Wall clock time and date at job start Mon Mar 30 2020 03:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46833 * 2 1 4 4 C 1.50696 * 109.47321 * 119.99922 * 2 1 3 5 5 H 1.07994 * 120.00642 * 115.23167 * 4 2 1 6 6 C 1.37880 * 119.99959 * 295.23279 * 4 2 1 7 7 N 1.31519 * 119.99982 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00018 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47300 * 90.00040 * 8 6 4 10 10 H 1.48500 * 109.47113 * 209.99806 * 8 6 4 11 11 H 1.48500 * 109.47150 * 329.99666 * 8 6 4 12 12 N 1.46899 * 109.47238 * 239.99858 * 2 1 3 13 13 C 1.47845 * 111.00104 * 288.94997 * 12 2 1 14 14 C 1.54906 * 104.79764 * 213.63717 * 13 12 2 15 15 H 1.09004 * 110.98827 * 278.98041 * 14 13 12 16 16 C 1.52988 * 110.99156 * 155.16149 * 14 13 12 17 17 C 1.55140 * 101.65200 * 37.06681 * 14 13 12 18 18 C 1.47444 * 111.00269 * 168.10339 * 12 2 1 19 19 C 1.52994 * 109.89062 * 242.66419 * 18 12 2 20 20 C 1.53002 * 109.88639 * 3.85571 * 18 12 2 21 21 H 1.08996 * 109.47385 * 64.65215 * 1 2 3 22 22 H 1.08998 * 109.47292 * 184.65502 * 1 2 3 23 23 H 1.09003 * 109.47114 * 304.65308 * 1 2 3 24 24 H 0.96999 * 119.99538 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.37140 * 332.46195 * 13 12 2 26 26 H 1.09002 * 110.37456 * 94.80507 * 13 12 2 27 27 H 1.08997 * 109.47495 * 61.45106 * 16 14 13 28 28 H 1.09004 * 109.46967 * 181.45178 * 16 14 13 29 29 H 1.09003 * 109.47392 * 301.44623 * 16 14 13 30 30 H 1.09001 * 110.70472 * 205.96901 * 17 14 13 31 31 H 1.08991 * 110.70779 * 82.73143 * 17 14 13 32 32 H 1.09004 * 109.47092 * 60.00103 * 19 18 12 33 33 H 1.09003 * 109.47420 * 179.97438 * 19 18 12 34 34 H 1.08995 * 109.47237 * 300.00097 * 19 18 12 35 35 H 1.08999 * 109.47096 * 65.80867 * 20 18 12 36 36 H 1.08997 * 109.47115 * 185.81497 * 20 18 12 37 37 H 1.09007 * 109.46888 * 305.81384 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5882 -1.6311 1.1333 6 6 1.7822 -0.1847 2.4803 7 7 1.1057 0.9369 2.5987 8 14 2.4043 -1.0657 4.0056 9 1 3.7635 -0.5716 4.3428 10 1 1.4850 -0.7989 5.1408 11 1 2.4590 -2.5267 3.7457 12 7 2.0197 -0.6925 -1.1994 13 6 1.7737 -2.1475 -1.1087 14 6 2.9725 -2.7980 -1.8431 15 1 2.8226 -2.7852 -2.9227 16 6 3.2142 -4.2232 -1.3423 17 6 4.1379 -1.8596 -1.4328 18 6 3.4657 -0.4714 -1.3839 19 6 3.7150 0.2741 -2.6965 20 6 4.0228 0.3355 -0.2094 21 1 -0.3634 0.4399 -0.9287 22 1 -0.3634 -1.0242 0.0834 23 1 -0.3633 0.5844 0.8454 24 1 0.9295 1.3064 3.4780 25 1 1.7505 -2.4641 -0.0659 26 1 0.8386 -2.4061 -1.6056 27 1 2.3343 -4.8338 -1.5452 28 1 4.0770 -4.6474 -1.8558 29 1 3.4035 -4.2041 -0.2690 30 1 4.9296 -1.8783 -2.1817 31 1 4.5268 -2.1342 -0.4523 32 1 3.2045 1.2369 -2.6701 33 1 4.7854 0.4343 -2.8258 34 1 3.3326 -0.3172 -3.5284 35 1 3.9520 -0.2556 0.7036 36 1 5.0667 0.5836 -0.4017 37 1 3.4466 1.2536 -0.0936 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306858983.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:47 Heat of formation + Delta-G solvation = -13.335523 kcal Electronic energy + Delta-G solvation = -15565.901144 eV Core-core repulsion = 13342.435858 eV Total energy + Delta-G solvation = -2223.465286 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.85636 -35.93324 -34.13186 -33.21096 -29.91124 -28.42693 -27.36355 -26.76031 -25.46749 -22.15880 -21.15045 -19.41936 -18.18572 -16.81740 -16.63220 -15.72806 -15.39267 -14.62246 -14.54203 -14.15648 -13.75525 -13.55034 -13.38691 -13.15464 -12.98756 -12.81308 -12.61672 -12.49734 -12.22973 -12.04898 -12.00775 -11.64573 -11.56505 -11.28148 -11.20225 -11.02609 -10.76460 -10.36107 -8.83118 -7.99943 -6.10862 1.36864 1.40050 1.47056 2.42658 3.21718 3.47351 3.88221 3.94664 4.17931 4.45419 4.58875 4.69494 4.75060 4.83711 4.88563 4.95142 4.98249 5.04772 5.09688 5.15477 5.17056 5.18374 5.27242 5.30032 5.31906 5.40128 5.55213 5.59278 5.69497 5.73781 5.86932 6.02949 6.30806 6.49019 6.76078 7.04309 7.51019 8.99234 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.012913 C = 0.011623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.284153 B = 2167.796460 C = 2408.394560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.201 3.799 3 H 0.020 0.980 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.936 3.064 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.529 5.529 13 C 0.044 3.956 14 C -0.095 4.095 15 H 0.085 0.915 16 C -0.134 4.134 17 C -0.117 4.117 18 C 0.094 3.906 19 C -0.116 4.116 20 C -0.153 4.153 21 H 0.025 0.975 22 H 0.024 0.976 23 H 0.047 0.953 24 H 0.258 0.742 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 -6.266 -7.824 11.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 H 0.038 0.962 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.763 3.237 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.253 5.253 13 C -0.084 4.084 14 C -0.114 4.114 15 H 0.104 0.896 16 C -0.191 4.191 17 C -0.155 4.155 18 C 0.004 3.996 19 C -0.174 4.174 20 C -0.210 4.210 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.132 -5.920 -8.111 11.277 hybrid contribution 0.317 -0.258 2.035 2.076 sum 5.448 -6.178 -6.076 10.236 Atomic orbital electron populations 1.21540 0.98408 0.98752 0.98449 1.19312 0.91630 0.93877 0.85843 0.96176 1.21780 1.33293 1.08406 0.92111 0.92421 1.25527 0.95794 0.95598 1.01185 1.70034 1.41298 1.20653 1.23740 0.85894 0.78113 0.79325 0.80392 1.20492 1.21432 1.19518 1.63857 1.13947 1.09016 1.38466 1.23088 0.97697 0.88294 0.99320 1.22250 0.94253 0.94889 0.99994 0.89645 1.21654 1.02155 0.94951 1.00372 1.22857 0.97833 0.93877 1.00983 1.21652 0.87771 0.95167 0.94990 1.21671 1.00599 0.99246 0.95861 1.22461 0.98355 1.00440 0.99793 0.95579 0.95678 0.93431 0.93272 0.93662 0.92509 0.92011 0.90980 0.94142 0.89642 0.92914 0.94375 0.91515 0.92218 0.91430 0.93491 0.94755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.62 8.97 71.98 0.65 -4.98 16 2 C 0.20 10.03 1.81 44.17 0.08 10.11 16 3 H 0.02 1.14 5.78 -2.39 -0.01 1.13 16 4 C -0.52 -26.94 4.30 25.60 0.11 -26.83 16 5 H 0.06 3.01 5.83 -2.91 -0.02 3.00 16 6 C 0.02 0.97 5.33 84.65 0.45 1.42 16 7 N -0.92 -52.50 11.72 21.45 0.25 -52.25 16 8 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 N -0.53 -22.43 4.74 -815.99 -3.87 -26.30 16 13 C 0.04 1.70 5.04 86.77 0.44 2.14 16 14 C -0.09 -2.88 3.63 -9.41 -0.03 -2.91 16 15 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 16 C -0.13 -3.45 9.29 71.98 0.67 -2.78 16 17 C -0.12 -3.72 5.48 31.78 0.17 -3.55 16 18 C 0.09 3.49 1.01 3.87 0.00 3.49 16 19 C -0.12 -3.65 8.71 71.98 0.63 -3.03 16 20 C -0.15 -6.37 7.04 71.98 0.51 -5.86 16 21 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.02 1.19 7.69 -2.39 -0.02 1.17 16 23 H 0.05 2.57 6.57 -2.39 -0.02 2.56 16 24 H 0.26 14.24 8.31 -92.71 -0.77 13.46 16 25 H 0.05 2.00 5.23 -2.39 -0.01 1.98 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.04 1.15 8.11 -2.39 -0.02 1.14 16 30 H 0.09 2.24 7.83 -2.39 -0.02 2.22 16 31 H 0.05 1.81 7.62 -2.39 -0.02 1.79 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 3.16 5.13 -2.39 -0.01 3.15 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.03 1.60 5.92 -2.38 -0.01 1.59 16 Total: -1.00 -57.07 275.25 3.09 -53.97 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.02 Total: 12.10 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 3.67 Total: -32.78 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -3.62 Total: -78.55 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -57.07 3.09 -53.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306858983.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.638 kcal (2) G-P(sol) polarization free energy of solvation -57.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds