Wall clock time and date at job start Mon Mar 30 2020 03:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46833 * 2 1 4 4 C 1.50696 * 109.47321 * 119.99922 * 2 1 3 5 5 H 1.07994 * 120.00642 * 115.23167 * 4 2 1 6 6 C 1.37880 * 119.99959 * 295.23279 * 4 2 1 7 7 N 1.31519 * 119.99982 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00018 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47300 * 90.00040 * 8 6 4 10 10 H 1.48500 * 109.47113 * 209.99806 * 8 6 4 11 11 H 1.48500 * 109.47150 * 329.99666 * 8 6 4 12 12 N 1.46899 * 109.47238 * 239.99858 * 2 1 3 13 13 C 1.47845 * 111.00104 * 288.94997 * 12 2 1 14 14 C 1.54906 * 104.79764 * 213.63717 * 13 12 2 15 15 H 1.09004 * 110.98827 * 278.98041 * 14 13 12 16 16 C 1.52988 * 110.99156 * 155.16149 * 14 13 12 17 17 C 1.55140 * 101.65200 * 37.06681 * 14 13 12 18 18 C 1.47444 * 111.00269 * 168.10339 * 12 2 1 19 19 C 1.52994 * 109.89062 * 242.66419 * 18 12 2 20 20 C 1.53002 * 109.88639 * 3.85571 * 18 12 2 21 21 H 1.08996 * 109.47385 * 64.65215 * 1 2 3 22 22 H 1.08998 * 109.47292 * 184.65502 * 1 2 3 23 23 H 1.09003 * 109.47114 * 304.65308 * 1 2 3 24 24 H 0.96999 * 119.99538 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.37140 * 332.46195 * 13 12 2 26 26 H 1.09002 * 110.37456 * 94.80507 * 13 12 2 27 27 H 1.08997 * 109.47495 * 61.45106 * 16 14 13 28 28 H 1.09004 * 109.46967 * 181.45178 * 16 14 13 29 29 H 1.09003 * 109.47392 * 301.44623 * 16 14 13 30 30 H 1.09001 * 110.70472 * 205.96901 * 17 14 13 31 31 H 1.08991 * 110.70779 * 82.73143 * 17 14 13 32 32 H 1.09004 * 109.47092 * 60.00103 * 19 18 12 33 33 H 1.09003 * 109.47420 * 179.97438 * 19 18 12 34 34 H 1.08995 * 109.47237 * 300.00097 * 19 18 12 35 35 H 1.08999 * 109.47096 * 65.80867 * 20 18 12 36 36 H 1.08997 * 109.47115 * 185.81497 * 20 18 12 37 37 H 1.09007 * 109.46888 * 305.81384 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5882 -1.6311 1.1333 6 6 1.7822 -0.1847 2.4803 7 7 1.1057 0.9369 2.5987 8 14 2.4043 -1.0657 4.0056 9 1 3.7635 -0.5716 4.3428 10 1 1.4850 -0.7989 5.1408 11 1 2.4590 -2.5267 3.7457 12 7 2.0197 -0.6925 -1.1994 13 6 1.7737 -2.1475 -1.1087 14 6 2.9725 -2.7980 -1.8431 15 1 2.8226 -2.7852 -2.9227 16 6 3.2142 -4.2232 -1.3423 17 6 4.1379 -1.8596 -1.4328 18 6 3.4657 -0.4714 -1.3839 19 6 3.7150 0.2741 -2.6965 20 6 4.0228 0.3355 -0.2094 21 1 -0.3634 0.4399 -0.9287 22 1 -0.3634 -1.0242 0.0834 23 1 -0.3633 0.5844 0.8454 24 1 0.9295 1.3064 3.4780 25 1 1.7505 -2.4641 -0.0659 26 1 0.8386 -2.4061 -1.6056 27 1 2.3343 -4.8338 -1.5452 28 1 4.0770 -4.6474 -1.8558 29 1 3.4035 -4.2041 -0.2690 30 1 4.9296 -1.8783 -2.1817 31 1 4.5268 -2.1342 -0.4523 32 1 3.2045 1.2369 -2.6701 33 1 4.7854 0.4343 -2.8258 34 1 3.3326 -0.3172 -3.5284 35 1 3.9520 -0.2556 0.7036 36 1 5.0667 0.5836 -0.4017 37 1 3.4466 1.2536 -0.0936 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306858983.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:47 Heat of formation + Delta-G solvation = 1.885874 kcal Electronic energy + Delta-G solvation = -15565.241095 eV Core-core repulsion = 13342.435858 eV Total energy + Delta-G solvation = -2222.805237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.24965 -34.15058 -32.61086 -31.34925 -28.18821 -26.74127 -26.00758 -24.82749 -23.84724 -20.39581 -19.65270 -17.73196 -16.24171 -15.20205 -14.90157 -13.97658 -13.71464 -13.12479 -12.82099 -12.54998 -12.37038 -12.02613 -11.77997 -11.60212 -11.24427 -11.03088 -10.85372 -10.71563 -10.63949 -10.46433 -10.23003 -10.04370 -9.78481 -9.72656 -9.54703 -9.41282 -8.86621 -8.30854 -7.05067 -5.97507 -4.01966 3.26595 3.34645 3.36666 4.40922 5.03355 5.23939 5.29459 5.37579 5.58924 5.80533 5.95841 6.09202 6.11773 6.16796 6.21909 6.37263 6.48321 6.51379 6.59511 6.66065 6.69938 6.77538 6.91387 6.97087 7.07562 7.08337 7.12848 7.32942 7.57159 7.65574 7.74596 8.02479 8.25904 8.39412 8.53035 9.03208 9.57601 11.04758 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.012913 C = 0.011623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.284153 B = 2167.796460 C = 2408.394560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.195 3.805 3 H 0.050 0.950 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.880 3.120 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.524 5.524 13 C 0.047 3.953 14 C -0.105 4.105 15 H 0.068 0.932 16 C -0.138 4.138 17 C -0.122 4.122 18 C 0.104 3.896 19 C -0.123 4.123 20 C -0.163 4.163 21 H 0.014 0.986 22 H 0.024 0.976 23 H 0.071 0.929 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.022 0.978 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -4.735 -6.472 9.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.068 0.932 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.708 3.292 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.248 5.248 13 C -0.081 4.081 14 C -0.124 4.124 15 H 0.087 0.913 16 C -0.196 4.196 17 C -0.160 4.160 18 C 0.014 3.986 19 C -0.181 4.181 20 C -0.220 4.220 21 H 0.033 0.967 22 H 0.043 0.957 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.041 0.959 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.805 -4.374 -6.749 8.897 hybrid contribution 0.720 -0.753 1.663 1.962 sum 4.525 -5.127 -5.086 8.523 Atomic orbital electron populations 1.21689 0.98254 0.99260 0.98968 1.19555 0.91784 0.95135 0.84723 0.93192 1.21652 1.34403 1.08959 0.91639 0.92125 1.24883 0.95236 0.94916 0.98602 1.69913 1.39781 1.19301 1.23449 0.86780 0.78747 0.80171 0.83459 1.20761 1.21270 1.20056 1.63875 1.12209 1.08163 1.40521 1.23079 0.95735 0.88987 1.00305 1.22274 0.96578 0.94071 0.99515 0.91329 1.21690 1.00558 0.96201 1.01139 1.22895 0.97020 0.95471 1.00651 1.21438 0.88969 0.93682 0.94557 1.21737 0.99059 1.00185 0.97099 1.22633 0.97211 1.02064 1.00073 0.96706 0.95674 0.91025 0.93014 0.91007 0.92736 0.93056 0.93442 0.92667 0.92558 0.91650 0.93004 0.93937 0.93432 0.88721 0.95903 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 8.97 37.16 0.33 -2.68 16 2 C 0.19 4.77 1.81 -68.87 -0.12 4.64 16 3 H 0.05 1.35 5.78 -51.93 -0.30 1.05 16 4 C -0.53 -13.53 4.30 -34.44 -0.15 -13.68 16 5 H 0.06 1.57 5.83 -52.49 -0.31 1.26 16 6 C 0.07 1.75 5.33 -17.82 -0.09 1.66 16 7 N -0.89 -24.67 11.72 55.43 0.65 -24.02 16 8 Si 0.88 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 N -0.52 -11.26 4.74 -209.27 -0.99 -12.25 16 13 C 0.05 0.94 5.04 -2.30 -0.01 0.92 16 14 C -0.11 -1.76 3.63 -88.49 -0.32 -2.08 16 15 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 16 C -0.14 -2.00 9.29 37.15 0.35 -1.66 16 17 C -0.12 -2.12 5.48 -24.91 -0.14 -2.25 16 18 C 0.10 2.01 1.01 -130.61 -0.13 1.87 16 19 C -0.12 -2.10 8.71 37.15 0.32 -1.78 16 20 C -0.16 -3.40 7.04 37.16 0.26 -3.14 16 21 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.02 0.59 7.69 -51.93 -0.40 0.19 16 23 H 0.07 1.89 6.57 -51.93 -0.34 1.54 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.07 1.59 5.23 -51.93 -0.27 1.32 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.06 0.87 7.83 -51.93 -0.41 0.46 16 31 H 0.06 1.19 7.62 -51.93 -0.40 0.79 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 2.20 5.13 -51.93 -0.27 1.93 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.45 5.92 -51.93 -0.31 1.15 16 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -26.47 275.25 -7.28 -33.75 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.36 Total: 0.76 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 0.29 Total: -18.16 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.34 Total: -36.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.47 -7.28 -33.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306858983.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.634 kcal (2) G-P(sol) polarization free energy of solvation -26.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds