C -0.093 4.093 14 C -0.108 4.108 15 H 0.102 0.898 16 C -0.192 4.192 17 C -0.153 4.153 18 C 0.011 3.989 19 C -0.181 4.181 20 C -0.216 4.216 21 H 0.056 0.944 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.229 -3.479 9.659 11.104 hybrid contribution -0.597 1.020 1.152 1.650 sum 3.632 -2.459 10.811 11.667 Atomic orbital electron populations 1.21776 0.98440 0.99674 0.98162 1.19514 0.91448 0.92056 0.89305 0.99318 1.21996 1.45466 0.96416 0.96050 0.93334 1.26845 0.96113 0.96155 1.03424 1.70865 1.40946 1.13999 1.32239 0.83088 0.75886 0.75073 0.73127 1.19670 1.21224 1.20922 1.64871 1.05656 1.51602 1.01485 1.23270 0.99152 0.95675 0.91222 1.22039 0.94030 1.00246 0.94480 0.89823 1.21718 1.02526 0.98013 0.96898 1.22638 0.97501 1.02415 0.92715 1.21560 0.88257 0.94393 0.94675 1.21807 0.98680 0.96380 1.01202 1.22319 0.99605 0.97173 1.02454 0.94367 0.95575 0.93985 0.93372 0.96242 0.91078 0.91873 0.90844 0.93521 0.91331 0.89917 0.93421 0.91986 0.92973 0.95745 0.92315 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.96 71.98 0.64 -5.16 16 2 C 0.18 9.19 1.04 44.17 0.05 9.24 16 3 H -0.01 -0.59 4.69 -2.39 -0.01 -0.60 16 4 C -0.56 -30.36 5.32 25.60 0.14 -30.22 16 5 H 0.05 2.71 6.53 -2.91 -0.02 2.69 16 6 C -0.03 -1.52 4.77 84.66 0.40 -1.12 16 7 N -0.94 -56.49 13.62 21.45 0.29 -56.20 16 8 Si 1.10 50.58 29.91 68.60 2.05 52.63 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.51 -21.85 4.75 -813.58 -3.87 -25.72 16 13 C 0.03 1.25 4.72 86.65 0.41 1.66 16 14 C -0.09 -2.51 3.66 -9.59 -0.04 -2.54 16 15 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 16 C -0.13 -2.96 9.16 71.98 0.66 -2.30 16 17 C -0.11 -3.41 5.79 31.47 0.18 -3.23 16 18 C 0.10 3.87 0.72 3.67 0.00 3.87 16 19 C -0.12 -4.60 8.22 71.98 0.59 -4.01 16 20 C -0.16 -6.63 6.88 71.98 0.50 -6.13 16 21 H 0.04 1.59 6.74 -2.39 -0.02 1.58 16 22 H 0.03 1.31 7.74 -2.39 -0.02 1.29 16 23 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.26 15.61 6.34 -92.71 -0.59 15.02 16 25 H 0.02 0.74 7.93 -2.39 -0.02 0.72 16 26 H 0.07 2.47 7.60 -2.39 -0.02 2.45 16 27 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 30 H 0.07 1.93 7.36 -2.39 -0.02 1.91 16 31 H 0.08 2.15 7.69 -2.39 -0.02 2.14 16 32 H 0.05 2.07 5.64 -2.39 -0.01 2.06 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.02 1.04 7.32 -2.39 -0.02 1.03 16 36 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.06 2.88 5.28 -2.39 -0.01 2.87 16 Total: -1.00 -60.69 274.80 3.21 -57.48 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.20 Total: 11.76 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 3.54 Total: -39.96 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -3.57 Total: -81.92 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -60.69 3.21 -57.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306858971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.824 kcal (2) G-P(sol) polarization free energy of solvation -60.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds