Wall clock time and date at job start Mon Mar 30 2020 03:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46902 * 2 1 4 4 C 1.50697 * 109.46948 * 239.99815 * 2 1 3 5 5 H 1.08002 * 120.00085 * 245.23880 * 4 2 1 6 6 C 1.37876 * 119.99904 * 65.24655 * 4 2 1 7 7 N 1.31516 * 119.99677 * 194.78625 * 6 4 2 8 8 Si 1.86800 * 120.00039 * 14.78689 * 6 4 2 9 9 H 1.48506 * 109.47127 * 95.27990 * 8 6 4 10 10 H 1.48500 * 109.46976 * 215.27808 * 8 6 4 11 11 H 1.48501 * 109.47114 * 335.27593 * 8 6 4 12 12 N 1.46906 * 109.46839 * 120.00098 * 2 1 3 13 13 C 1.47846 * 111.00057 * 70.84273 * 12 2 1 14 14 C 1.54903 * 104.79855 * 146.36319 * 13 12 2 15 15 H 1.09005 * 110.99284 * 81.05075 * 14 13 12 16 16 C 1.52994 * 110.99406 * 204.83718 * 14 13 12 17 17 C 1.55144 * 101.65125 * 322.93018 * 14 13 12 18 18 C 1.47442 * 110.99582 * 191.68487 * 12 2 1 19 19 C 1.52997 * 109.89175 * 356.14514 * 18 12 2 20 20 C 1.53002 * 109.89045 * 117.33900 * 18 12 2 21 21 H 1.08997 * 109.47189 * 305.70121 * 1 2 3 22 22 H 1.08997 * 109.47177 * 185.70410 * 1 2 3 23 23 H 1.08997 * 109.47207 * 65.70305 * 1 2 3 24 24 H 0.97007 * 119.99719 * 180.02562 * 7 6 4 25 25 H 1.09004 * 110.36950 * 265.19125 * 13 12 2 26 26 H 1.08996 * 110.37256 * 27.52580 * 13 12 2 27 27 H 1.09005 * 109.46957 * 58.54238 * 16 14 13 28 28 H 1.08996 * 109.47565 * 178.54712 * 16 14 13 29 29 H 1.09002 * 109.46557 * 298.54749 * 16 14 13 30 30 H 1.08995 * 110.70753 * 154.03509 * 17 14 13 31 31 H 1.09008 * 110.70036 * 277.27467 * 17 14 13 32 32 H 1.08994 * 109.47118 * 53.20072 * 19 18 12 33 33 H 1.09001 * 109.47301 * 173.20514 * 19 18 12 34 34 H 1.09001 * 109.47040 * 293.20147 * 19 18 12 35 35 H 1.08996 * 109.46857 * 59.99122 * 20 18 12 36 36 H 1.08994 * 109.46995 * 179.97438 * 20 18 12 37 37 H 1.09004 * 109.46643 * 299.99589 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5817 -1.6353 -1.1336 6 6 1.7907 -0.1797 -2.4798 7 7 1.9619 -0.9202 -3.5531 8 14 1.2203 1.5911 -2.6480 9 1 2.3929 2.4672 -2.8989 10 1 0.2697 1.6992 -3.7837 11 1 0.5449 2.0147 -1.3951 12 7 2.0197 -0.6926 1.1995 13 6 1.7692 -2.1470 1.1109 14 6 2.9673 -2.8001 1.8441 15 1 2.8190 -2.7861 2.9239 16 6 3.2038 -4.2268 1.3447 17 6 4.1348 -1.8658 1.4307 18 6 3.4667 -0.4755 1.3812 19 6 4.0242 0.3282 0.2048 20 6 3.7205 0.2709 2.6924 21 1 -0.3633 0.5997 0.8345 22 1 -0.3633 -1.0225 0.1021 23 1 -0.3633 0.4228 -0.9366 24 1 1.7922 -0.5467 -4.4321 25 1 0.8342 -2.4020 1.6098 26 1 1.7431 -2.4647 0.0686 27 1 3.3912 -4.2094 0.2710 28 1 4.0662 -4.6529 1.8572 29 1 2.3224 -4.8343 1.5499 30 1 4.9277 -1.8859 2.1783 31 1 4.5212 -2.1428 0.4498 32 1 3.4397 1.2394 0.0777 33 1 5.0641 0.5883 0.4027 34 1 3.9662 -0.2704 -0.7043 35 1 3.3377 -0.3183 3.5257 36 1 4.7916 0.4272 2.8200 37 1 3.2129 1.2351 2.6657 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306858982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:44 Heat of formation + Delta-G solvation = 8.027823 kcal Electronic energy + Delta-G solvation = -15595.694073 eV Core-core repulsion = 13373.155171 eV Total energy + Delta-G solvation = -2222.538902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.36122 -34.21853 -32.64066 -31.63885 -28.69970 -26.85939 -26.07009 -24.68767 -23.95613 -20.39551 -19.75399 -17.70474 -16.66144 -15.32364 -14.91835 -14.03354 -13.68051 -13.21536 -12.84849 -12.57840 -12.43859 -12.16919 -12.08223 -11.89211 -11.56215 -11.22264 -10.85153 -10.73786 -10.63178 -10.42786 -10.25359 -10.04067 -9.86460 -9.79251 -9.56766 -9.36710 -9.06327 -8.43388 -7.08754 -6.12179 -4.01916 3.26904 3.37527 3.41776 4.41557 4.93043 5.17964 5.25337 5.35018 5.53724 5.79779 5.93620 6.05470 6.08307 6.16833 6.19961 6.32698 6.44306 6.47684 6.51286 6.57218 6.58769 6.64503 6.73379 6.78265 6.79308 6.86728 6.98871 7.10895 7.30771 7.31836 7.50289 7.69654 8.20586 8.26954 8.49428 8.92227 9.54248 10.99797 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032677 B = 0.012847 C = 0.011671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.665941 B = 2178.989960 C = 2398.576458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.165 3.835 3 H 0.041 0.959 4 C -0.534 4.534 5 H 0.081 0.919 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.859 3.141 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.253 1.253 12 N -0.517 5.517 13 C 0.044 3.956 14 C -0.103 4.103 15 H 0.068 0.932 16 C -0.139 4.139 17 C -0.122 4.122 18 C 0.103 3.897 19 C -0.167 4.167 20 C -0.123 4.123 21 H 0.026 0.974 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.262 0.738 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.026 0.974 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -0.753 9.054 9.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 H 0.059 0.941 4 C -0.572 4.572 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.686 3.314 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.177 1.177 12 N -0.240 5.240 13 C -0.084 4.084 14 C -0.122 4.122 15 H 0.086 0.914 16 C -0.196 4.196 17 C -0.160 4.160 18 C 0.014 3.986 19 C -0.224 4.224 20 C -0.181 4.181 21 H 0.045 0.955 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.015 -0.532 9.275 9.506 hybrid contribution 0.103 0.667 -1.019 1.222 sum 2.119 0.134 8.256 8.524 Atomic orbital electron populations 1.22037 0.98419 0.99898 0.98635 1.19916 0.91547 0.95204 0.87611 0.94090 1.21510 1.35987 1.09999 0.89724 0.90113 1.24884 0.94651 0.97232 0.95865 1.69992 1.49146 1.35557 0.98289 0.87228 0.78925 0.86781 0.78418 1.20812 1.21498 1.17667 1.63789 1.12511 1.08756 1.38963 1.23136 0.95863 0.88361 1.01033 1.22248 0.96388 0.94264 0.99342 0.91402 1.21691 1.00527 0.95958 1.01450 1.22894 0.97022 0.95099 1.00976 1.21443 0.88627 0.94044 0.94527 1.22687 0.97473 1.01613 1.00612 1.21744 0.99229 1.00057 0.97098 0.95497 0.93787 0.93765 0.92817 0.92615 0.90212 0.92347 0.93452 0.93072 0.92490 0.91271 0.92628 0.95455 0.87984 0.93285 0.93740 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.60 37.16 0.32 -2.62 16 2 C 0.17 3.82 1.44 -68.86 -0.10 3.72 16 3 H 0.04 0.99 4.36 -51.93 -0.23 0.76 16 4 C -0.53 -13.87 4.79 -34.44 -0.16 -14.04 16 5 H 0.08 2.28 6.08 -52.49 -0.32 1.96 16 6 C 0.08 2.10 5.34 -17.82 -0.10 2.00 16 7 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 8 Si 0.86 20.86 25.76 -169.99 -4.38 16.48 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.25 -5.86 5.51 56.52 0.31 -5.54 16 12 N -0.52 -10.73 4.74 -209.26 -0.99 -11.72 16 13 C 0.04 0.86 4.88 -2.30 -0.01 0.85 16 14 C -0.10 -1.72 3.63 -88.48 -0.32 -2.04 16 15 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.14 -2.06 9.29 37.15 0.35 -1.72 16 17 C -0.12 -2.11 5.48 -24.90 -0.14 -2.24 16 18 C 0.10 1.96 1.01 -130.61 -0.13 1.82 16 19 C -0.17 -3.40 7.04 37.16 0.26 -3.14 16 20 C -0.12 -2.02 8.70 37.16 0.32 -1.70 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.04 0.96 7.39 -51.93 -0.38 0.57 16 23 H 0.04 1.01 5.06 -51.93 -0.26 0.75 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.06 1.06 8.12 -51.93 -0.42 0.63 16 26 H 0.08 1.81 5.24 -51.93 -0.27 1.54 16 27 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.87 7.83 -51.93 -0.41 0.47 16 31 H 0.07 1.30 7.61 -51.92 -0.40 0.90 16 32 H 0.05 1.18 5.86 -51.93 -0.30 0.88 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.10 2.39 5.18 -51.93 -0.27 2.13 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -27.46 268.67 -6.55 -34.01 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.29 Total: 1.73 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 0.29 Total: -19.10 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.22 Total: -37.17 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.38 Total: 16.48 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.46 -6.55 -34.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306858982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.039 kcal (2) G-P(sol) polarization free energy of solvation -27.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds