Wall clock time and date at job start Mon Mar 30 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.47652 * 2 1 4 4 C 1.50703 * 109.46932 * 239.99704 * 2 1 3 5 5 H 1.08002 * 120.00250 * 240.00203 * 4 2 1 6 6 C 1.37873 * 120.00128 * 60.00483 * 4 2 1 7 7 N 1.31514 * 119.99670 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00421 * 179.97438 * 6 4 2 9 9 H 1.48511 * 109.46844 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47305 * 119.99865 * 8 6 4 11 11 H 1.48501 * 109.47345 * 240.00256 * 8 6 4 12 12 N 1.46906 * 109.46651 * 120.00482 * 2 1 3 13 13 C 1.48558 * 111.00503 * 62.28891 * 12 2 1 14 14 C 1.54378 * 104.59441 * 200.96146 * 13 12 2 15 15 H 1.08994 * 110.32392 * 142.85066 * 14 13 12 16 16 C 1.52998 * 110.32274 * 264.95628 * 14 13 12 17 17 C 1.54258 * 105.05969 * 23.84895 * 14 13 12 18 18 H 1.09007 * 110.31919 * 118.90051 * 17 14 13 19 19 C 1.53003 * 110.32673 * 241.00067 * 17 14 13 20 20 C 1.48560 * 110.99677 * 306.86512 * 12 2 1 21 21 H 1.08998 * 110.40919 * 40.26826 * 20 12 2 22 22 C 1.52995 * 110.41628 * 277.82277 * 20 12 2 23 23 H 1.08999 * 109.47629 * 186.32617 * 1 2 3 24 24 H 1.08994 * 109.46888 * 306.33207 * 1 2 3 25 25 H 1.09003 * 109.46760 * 66.32489 * 1 2 3 26 26 H 0.97000 * 119.99868 * 179.97438 * 7 6 4 27 27 H 1.09004 * 110.40897 * 319.73705 * 13 12 2 28 28 H 1.09000 * 110.40923 * 82.06287 * 13 12 2 29 29 H 1.09001 * 109.47510 * 58.54570 * 16 14 13 30 30 H 1.08998 * 109.47272 * 178.54550 * 16 14 13 31 31 H 1.09005 * 109.47138 * 298.54861 * 16 14 13 32 32 H 1.09001 * 109.46764 * 58.55070 * 19 17 14 33 33 H 1.08998 * 109.47233 * 178.54508 * 19 17 14 34 34 H 1.09001 * 109.47171 * 298.55329 * 19 17 14 35 35 H 1.09001 * 109.47056 * 66.31884 * 22 20 12 36 36 H 1.08999 * 109.47497 * 186.31864 * 22 20 12 37 37 H 1.09003 * 109.47238 * 306.32749 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1860 -4.8161 12 7 2.0196 -0.6926 1.1995 13 6 1.5890 -2.1144 1.2064 14 6 1.6834 -2.5423 2.6867 15 1 0.8651 -3.2167 2.9388 16 6 3.0295 -3.2161 2.9602 17 6 1.5673 -1.2311 3.4910 18 1 0.6909 -1.2606 4.1385 19 6 2.8324 -1.0029 4.3208 20 6 1.4125 -0.1214 2.4291 21 1 0.3586 0.1024 2.2640 22 6 2.1656 1.1386 2.8604 23 1 -0.3634 -1.0214 0.1132 24 1 -0.3633 0.6088 0.8278 25 1 -0.3633 0.4127 -0.9412 26 1 0.7089 1.1612 -3.4844 27 1 0.5627 -2.2025 0.8499 28 1 2.2573 -2.7170 0.5912 29 1 3.8375 -2.5266 2.7152 30 1 3.0919 -3.4890 4.0137 31 1 3.1184 -4.1127 2.3467 32 1 3.6983 -0.9638 3.6598 33 1 2.7464 -0.0611 4.8628 34 1 2.9538 -1.8210 5.0307 35 1 2.0244 1.9199 2.1135 36 1 1.7811 1.4808 3.8212 37 1 3.2279 0.9130 2.9536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306945898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:37 Heat of formation + Delta-G solvation = -18.253344 kcal Electronic energy + Delta-G solvation = -15267.723480 eV Core-core repulsion = 13044.044941 eV Total energy + Delta-G solvation = -2223.678539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79752 -36.48435 -34.04608 -33.16228 -30.29664 -28.31748 -27.46708 -26.60089 -25.30861 -22.82876 -20.43666 -19.40569 -18.04313 -17.58830 -16.39667 -15.70203 -15.36664 -15.13798 -14.92815 -14.59776 -13.80520 -13.65580 -13.19594 -13.11058 -12.96809 -12.70440 -12.64642 -12.33650 -12.28127 -12.20860 -12.10878 -11.87464 -11.47494 -11.30569 -11.08098 -10.97993 -10.78088 -10.50324 -8.89685 -8.11941 -6.23347 1.38764 1.40448 1.52365 2.41373 3.16718 3.50689 3.79600 3.86970 4.11815 4.36449 4.53641 4.60703 4.64948 4.70755 4.75482 4.81277 4.88743 4.96350 5.01378 5.02705 5.12308 5.13672 5.15953 5.23168 5.35165 5.38355 5.47326 5.55394 5.58725 5.67049 5.79379 5.85691 6.15903 6.48624 6.72829 6.92042 7.46354 8.94194 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040275 B = 0.009799 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.050319 B = 2856.742155 C = 3217.079925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.206 3.794 3 H 0.003 0.997 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.506 5.506 13 C 0.047 3.953 14 C -0.092 4.092 15 H 0.079 0.921 16 C -0.131 4.131 17 C -0.082 4.082 18 H 0.080 0.920 19 C -0.132 4.132 20 C 0.043 3.957 21 H 0.037 0.963 22 C -0.125 4.125 23 H 0.032 0.968 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.025 0.975 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 -5.036 12.233 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.098 3.902 3 H 0.021 0.979 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.229 5.229 13 C -0.081 4.081 14 C -0.111 4.111 15 H 0.097 0.903 16 C -0.188 4.188 17 C -0.101 4.101 18 H 0.099 0.901 19 C -0.189 4.189 20 C -0.066 4.066 21 H 0.055 0.945 22 C -0.182 4.182 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.858 -4.863 12.088 13.161 hybrid contribution -0.905 -0.048 -1.505 1.757 sum 0.953 -4.911 10.582 11.705 Atomic orbital electron populations 1.22223 1.00692 0.98420 1.00609 1.19102 0.89878 0.93227 0.87964 0.97869 1.21421 1.30389 1.12248 0.91093 0.92827 1.25712 0.95462 0.95845 1.01892 1.70023 1.37954 1.24256 1.23869 0.85497 0.78089 0.78642 0.79351 1.19277 1.20616 1.20663 1.65532 1.53559 1.02062 1.01772 1.22958 0.97738 0.90911 0.96522 1.21974 0.99202 0.96650 0.93285 0.90288 1.21808 0.95960 0.99376 1.01631 1.21914 0.99697 0.93003 0.95492 0.90130 1.21881 0.96500 1.01705 0.98828 1.22852 0.96402 0.95959 0.91355 0.94550 1.21679 1.00967 0.95512 1.00092 0.94947 0.95467 0.92005 0.93023 0.95671 0.92523 0.93015 0.90782 0.93386 0.93024 0.92088 0.91326 0.95578 0.90505 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.08 8.20 71.98 0.59 -7.49 16 2 C 0.21 10.82 2.43 44.17 0.11 10.93 16 3 H 0.00 0.20 7.74 -2.39 -0.02 0.18 16 4 C -0.51 -29.04 8.06 25.60 0.21 -28.84 16 5 H 0.05 3.05 6.82 -2.91 -0.02 3.03 16 6 C 0.01 0.51 5.29 84.65 0.45 0.96 16 7 N -0.92 -54.19 11.29 21.45 0.24 -53.95 16 8 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.51 -22.10 5.13 -836.08 -4.29 -26.39 16 13 C 0.05 1.87 5.03 86.45 0.43 2.30 16 14 C -0.09 -2.73 3.65 -9.90 -0.04 -2.77 16 15 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 16 C -0.13 -3.37 7.93 71.98 0.57 -2.80 16 17 C -0.08 -2.31 3.57 -9.90 -0.04 -2.35 16 18 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 19 C -0.13 -3.12 6.76 71.98 0.49 -2.63 16 20 C 0.04 1.55 2.60 45.06 0.12 1.66 16 21 H 0.04 1.42 5.49 -2.39 -0.01 1.41 16 22 C -0.13 -4.10 8.17 71.98 0.59 -3.52 16 23 H 0.03 1.56 5.89 -2.39 -0.01 1.55 16 24 H 0.03 1.24 6.30 -2.39 -0.02 1.22 16 25 H 0.06 3.47 5.93 -2.39 -0.01 3.45 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.03 1.08 5.69 -2.38 -0.01 1.06 16 28 H 0.06 2.40 7.04 -2.39 -0.02 2.38 16 29 H 0.05 1.49 6.58 -2.39 -0.02 1.47 16 30 H 0.07 1.51 7.01 -2.39 -0.02 1.49 16 31 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.05 1.40 6.05 -2.39 -0.01 1.38 16 33 H 0.06 1.30 6.84 -2.39 -0.02 1.28 16 34 H 0.07 1.32 6.97 -2.39 -0.02 1.31 16 35 H 0.03 0.95 7.76 -2.39 -0.02 0.94 16 36 H 0.08 2.01 7.65 -2.39 -0.02 1.99 16 37 H 0.06 2.05 6.72 -2.39 -0.02 2.04 16 Total: -1.00 -61.13 268.19 2.49 -58.64 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.03 Total: 9.47 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 3.48 Total: -34.54 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -4.05 Total: -80.34 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -61.13 2.49 -58.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306945898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.384 kcal (2) G-P(sol) polarization free energy of solvation -61.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds