Wall clock time and date at job start Mon Mar 30 2020 03:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50705 * 109.47224 * 239.99472 * 2 1 3 5 5 H 1.07991 * 120.00195 * 240.00120 * 4 2 1 6 6 C 1.37882 * 119.99521 * 60.00135 * 4 2 1 7 7 N 1.31514 * 120.00382 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99714 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47466 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47252 * 120.00294 * 8 6 4 11 11 H 1.48504 * 109.47300 * 240.00296 * 8 6 4 12 12 N 1.46905 * 109.46937 * 119.99895 * 2 1 3 13 13 C 1.48564 * 110.99864 * 62.29132 * 12 2 1 14 14 C 1.54381 * 104.59080 * 200.96067 * 13 12 2 15 15 H 1.09000 * 110.40870 * 142.79755 * 14 13 12 16 16 C 1.53005 * 110.32087 * 264.95468 * 14 13 12 17 17 C 1.54262 * 105.06320 * 23.85091 * 14 13 12 18 18 H 1.08993 * 110.32380 * 241.00457 * 17 14 13 19 19 C 1.52998 * 110.32196 * 118.89430 * 17 14 13 20 20 C 1.48553 * 110.99856 * 306.87041 * 12 2 1 21 21 H 1.08996 * 110.41468 * 40.26413 * 20 12 2 22 22 C 1.52997 * 110.41396 * 277.81883 * 20 12 2 23 23 H 1.09002 * 109.46702 * 66.33167 * 1 2 3 24 24 H 1.08998 * 109.47000 * 186.32688 * 1 2 3 25 25 H 1.08995 * 109.47200 * 306.32737 * 1 2 3 26 26 H 0.96992 * 120.00456 * 180.02562 * 7 6 4 27 27 H 1.08998 * 110.41411 * 82.17906 * 13 12 2 28 28 H 1.08996 * 110.41245 * 319.73610 * 13 12 2 29 29 H 1.09003 * 109.46689 * 175.63914 * 16 14 13 30 30 H 1.08995 * 109.47357 * 295.63422 * 16 14 13 31 31 H 1.09000 * 109.47406 * 55.64081 * 16 14 13 32 32 H 1.09005 * 109.46828 * 61.45961 * 19 17 14 33 33 H 1.08998 * 109.46853 * 181.44975 * 19 17 14 34 34 H 1.08993 * 109.47717 * 301.45722 * 19 17 14 35 35 H 1.09001 * 109.46877 * 309.84303 * 22 20 12 36 36 H 1.09000 * 109.46935 * 69.84195 * 22 20 12 37 37 H 1.08997 * 109.47330 * 189.83992 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1197 -4.0078 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5868 -4.8165 11 1 3.1474 -0.1860 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 1.5891 -2.1144 1.2064 14 6 1.6835 -2.5421 2.6867 15 1 0.8652 -3.2159 2.9407 16 6 3.0297 -3.2159 2.9603 17 6 1.5674 -1.2310 3.4911 18 1 2.4686 -1.0683 4.0821 19 6 0.3372 -1.2723 4.3999 20 6 1.4125 -0.1213 2.4291 21 1 0.3586 0.1025 2.2641 22 6 2.1657 1.1388 2.8603 23 1 -0.3633 0.4126 -0.9413 24 1 -0.3633 -1.0214 0.1132 25 1 -0.3633 0.6088 0.8279 26 1 0.7090 1.1612 -3.4844 27 1 2.2585 -2.7173 0.5929 28 1 0.5628 -2.2025 0.8500 29 1 3.1134 -3.4422 4.0233 30 1 3.0970 -4.1398 2.3858 31 1 3.8378 -2.5459 2.6667 32 1 0.4379 -2.0926 5.1105 33 1 0.2542 -0.3303 4.9419 34 1 -0.5566 -1.4234 3.7948 35 1 3.2349 0.9296 2.8930 36 1 1.9737 1.9392 2.1457 37 1 1.8249 1.4452 3.8492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306945896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:31 Heat of formation + Delta-G solvation = -9.225798 kcal Electronic energy + Delta-G solvation = -15178.272260 eV Core-core repulsion = 12954.985185 eV Total energy + Delta-G solvation = -2223.287075 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.12820 -34.53749 -32.16476 -31.59670 -28.95737 -27.75611 -25.27241 -24.48397 -23.42465 -21.06490 -19.29339 -18.53535 -15.88851 -15.44253 -14.59329 -14.12202 -13.75868 -13.53678 -13.07938 -12.72356 -12.55754 -12.25114 -12.05105 -11.69058 -11.41134 -11.19083 -11.14595 -10.88207 -10.67434 -10.46767 -10.36872 -10.14073 -9.93807 -9.86375 -9.77403 -9.52311 -8.75751 -8.35681 -7.15108 -5.97803 -4.01825 3.31238 3.39092 3.43804 4.44264 5.00349 5.12271 5.13884 5.33421 5.47865 5.70260 5.79098 5.81318 5.93266 5.96603 6.00272 6.13360 6.21025 6.32144 6.38937 6.43171 6.54436 6.57912 6.65725 6.75522 6.83261 6.85701 6.90855 6.97952 7.19231 7.51889 7.76566 7.89873 8.11157 8.45366 8.62897 9.05275 9.63382 11.08977 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039188 B = 0.009701 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.332486 B = 2885.683151 C = 3244.759516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.200 3.800 3 H 0.041 0.959 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.498 5.498 13 C 0.049 3.951 14 C -0.098 4.098 15 H 0.063 0.937 16 C -0.135 4.135 17 C -0.089 4.089 18 H 0.072 0.928 19 C -0.141 4.141 20 C 0.050 3.950 21 H 0.054 0.946 22 C -0.130 4.130 23 H 0.089 0.911 24 H 0.028 0.972 25 H 0.012 0.988 26 H 0.259 0.741 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -3.980 10.661 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.093 3.907 3 H 0.058 0.942 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.222 5.222 13 C -0.080 4.080 14 C -0.117 4.117 15 H 0.081 0.919 16 C -0.192 4.192 17 C -0.108 4.108 18 H 0.090 0.910 19 C -0.199 4.199 20 C -0.058 4.058 21 H 0.072 0.928 22 C -0.188 4.188 23 H 0.108 0.892 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.453 -3.800 10.496 11.172 hybrid contribution -0.712 -0.424 -1.011 1.307 sum -0.258 -4.224 9.486 10.387 Atomic orbital electron populations 1.22429 1.01136 0.98251 1.01599 1.19391 0.89705 0.95004 0.86593 0.94163 1.21183 1.30318 1.12325 0.89802 0.92053 1.24936 0.95304 0.95142 0.98997 1.69891 1.37205 1.23105 1.23183 0.86496 0.78527 0.79685 0.83031 1.19775 1.21234 1.21087 1.65652 1.53203 1.01267 1.02066 1.22950 0.99447 0.91991 0.93574 1.22026 0.97331 0.95841 0.96517 0.91890 1.21763 0.97587 1.00060 0.99791 1.22003 0.97838 0.95017 0.95908 0.90954 1.21844 0.98014 1.00898 0.99115 1.22744 0.97537 0.94012 0.91548 0.92814 1.21640 1.00680 0.97159 0.99334 0.89205 0.95300 0.96931 0.93132 0.90853 0.93877 0.93821 0.93293 0.91935 0.93175 0.93034 0.92934 0.92353 0.92914 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 8.21 37.16 0.30 -3.99 16 2 C 0.20 5.10 2.43 -68.86 -0.17 4.93 16 3 H 0.04 1.14 7.85 -51.93 -0.41 0.73 16 4 C -0.50 -13.76 8.06 -34.44 -0.28 -14.04 16 5 H 0.06 1.71 6.82 -52.49 -0.36 1.35 16 6 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 7 N -0.89 -25.72 11.29 55.43 0.63 -25.09 16 8 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.50 -10.86 5.13 -215.62 -1.11 -11.96 16 13 C 0.05 0.97 5.03 -2.18 -0.01 0.96 16 14 C -0.10 -1.57 3.30 -89.23 -0.29 -1.87 16 15 H 0.06 0.94 7.71 -51.93 -0.40 0.54 16 16 C -0.13 -1.94 8.90 37.16 0.33 -1.61 16 17 C -0.09 -1.38 2.85 -89.24 -0.25 -1.63 16 18 H 0.07 1.09 7.43 -51.93 -0.39 0.70 16 19 C -0.14 -1.86 8.91 37.16 0.33 -1.53 16 20 C 0.05 0.93 2.23 -66.07 -0.15 0.79 16 21 H 0.05 1.06 5.19 -51.93 -0.27 0.79 16 22 C -0.13 -2.22 9.30 37.16 0.35 -1.88 16 23 H 0.09 2.44 5.93 -51.93 -0.31 2.14 16 24 H 0.03 0.68 5.89 -51.93 -0.31 0.37 16 25 H 0.01 0.27 6.30 -51.93 -0.33 -0.06 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.07 1.54 7.04 -51.93 -0.37 1.17 16 28 H 0.04 0.92 5.69 -51.93 -0.30 0.62 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 278.96 15.07 4.20 4.20 Total: -1.00 -28.07 278.96 -7.58 -35.65 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.35 Total: -0.99 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 0.07 Total: -18.38 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.48 Total: -37.05 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.07 -7.58 -35.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306945896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.426 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds