Wall clock time and date at job start Mon Mar 30 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.47652 * 2 1 4 4 C 1.50703 * 109.46932 * 239.99704 * 2 1 3 5 5 H 1.08002 * 120.00250 * 240.00203 * 4 2 1 6 6 C 1.37873 * 120.00128 * 60.00483 * 4 2 1 7 7 N 1.31514 * 119.99670 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00421 * 179.97438 * 6 4 2 9 9 H 1.48511 * 109.46844 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47305 * 119.99865 * 8 6 4 11 11 H 1.48501 * 109.47345 * 240.00256 * 8 6 4 12 12 N 1.46906 * 109.46651 * 120.00482 * 2 1 3 13 13 C 1.48558 * 111.00503 * 62.28891 * 12 2 1 14 14 C 1.54378 * 104.59441 * 200.96146 * 13 12 2 15 15 H 1.08994 * 110.32392 * 142.85066 * 14 13 12 16 16 C 1.52998 * 110.32274 * 264.95628 * 14 13 12 17 17 C 1.54258 * 105.05969 * 23.84895 * 14 13 12 18 18 H 1.09007 * 110.31919 * 118.90051 * 17 14 13 19 19 C 1.53003 * 110.32673 * 241.00067 * 17 14 13 20 20 C 1.48560 * 110.99677 * 306.86512 * 12 2 1 21 21 H 1.08998 * 110.40919 * 40.26826 * 20 12 2 22 22 C 1.52995 * 110.41628 * 277.82277 * 20 12 2 23 23 H 1.08999 * 109.47629 * 186.32617 * 1 2 3 24 24 H 1.08994 * 109.46888 * 306.33207 * 1 2 3 25 25 H 1.09003 * 109.46760 * 66.32489 * 1 2 3 26 26 H 0.97000 * 119.99868 * 179.97438 * 7 6 4 27 27 H 1.09004 * 110.40897 * 319.73705 * 13 12 2 28 28 H 1.09000 * 110.40923 * 82.06287 * 13 12 2 29 29 H 1.09001 * 109.47510 * 58.54570 * 16 14 13 30 30 H 1.08998 * 109.47272 * 178.54550 * 16 14 13 31 31 H 1.09005 * 109.47138 * 298.54861 * 16 14 13 32 32 H 1.09001 * 109.46764 * 58.55070 * 19 17 14 33 33 H 1.08998 * 109.47233 * 178.54508 * 19 17 14 34 34 H 1.09001 * 109.47171 * 298.55329 * 19 17 14 35 35 H 1.09001 * 109.47056 * 66.31884 * 22 20 12 36 36 H 1.08999 * 109.47497 * 186.31864 * 22 20 12 37 37 H 1.09003 * 109.47238 * 306.32749 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1860 -4.8161 12 7 2.0196 -0.6926 1.1995 13 6 1.5890 -2.1144 1.2064 14 6 1.6834 -2.5423 2.6867 15 1 0.8651 -3.2167 2.9388 16 6 3.0295 -3.2161 2.9602 17 6 1.5673 -1.2311 3.4910 18 1 0.6909 -1.2606 4.1385 19 6 2.8324 -1.0029 4.3208 20 6 1.4125 -0.1214 2.4291 21 1 0.3586 0.1024 2.2640 22 6 2.1656 1.1386 2.8604 23 1 -0.3634 -1.0214 0.1132 24 1 -0.3633 0.6088 0.8278 25 1 -0.3633 0.4127 -0.9412 26 1 0.7089 1.1612 -3.4844 27 1 0.5627 -2.2025 0.8499 28 1 2.2573 -2.7170 0.5912 29 1 3.8375 -2.5266 2.7152 30 1 3.0919 -3.4890 4.0137 31 1 3.1184 -4.1127 2.3467 32 1 3.6983 -0.9638 3.6598 33 1 2.7464 -0.0611 4.8628 34 1 2.9538 -1.8210 5.0307 35 1 2.0244 1.9199 2.1135 36 1 1.7811 1.4808 3.8212 37 1 3.2279 0.9130 2.9536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306945898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:37 Heat of formation + Delta-G solvation = -1.123396 kcal Electronic energy + Delta-G solvation = -15266.980670 eV Core-core repulsion = 13044.044941 eV Total energy + Delta-G solvation = -2222.935729 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29341 -34.72418 -32.22817 -31.68331 -28.53087 -27.04277 -25.56929 -24.92313 -23.85719 -21.09214 -18.84294 -17.92971 -16.24994 -15.72290 -14.51981 -14.39273 -13.80387 -13.60416 -13.33764 -12.91314 -12.21227 -12.18140 -11.62055 -11.48582 -11.37229 -11.18139 -10.98056 -10.88218 -10.67729 -10.47354 -10.38371 -10.07471 -9.99158 -9.79324 -9.68485 -9.53293 -8.75601 -8.35765 -7.14770 -5.97895 -4.01937 3.31146 3.39001 3.43644 4.44197 5.01003 5.15689 5.19130 5.33424 5.43755 5.78081 5.78326 5.83579 5.91322 6.01366 6.10892 6.14743 6.28426 6.35676 6.42411 6.48786 6.52340 6.58654 6.67601 6.76020 6.85842 6.89841 6.91135 6.97632 7.18683 7.52251 7.76603 7.89712 8.11310 8.45381 8.62726 9.05170 9.63318 11.08865 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040275 B = 0.009799 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.050319 B = 2856.742155 C = 3217.079925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.200 3.800 3 H 0.041 0.959 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.496 5.496 13 C 0.048 3.952 14 C -0.098 4.098 15 H 0.060 0.940 16 C -0.136 4.136 17 C -0.088 4.088 18 H 0.060 0.940 19 C -0.137 4.137 20 C 0.050 3.950 21 H 0.051 0.949 22 C -0.131 4.131 23 H 0.028 0.972 24 H 0.012 0.988 25 H 0.089 0.911 26 H 0.259 0.741 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 -3.848 10.600 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.093 3.907 3 H 0.058 0.942 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.220 5.220 13 C -0.080 4.080 14 C -0.117 4.117 15 H 0.079 0.921 16 C -0.193 4.193 17 C -0.107 4.107 18 H 0.078 0.922 19 C -0.194 4.194 20 C -0.059 4.059 21 H 0.069 0.931 22 C -0.188 4.188 23 H 0.047 0.953 24 H 0.031 0.969 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.523 -3.669 10.439 11.169 hybrid contribution -0.791 -0.440 -1.025 1.367 sum 0.733 -4.109 9.414 10.298 Atomic orbital electron populations 1.22433 1.01157 0.98253 1.01614 1.19392 0.89693 0.95012 0.86607 0.94150 1.21181 1.30310 1.12314 0.89804 0.92061 1.24934 0.95301 0.95149 0.98997 1.69896 1.37179 1.23136 1.23175 0.86496 0.78525 0.79684 0.83038 1.19776 1.21235 1.21092 1.65638 1.53159 1.01196 1.01988 1.22960 0.99463 0.92033 0.93562 1.21972 0.97370 0.95836 0.96519 0.92111 1.21855 0.97748 0.99895 0.99814 1.21896 0.97646 0.94997 0.96137 0.92183 1.21927 0.98456 1.00040 0.99005 1.22702 0.97355 0.94134 0.91695 0.93084 1.21705 1.00837 0.96949 0.99344 0.95301 0.96928 0.89197 0.93138 0.93906 0.90811 0.91571 0.93584 0.93582 0.91479 0.93308 0.93652 0.93067 0.93678 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 8.20 37.16 0.30 -4.01 16 2 C 0.20 5.08 2.43 -68.86 -0.17 4.91 16 3 H 0.04 1.14 7.74 -51.94 -0.40 0.74 16 4 C -0.50 -13.73 8.06 -34.44 -0.28 -14.01 16 5 H 0.06 1.70 6.82 -52.49 -0.36 1.34 16 6 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 7 N -0.89 -25.71 11.29 55.43 0.63 -25.09 16 8 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.50 -10.73 5.13 -215.62 -1.11 -11.83 16 13 C 0.05 0.96 5.03 -2.18 -0.01 0.95 16 14 C -0.10 -1.57 3.65 -89.24 -0.33 -1.90 16 15 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.14 -1.94 7.93 37.16 0.29 -1.65 16 17 C -0.09 -1.37 3.57 -89.24 -0.32 -1.68 16 18 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.14 -1.87 6.76 37.16 0.25 -1.62 16 20 C 0.05 0.93 2.60 -66.07 -0.17 0.75 16 21 H 0.05 1.01 5.49 -51.93 -0.28 0.73 16 22 C -0.13 -2.21 8.17 37.16 0.30 -1.91 16 23 H 0.03 0.68 5.89 -51.93 -0.31 0.37 16 24 H 0.01 0.27 6.30 -51.93 -0.33 -0.05 16 25 H 0.09 2.45 5.93 -51.93 -0.31 2.14 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.04 0.91 5.69 -51.93 -0.30 0.61 16 28 H 0.07 1.54 7.04 -51.93 -0.37 1.18 16 29 H 0.07 1.02 6.58 -51.93 -0.34 0.68 16 30 H 0.05 0.57 7.01 -51.93 -0.36 0.20 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.99 6.05 -51.93 -0.31 0.68 16 33 H 0.05 0.62 6.84 -51.93 -0.36 0.26 16 34 H 0.04 0.55 6.97 -51.93 -0.36 0.18 16 35 H 0.05 0.94 7.76 -51.93 -0.40 0.53 16 36 H 0.04 0.64 7.65 -51.93 -0.40 0.25 16 37 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 LS Contribution 268.19 15.07 4.04 4.04 Total: -1.00 -27.98 268.19 -7.61 -35.59 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.94 Total: -0.60 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.21 Total: -18.66 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.48 Total: -36.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.98 -7.61 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306945898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.466 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds