Wall clock time and date at job start Mon Mar 30 2020 03:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47090 * 2 1 4 4 C 1.50703 * 109.47240 * 239.99466 * 2 1 3 5 5 H 1.07989 * 120.00415 * 244.26881 * 4 2 1 6 6 C 1.37876 * 119.99502 * 64.26831 * 4 2 1 7 7 N 1.31518 * 120.00208 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46696 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47098 * 120.00157 * 8 6 4 11 11 H 1.48497 * 109.47075 * 239.99997 * 8 6 4 12 12 N 1.46899 * 109.47144 * 119.99790 * 2 1 3 13 13 C 1.48560 * 111.00169 * 64.92879 * 12 2 1 14 14 C 1.54382 * 104.59702 * 159.03960 * 13 12 2 15 15 H 1.09002 * 110.31844 * 95.04299 * 14 13 12 16 16 C 1.52998 * 110.32588 * 217.15329 * 14 13 12 17 17 C 1.54570 * 105.09035 * 336.16012 * 14 13 12 18 18 H 1.09008 * 110.36820 * 118.81475 * 17 14 13 19 19 C 1.52994 * 110.42461 * 241.12174 * 17 14 13 20 20 C 1.48563 * 111.00296 * 180.35209 * 12 2 1 21 21 H 1.09003 * 110.40781 * 319.73746 * 20 12 2 22 22 C 1.52995 * 110.41052 * 82.06014 * 20 12 2 23 23 H 1.08999 * 109.47382 * 174.21101 * 1 2 3 24 24 H 1.09005 * 109.46949 * 294.21199 * 1 2 3 25 25 H 1.09002 * 109.46903 * 54.21023 * 1 2 3 26 26 H 0.97001 * 119.99580 * 179.97438 * 7 6 4 27 27 H 1.08997 * 110.41483 * 277.82103 * 13 12 2 28 28 H 1.09002 * 110.40979 * 40.14828 * 13 12 2 29 29 H 1.09000 * 109.47049 * 58.54508 * 16 14 13 30 30 H 1.08996 * 109.46751 * 178.54990 * 16 14 13 31 31 H 1.09000 * 109.47082 * 298.54519 * 16 14 13 32 32 H 1.08994 * 109.47233 * 175.51554 * 19 17 14 33 33 H 1.09006 * 109.47047 * 295.51246 * 19 17 14 34 34 H 1.09003 * 109.47251 * 55.51006 * 19 17 14 35 35 H 1.08996 * 109.47434 * 55.70344 * 22 20 12 36 36 H 1.09005 * 109.46882 * 175.69915 * 22 20 12 37 37 H 1.09001 * 109.47161 * 295.69838 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5952 -1.6270 -1.1328 6 6 1.7734 -0.1904 -2.4808 7 7 1.0884 0.9260 -2.5996 8 14 2.3967 -1.0707 -4.0060 9 1 3.1346 -2.2950 -3.6039 10 1 1.2456 -1.4469 -4.8655 11 1 3.3046 -0.1703 -4.7609 12 7 2.0197 -0.6924 1.1994 13 6 1.6431 -2.1293 1.1758 14 6 2.6347 -2.8075 2.1453 15 1 2.1928 -2.8965 3.1377 16 6 3.0354 -4.1864 1.6172 17 6 3.8622 -1.8689 2.1871 18 1 4.0210 -1.4969 3.1994 19 6 5.1098 -2.5990 1.6862 20 6 3.5047 -0.7049 1.2381 21 1 3.9093 -0.8881 0.2427 22 6 4.0352 0.6184 1.7933 23 1 -0.3634 -1.0224 -0.1037 24 1 -0.3633 0.4215 0.9373 25 1 -0.3633 0.6010 -0.8336 26 1 0.9065 1.2920 -3.4793 27 1 0.6193 -2.2599 1.5263 28 1 1.7544 -2.5349 0.1702 29 1 3.4862 -4.0806 0.6304 30 1 3.7545 -4.6413 2.2984 31 1 2.1510 -4.8195 1.5467 32 1 5.9472 -1.9024 1.6467 33 1 5.3495 -3.4171 2.3656 34 1 4.9217 -2.9979 0.6894 35 1 3.5951 0.8039 2.7730 36 1 5.1199 0.5645 1.8865 37 1 3.7686 1.4296 1.1157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306945897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:34 Heat of formation + Delta-G solvation = -11.542056 kcal Electronic energy + Delta-G solvation = -15318.385784 eV Core-core repulsion = 13094.998269 eV Total energy + Delta-G solvation = -2223.387516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.03160 -34.63579 -32.17529 -31.42636 -28.99333 -27.37522 -25.30431 -24.74875 -23.32661 -20.84065 -19.11756 -18.28055 -16.16344 -15.25407 -15.09113 -14.14748 -13.76910 -13.47033 -13.04682 -12.65584 -12.15483 -12.07067 -11.90506 -11.57655 -11.35897 -11.09137 -11.02698 -10.85248 -10.77403 -10.56019 -10.12363 -9.92097 -9.88752 -9.82385 -9.69583 -9.45096 -9.12284 -8.37685 -7.15478 -5.98519 -4.08531 3.25993 3.34717 3.37412 4.40936 5.07271 5.19552 5.20880 5.29616 5.55925 5.72583 5.82709 5.93977 6.02772 6.11984 6.16471 6.20576 6.28241 6.32748 6.41499 6.59361 6.61126 6.67158 6.75784 6.89723 6.97066 7.03332 7.06607 7.10810 7.25132 7.57824 7.71768 7.99238 8.19678 8.28861 8.45180 9.02480 9.57834 11.03886 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028808 B = 0.011605 C = 0.010670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.714226 B = 2412.244280 C = 2623.464872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.195 3.805 3 H 0.042 0.958 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.884 3.116 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.510 5.510 13 C 0.041 3.959 14 C -0.095 4.095 15 H 0.065 0.935 16 C -0.142 4.142 17 C -0.089 4.089 18 H 0.067 0.933 19 C -0.142 4.142 20 C 0.065 3.935 21 H 0.066 0.934 22 C -0.130 4.130 23 H 0.026 0.974 24 H 0.015 0.985 25 H 0.072 0.928 26 H 0.260 0.740 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -5.693 7.266 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.060 0.940 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.712 3.288 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.233 5.233 13 C -0.087 4.087 14 C -0.114 4.114 15 H 0.083 0.917 16 C -0.200 4.200 17 C -0.108 4.108 18 H 0.085 0.915 19 C -0.200 4.200 20 C -0.044 4.044 21 H 0.084 0.916 22 C -0.187 4.187 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.261 -5.257 7.577 10.159 hybrid contribution 0.564 -0.815 -1.756 2.017 sum 4.825 -6.072 5.821 9.697 Atomic orbital electron populations 1.21689 0.97988 0.99508 0.99010 1.19377 0.92158 0.94724 0.84932 0.94035 1.21716 1.34852 1.09453 0.91755 0.92297 1.24914 0.94940 0.94795 0.98804 1.69931 1.39508 1.19667 1.23378 0.86666 0.78682 0.79832 0.83600 1.19914 1.21040 1.21039 1.65698 1.06910 1.10410 1.40326 1.23028 0.97180 0.90213 0.98325 1.21975 0.96056 0.94213 0.99185 0.91693 1.21919 1.00501 0.96476 1.01089 1.22006 0.94080 0.95575 0.99178 0.91503 1.21920 0.97279 0.99619 1.01164 1.22542 0.90653 0.93353 0.97808 0.91591 1.21639 0.98590 0.97722 1.00784 0.95507 0.96590 0.90926 0.93034 0.92207 0.92095 0.92307 0.93196 0.93381 0.93331 0.93221 0.92298 0.93068 0.93780 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 8.79 37.16 0.33 -2.72 16 2 C 0.20 4.92 2.28 -68.86 -0.16 4.77 16 3 H 0.04 1.16 7.44 -51.93 -0.39 0.78 16 4 C -0.54 -14.42 6.46 -34.44 -0.22 -14.64 16 5 H 0.06 1.58 5.68 -52.49 -0.30 1.29 16 6 C 0.07 1.86 5.32 -17.82 -0.09 1.77 16 7 N -0.89 -25.25 11.70 55.43 0.65 -24.60 16 8 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.51 -11.13 5.08 -215.61 -1.10 -12.22 16 13 C 0.04 0.82 4.88 -2.18 -0.01 0.81 16 14 C -0.10 -1.57 3.65 -89.07 -0.33 -1.89 16 15 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.14 -2.05 7.94 37.16 0.29 -1.75 16 17 C -0.09 -1.47 3.22 -89.07 -0.29 -1.75 16 18 H 0.07 1.05 7.86 -51.92 -0.41 0.64 16 19 C -0.14 -2.05 7.94 37.15 0.30 -1.75 16 20 C 0.07 1.29 2.23 -66.07 -0.15 1.14 16 21 H 0.07 1.48 6.07 -51.93 -0.32 1.16 16 22 C -0.13 -2.33 9.31 37.16 0.35 -1.99 16 23 H 0.03 0.63 7.37 -51.93 -0.38 0.25 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 1.93 6.57 -51.93 -0.34 1.59 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.06 1.18 7.84 -51.93 -0.41 0.77 16 28 H 0.06 1.35 5.50 -51.93 -0.29 1.06 16 29 H 0.06 0.90 6.52 -51.93 -0.34 0.56 16 30 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.62 7.16 -51.93 -0.37 0.25 16 34 H 0.06 0.90 6.47 -51.93 -0.34 0.57 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 1.08 7.51 -51.93 -0.39 0.70 16 LS Contribution 275.92 15.07 4.16 4.16 Total: -1.00 -27.54 275.92 -7.59 -35.13 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.30 Total: -0.63 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 0.02 Total: -18.02 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.45 Total: -36.82 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.54 -7.59 -35.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306945897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.588 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds