Wall clock time and date at job start Mon Mar 30 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47359 * 2 1 4 4 C 1.53002 * 109.47005 * 120.00499 * 2 1 3 5 5 H 1.09002 * 109.47070 * 184.99640 * 4 2 1 6 6 C 1.52997 * 109.46817 * 304.99460 * 4 2 1 7 7 N 1.46899 * 109.47394 * 64.99602 * 4 2 1 8 8 C 1.47441 * 111.00045 * 59.87422 * 7 4 2 9 9 C 1.54317 * 107.23428 * 123.26022 * 8 7 4 10 10 C 1.55144 * 103.01793 * 22.28300 * 9 8 7 11 11 H 1.08998 * 110.98935 * 82.47490 * 10 9 8 12 12 C 1.50701 * 110.98824 * 206.25867 * 10 9 8 13 13 H 1.07991 * 120.00061 * 118.55276 * 12 10 9 14 14 C 1.37879 * 119.99821 * 298.54168 * 12 10 9 15 15 N 1.31512 * 120.00240 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99800 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47193 * 60.00513 * 16 14 12 18 18 H 1.48503 * 109.47111 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47350 * 300.00054 * 16 14 12 20 20 C 1.47846 * 111.00254 * 180.71933 * 7 4 2 21 21 H 1.09003 * 109.46952 * 300.00522 * 1 2 3 22 22 H 1.09001 * 109.47027 * 59.99536 * 1 2 3 23 23 H 1.08997 * 109.47805 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46877 * 239.99971 * 2 1 3 25 25 H 1.09006 * 109.46918 * 179.97438 * 3 2 1 26 26 H 1.08988 * 109.47178 * 299.99622 * 3 2 1 27 27 H 1.08997 * 109.47151 * 60.00624 * 3 2 1 28 28 H 1.08998 * 109.47533 * 179.97438 * 6 4 2 29 29 H 1.08996 * 109.47853 * 300.00202 * 6 4 2 30 30 H 1.09002 * 109.47153 * 60.00231 * 6 4 2 31 31 H 1.09004 * 109.88638 * 242.66621 * 8 7 4 32 32 H 1.09000 * 109.88931 * 3.85149 * 8 7 4 33 33 H 1.08995 * 110.70855 * 140.66504 * 9 8 7 34 34 H 1.09004 * 110.70449 * 263.90227 * 9 8 7 35 35 H 0.96995 * 119.99988 * 179.97438 * 15 14 12 36 36 H 1.09000 * 110.37160 * 332.46537 * 20 7 4 37 37 H 1.08999 * 110.37162 * 94.80456 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1263 -0.6445 1.2951 6 6 1.4300 -0.0763 2.4953 7 7 1.6513 -2.1368 1.1903 8 6 2.2199 -2.7917 -0.0020 9 6 3.0525 -3.9941 0.4902 10 6 2.4474 -4.2896 1.8878 11 1 1.5453 -4.8955 1.8025 12 6 3.4591 -4.9559 2.7842 13 1 3.7705 -4.4738 3.6990 14 6 3.9870 -6.1813 2.4365 15 7 3.6080 -6.7684 1.3224 16 14 5.2405 -7.0075 3.5480 17 1 4.6379 -7.2428 4.8846 18 1 5.6498 -8.3054 2.9535 19 1 6.4310 -6.1310 3.6890 20 6 2.1133 -2.8636 2.3921 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9562 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.7928 -0.5905 3.3852 29 1 1.7183 0.9739 2.5390 30 1 0.3436 -0.1532 2.4494 31 1 1.4171 -3.1382 -0.6530 32 1 2.8602 -2.0923 -0.5394 33 1 2.9247 -4.8491 -0.1737 34 1 4.1054 -3.7248 0.5752 35 1 3.9797 -7.6302 1.0776 36 1 3.0037 -2.3884 2.8039 37 1 1.3217 -2.9014 3.1404 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306983930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:13 Heat of formation + Delta-G solvation = -16.475768 kcal Electronic energy + Delta-G solvation = -14823.389452 eV Core-core repulsion = 12599.787995 eV Total energy + Delta-G solvation = -2223.601458 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.85667 -35.68393 -32.68852 -30.48313 -28.76059 -27.20736 -26.94047 -24.84371 -22.80650 -20.47745 -19.42474 -18.25543 -16.42249 -15.38824 -15.27042 -14.44608 -14.26567 -13.79836 -12.89800 -12.80193 -12.47735 -12.22515 -12.02468 -11.81723 -11.67765 -11.22196 -11.08449 -10.95408 -10.78787 -10.63910 -10.53916 -10.31923 -10.05728 -9.87720 -9.53011 -9.16946 -8.80784 -8.36715 -7.49355 -6.00281 -4.03664 3.32213 3.36882 3.39345 4.42764 4.67813 5.04531 5.11445 5.32930 5.42122 5.64973 5.70653 5.74202 5.82550 5.85116 6.01776 6.08926 6.13945 6.19606 6.23351 6.27842 6.37535 6.47416 6.57834 6.58860 6.65291 6.73015 6.92335 7.19988 7.24685 7.68382 7.79312 7.84905 7.97264 8.05703 8.45662 8.98243 9.60392 11.09285 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.057749 B = 0.007281 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.742151 B = 3844.493248 C = 4018.933205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.147 4.147 4 C 0.082 3.918 5 H 0.033 0.967 6 C -0.146 4.146 7 N -0.527 5.527 8 C 0.038 3.962 9 C -0.117 4.117 10 C 0.048 3.952 11 H 0.035 0.965 12 C -0.515 4.515 13 H 0.054 0.946 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.049 3.951 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.260 0.740 36 H 0.034 0.966 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 12.121 -2.147 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.027 4.027 5 H 0.051 0.949 6 C -0.203 4.203 7 N -0.252 5.252 8 C -0.089 4.089 9 C -0.155 4.155 10 C 0.029 3.971 11 H 0.053 0.947 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.078 4.078 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.881 11.950 -2.282 12.770 hybrid contribution 1.707 -0.477 0.556 1.858 sum -2.174 11.473 -1.726 11.804 Atomic orbital electron populations 1.21760 0.94869 1.02588 1.00239 1.21187 0.96674 0.95108 0.98050 1.21881 1.00655 0.96499 1.01403 1.21724 0.96521 0.89739 0.94746 0.94938 1.21929 1.01763 0.99263 0.97350 1.63632 1.57548 1.00542 1.03464 1.22895 0.96969 0.96413 0.92654 1.22673 0.97391 0.95319 1.00162 1.19726 0.95970 0.89675 0.91706 0.94664 1.21021 1.23941 1.03694 1.06718 0.92739 1.24963 0.96628 0.97066 0.95150 1.69954 1.43423 1.16422 1.22883 0.86686 0.81820 0.78672 0.80965 1.20235 1.21304 1.20385 1.23130 0.96817 0.96391 0.91446 0.92923 0.94106 0.91392 0.91298 0.93130 0.93029 0.92577 0.92718 0.92943 0.91766 0.92119 0.94551 0.90972 0.93604 0.93009 0.94802 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.59 37.16 0.32 -1.47 16 2 C -0.09 -1.26 2.52 -90.62 -0.23 -1.49 16 3 C -0.15 -1.68 8.95 37.16 0.33 -1.35 16 4 C 0.08 1.32 1.43 -67.71 -0.10 1.22 16 5 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 6 C -0.15 -2.09 8.34 37.16 0.31 -1.78 16 7 N -0.53 -10.10 4.48 -223.30 -1.00 -11.10 16 8 C 0.04 0.76 6.08 -2.84 -0.02 0.74 16 9 C -0.12 -2.78 5.64 -24.91 -0.14 -2.92 16 10 C 0.05 1.23 2.96 -89.63 -0.27 0.96 16 11 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.52 -14.31 8.55 -34.44 -0.29 -14.61 16 13 H 0.05 1.49 7.79 -52.49 -0.41 1.08 16 14 C 0.06 1.78 5.34 -17.82 -0.10 1.69 16 15 N -0.89 -25.71 12.12 55.43 0.67 -25.04 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.05 1.06 4.84 -2.30 -0.01 1.05 16 21 H 0.05 0.65 6.35 -51.93 -0.33 0.32 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 1.01 7.75 -51.93 -0.40 0.60 16 24 H 0.07 1.01 6.36 -51.92 -0.33 0.68 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.53 8.14 -51.94 -0.42 0.11 16 27 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 28 H 0.05 0.83 7.04 -51.93 -0.37 0.46 16 29 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 30 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.67 6.37 -51.93 -0.33 0.34 16 33 H 0.07 1.85 7.54 -51.93 -0.39 1.46 16 34 H 0.05 1.14 8.03 -51.93 -0.42 0.72 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.03 0.74 7.47 -51.93 -0.39 0.36 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 280.12 15.07 4.22 4.22 Total: -1.00 -27.94 280.12 -7.78 -35.72 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.47 Total: -2.26 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -0.19 Total: -17.95 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.33 Total: -36.14 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.94 -7.78 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306983930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.242 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds