Wall clock time and date at job start Mon Mar 30 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47563 * 2 1 4 4 C 1.50702 * 109.47022 * 240.00225 * 2 1 3 5 5 H 1.08003 * 119.99746 * 240.00036 * 4 2 1 6 6 C 1.37877 * 120.00148 * 60.00313 * 4 2 1 7 7 N 1.31514 * 119.99668 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00130 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46917 * 89.99786 * 8 6 4 10 10 H 1.48500 * 109.47282 * 209.99975 * 8 6 4 11 11 H 1.48501 * 109.47117 * 329.99830 * 8 6 4 12 12 N 1.46904 * 109.47240 * 120.00578 * 2 1 3 13 13 C 1.48557 * 111.00096 * 64.24238 * 12 2 1 14 14 C 1.54375 * 104.59379 * 159.04176 * 13 12 2 15 15 H 1.09004 * 110.32337 * 95.04539 * 14 13 12 16 16 C 1.52996 * 110.32459 * 217.14784 * 14 13 12 17 17 C 1.54261 * 105.06183 * 336.15098 * 14 13 12 18 18 H 1.09004 * 110.31952 * 240.99836 * 17 14 13 19 19 C 1.52996 * 110.32692 * 118.89798 * 17 14 13 20 20 C 1.48558 * 111.00260 * 179.66390 * 12 2 1 21 21 H 1.09005 * 110.41065 * 319.73884 * 20 12 2 22 22 C 1.53004 * 110.41214 * 82.17736 * 20 12 2 23 23 H 1.09000 * 109.47308 * 172.28835 * 1 2 3 24 24 H 1.09001 * 109.46999 * 52.28891 * 1 2 3 25 25 H 1.09003 * 109.47518 * 292.29261 * 1 2 3 26 26 H 0.97003 * 119.99657 * 180.02562 * 7 6 4 27 27 H 1.08998 * 110.41195 * 277.82062 * 13 12 2 28 28 H 1.08999 * 110.40978 * 40.14700 * 13 12 2 29 29 H 1.08998 * 109.47072 * 58.55213 * 16 14 13 30 30 H 1.09000 * 109.47339 * 178.54546 * 16 14 13 31 31 H 1.09001 * 109.47394 * 298.54889 * 16 14 13 32 32 H 1.09002 * 109.47474 * 61.44837 * 19 17 14 33 33 H 1.08997 * 109.47631 * 181.45431 * 19 17 14 34 34 H 1.09011 * 109.46757 * 301.45091 * 19 17 14 35 35 H 1.09005 * 109.46739 * 53.23963 * 22 20 12 36 36 H 1.09000 * 109.47253 * 173.24280 * 22 20 12 37 37 H 1.09000 * 109.47047 * 293.24309 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8304 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1613 -4.4124 10 1 2.4873 -0.1400 -5.1121 11 1 3.6308 -1.7564 -3.7120 12 7 2.0196 -0.6926 1.1994 13 6 1.6289 -2.1258 1.1834 14 6 2.6193 -2.8098 2.1500 15 1 2.1822 -2.8908 3.1452 16 6 3.0035 -4.1946 1.6251 17 6 3.8533 -1.8846 2.1805 18 1 4.7345 -2.4170 1.8223 19 6 4.0900 -1.3609 3.5984 20 6 3.5046 -0.7195 1.2297 21 1 3.9018 -0.9105 0.2327 22 6 4.0511 0.5996 1.7794 23 1 -0.3634 -1.0184 -0.1379 24 1 -0.3633 0.6286 -0.8130 25 1 -0.3634 0.3898 0.9509 26 1 0.7090 1.1616 -3.4844 27 1 0.6059 -2.2449 1.5402 28 1 1.7305 -2.5363 0.1788 29 1 3.4497 -4.0971 0.6354 30 1 3.7221 -4.6540 2.3039 31 1 2.1125 -4.8194 1.5620 32 1 4.2839 -2.1991 4.2677 33 1 4.9484 -0.6892 3.5991 34 1 3.2061 -0.8212 3.9386 35 1 3.5855 0.8129 2.7416 36 1 5.1307 0.5204 1.9077 37 1 3.8265 1.4053 1.0805 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306945899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:40 Heat of formation + Delta-G solvation = -12.418926 kcal Electronic energy + Delta-G solvation = -15286.074738 eV Core-core repulsion = 13062.649198 eV Total energy + Delta-G solvation = -2223.425540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.02257 -34.50325 -32.12412 -31.77382 -28.65694 -27.56251 -25.19106 -24.26022 -23.94297 -20.62709 -19.25598 -18.35787 -16.11896 -15.36076 -14.60172 -14.35402 -13.59736 -13.48463 -13.01212 -12.76708 -12.45517 -12.05381 -11.63612 -11.56647 -11.37722 -11.14858 -10.96665 -10.89934 -10.71790 -10.57060 -10.06368 -9.95499 -9.87678 -9.81280 -9.67801 -9.50391 -9.11520 -8.36967 -7.14938 -5.97348 -4.08266 3.27118 3.34451 3.36884 4.41054 5.08292 5.19108 5.26697 5.29169 5.54644 5.74672 5.86431 5.88320 6.01904 6.11781 6.17375 6.26079 6.28232 6.36031 6.49675 6.56837 6.61325 6.63701 6.77747 6.91367 6.99309 7.04757 7.05723 7.10479 7.26496 7.60003 7.73489 8.01970 8.20790 8.30587 8.45471 9.02221 9.58098 11.03884 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.010934 C = 0.010150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.356077 B = 2560.217010 C = 2757.898620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.196 3.804 3 H 0.039 0.961 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.507 5.507 13 C 0.041 3.959 14 C -0.095 4.095 15 H 0.067 0.933 16 C -0.141 4.141 17 C -0.090 4.090 18 H 0.062 0.938 19 C -0.135 4.135 20 C 0.065 3.935 21 H 0.063 0.937 22 C -0.130 4.130 23 H 0.025 0.975 24 H 0.077 0.923 25 H 0.013 0.987 26 H 0.260 0.740 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 -5.002 8.035 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.057 0.943 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.713 3.287 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.231 5.231 13 C -0.087 4.087 14 C -0.114 4.114 15 H 0.086 0.914 16 C -0.198 4.198 17 C -0.109 4.109 18 H 0.081 0.919 19 C -0.192 4.192 20 C -0.044 4.044 21 H 0.081 0.919 22 C -0.188 4.188 23 H 0.044 0.956 24 H 0.096 0.904 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.969 -4.564 8.345 10.307 hybrid contribution 0.576 -0.899 -1.804 2.097 sum 4.545 -5.464 6.541 9.659 Atomic orbital electron populations 1.21710 0.97809 0.99889 0.98894 1.19365 0.92316 0.94517 0.84923 0.94332 1.21686 1.31752 1.12769 0.91683 0.92406 1.24907 0.94908 0.94825 0.98803 1.69907 1.36536 1.22687 1.23333 0.86705 0.79246 0.79546 0.83171 1.20737 1.21214 1.20054 1.65707 1.06437 1.10682 1.40259 1.23012 0.97172 0.90233 0.98278 1.21983 0.96064 0.94030 0.99355 0.91446 1.21830 1.00625 0.96582 1.00811 1.21972 0.96984 0.96183 0.95783 0.91940 1.21836 1.01554 0.99996 0.95840 1.22505 0.90846 0.93541 0.97543 0.91870 1.21709 0.98499 0.97522 1.01063 0.95554 0.90417 0.96752 0.92992 0.92187 0.92161 0.92729 0.93438 0.93050 0.94083 0.92993 0.92080 0.92520 0.93758 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.64 37.15 0.32 -2.77 16 2 C 0.20 4.94 2.37 -68.87 -0.16 4.78 16 3 H 0.04 1.08 7.53 -51.93 -0.39 0.69 16 4 C -0.54 -14.49 6.49 -34.44 -0.22 -14.71 16 5 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -25.21 11.41 55.43 0.63 -24.58 16 8 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.51 -10.99 5.08 -215.63 -1.10 -12.08 16 13 C 0.04 0.83 4.87 -2.19 -0.01 0.82 16 14 C -0.10 -1.57 3.30 -89.24 -0.29 -1.86 16 15 H 0.07 1.05 7.71 -51.93 -0.40 0.65 16 16 C -0.14 -2.04 8.91 37.16 0.33 -1.71 16 17 C -0.09 -1.48 3.22 -89.24 -0.29 -1.77 16 18 H 0.06 0.98 7.71 -51.93 -0.40 0.58 16 19 C -0.14 -1.91 7.74 37.16 0.29 -1.62 16 20 C 0.06 1.27 2.60 -66.07 -0.17 1.10 16 21 H 0.06 1.42 6.21 -51.93 -0.32 1.10 16 22 C -0.13 -2.32 8.15 37.16 0.30 -2.01 16 23 H 0.03 0.63 7.44 -51.93 -0.39 0.24 16 24 H 0.08 2.08 6.32 -51.93 -0.33 1.75 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.06 1.19 7.88 -51.93 -0.41 0.78 16 28 H 0.06 1.34 5.64 -51.93 -0.29 1.05 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.68 6.83 -51.93 -0.35 0.33 16 34 H 0.06 0.92 7.57 -51.92 -0.39 0.53 16 35 H 0.06 0.96 6.74 -51.93 -0.35 0.61 16 36 H 0.04 0.68 7.63 -51.93 -0.40 0.28 16 37 H 0.05 1.01 7.61 -51.93 -0.40 0.62 16 LS Contribution 276.45 15.07 4.17 4.17 Total: -1.00 -27.45 276.45 -7.69 -35.14 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.37 Total: -0.88 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 0.00 Total: -18.00 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.46 Total: -36.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.45 -7.69 -35.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306945899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.719 kcal (2) G-P(sol) polarization free energy of solvation -27.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds