Wall clock time and date at job start Mon Mar 30 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47359 * 2 1 4 4 C 1.53002 * 109.47005 * 120.00499 * 2 1 3 5 5 H 1.09002 * 109.47070 * 184.99640 * 4 2 1 6 6 C 1.52997 * 109.46817 * 304.99460 * 4 2 1 7 7 N 1.46899 * 109.47394 * 64.99602 * 4 2 1 8 8 C 1.47441 * 111.00045 * 59.87422 * 7 4 2 9 9 C 1.54317 * 107.23428 * 123.26022 * 8 7 4 10 10 C 1.55144 * 103.01793 * 22.28300 * 9 8 7 11 11 H 1.08998 * 110.98935 * 82.47490 * 10 9 8 12 12 C 1.50701 * 110.98824 * 206.25867 * 10 9 8 13 13 H 1.07991 * 120.00061 * 118.55276 * 12 10 9 14 14 C 1.37879 * 119.99821 * 298.54168 * 12 10 9 15 15 N 1.31512 * 120.00240 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99800 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47193 * 60.00513 * 16 14 12 18 18 H 1.48503 * 109.47111 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47350 * 300.00054 * 16 14 12 20 20 C 1.47846 * 111.00254 * 180.71933 * 7 4 2 21 21 H 1.09003 * 109.46952 * 300.00522 * 1 2 3 22 22 H 1.09001 * 109.47027 * 59.99536 * 1 2 3 23 23 H 1.08997 * 109.47805 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46877 * 239.99971 * 2 1 3 25 25 H 1.09006 * 109.46918 * 179.97438 * 3 2 1 26 26 H 1.08988 * 109.47178 * 299.99622 * 3 2 1 27 27 H 1.08997 * 109.47151 * 60.00624 * 3 2 1 28 28 H 1.08998 * 109.47533 * 179.97438 * 6 4 2 29 29 H 1.08996 * 109.47853 * 300.00202 * 6 4 2 30 30 H 1.09002 * 109.47153 * 60.00231 * 6 4 2 31 31 H 1.09004 * 109.88638 * 242.66621 * 8 7 4 32 32 H 1.09000 * 109.88931 * 3.85149 * 8 7 4 33 33 H 1.08995 * 110.70855 * 140.66504 * 9 8 7 34 34 H 1.09004 * 110.70449 * 263.90227 * 9 8 7 35 35 H 0.96995 * 119.99988 * 179.97438 * 15 14 12 36 36 H 1.09000 * 110.37160 * 332.46537 * 20 7 4 37 37 H 1.08999 * 110.37162 * 94.80456 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1263 -0.6445 1.2951 6 6 1.4300 -0.0763 2.4953 7 7 1.6513 -2.1368 1.1903 8 6 2.2199 -2.7917 -0.0020 9 6 3.0525 -3.9941 0.4902 10 6 2.4474 -4.2896 1.8878 11 1 1.5453 -4.8955 1.8025 12 6 3.4591 -4.9559 2.7842 13 1 3.7705 -4.4738 3.6990 14 6 3.9870 -6.1813 2.4365 15 7 3.6080 -6.7684 1.3224 16 14 5.2405 -7.0075 3.5480 17 1 4.6379 -7.2428 4.8846 18 1 5.6498 -8.3054 2.9535 19 1 6.4310 -6.1310 3.6890 20 6 2.1133 -2.8636 2.3921 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9562 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.7928 -0.5905 3.3852 29 1 1.7183 0.9739 2.5390 30 1 0.3436 -0.1532 2.4494 31 1 1.4171 -3.1382 -0.6530 32 1 2.8602 -2.0923 -0.5394 33 1 2.9247 -4.8491 -0.1737 34 1 4.1054 -3.7248 0.5752 35 1 3.9797 -7.6302 1.0776 36 1 3.0037 -2.3884 2.8039 37 1 1.3217 -2.9014 3.1404 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306983930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:12 Heat of formation + Delta-G solvation = -32.654517 kcal Electronic energy + Delta-G solvation = -14824.091015 eV Core-core repulsion = 12599.787995 eV Total energy + Delta-G solvation = -2224.303021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37232 -37.16388 -34.65279 -31.98601 -30.53800 -28.74896 -27.91660 -26.74195 -24.23956 -22.08417 -21.34122 -19.59214 -18.38572 -16.96474 -16.75770 -16.31492 -15.88002 -14.94929 -14.44864 -14.25576 -13.97158 -13.76582 -13.52708 -13.11106 -13.00469 -12.94868 -12.71622 -12.61041 -12.30428 -12.24733 -11.92192 -11.72771 -11.52527 -11.30863 -11.18425 -11.05791 -10.88761 -10.49922 -9.08941 -8.15019 -6.26176 1.40057 1.41585 1.49363 2.40935 3.14397 3.20383 3.88610 4.01687 4.11973 4.30387 4.36084 4.51497 4.56880 4.60854 4.66144 4.72146 4.81910 4.93204 4.96156 5.02601 5.11155 5.13255 5.17748 5.23543 5.26977 5.35972 5.39648 5.56351 5.59403 5.63467 5.80919 5.91287 6.11018 6.37270 6.42839 6.83057 7.41719 8.93910 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.057749 B = 0.007281 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.742151 B = 3844.493248 C = 4018.933205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.142 4.142 4 C 0.077 3.923 5 H 0.021 0.979 6 C -0.141 4.141 7 N -0.525 5.525 8 C 0.050 3.950 9 C -0.108 4.108 10 C 0.038 3.962 11 H 0.003 0.997 12 C -0.536 4.536 13 H 0.053 0.947 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.065 3.935 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.029 0.971 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 13.884 -1.900 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 C -0.199 4.199 4 C -0.032 4.032 5 H 0.039 0.961 6 C -0.198 4.198 7 N -0.250 5.250 8 C -0.077 4.077 9 C -0.147 4.147 10 C 0.019 3.981 11 H 0.021 0.979 12 C -0.575 4.575 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.557 5.557 16 Si 0.782 3.218 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.062 4.062 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.820 13.731 -2.032 14.396 hybrid contribution 1.660 -1.019 0.463 2.002 sum -2.159 12.711 -1.569 12.989 Atomic orbital electron populations 1.21719 0.94145 1.01586 1.01608 1.21174 0.97226 0.96302 0.96091 1.21839 1.00611 0.94730 1.02740 1.21913 0.96120 0.87947 0.97213 0.96146 1.21905 1.01816 1.00458 0.95653 1.63661 1.57222 1.02114 1.01980 1.22763 0.96762 0.95116 0.93101 1.22463 0.96967 0.96211 0.99061 1.19692 0.94304 0.91390 0.92739 0.97928 1.21373 1.24585 1.04390 1.07127 0.92832 1.25776 0.98529 0.97694 0.96541 1.70086 1.44504 1.16708 1.24367 0.85638 0.79368 0.77638 0.79180 1.19439 1.20843 1.19676 1.22859 0.96721 0.94251 0.92408 0.92006 0.92330 0.93553 0.92264 0.93223 0.91435 0.91535 0.93967 0.90353 0.91351 0.91511 0.92674 0.93450 0.95247 0.92975 0.95266 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.59 71.98 0.62 -2.51 16 2 C -0.09 -2.24 2.52 -10.79 -0.03 -2.26 16 3 C -0.14 -2.77 8.95 71.98 0.64 -2.12 16 4 C 0.08 2.34 1.43 44.92 0.06 2.40 16 5 H 0.02 0.69 8.10 -2.39 -0.02 0.67 16 6 C -0.14 -3.72 8.34 71.98 0.60 -3.12 16 7 N -0.53 -19.78 4.48 -860.38 -3.86 -23.64 16 8 C 0.05 1.98 6.08 86.65 0.53 2.51 16 9 C -0.11 -5.30 5.64 31.78 0.18 -5.12 16 10 C 0.04 1.98 2.96 -10.15 -0.03 1.95 16 11 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 12 C -0.54 -30.38 8.55 25.60 0.22 -30.16 16 13 H 0.05 2.96 7.79 -2.92 -0.02 2.94 16 14 C 0.01 0.78 5.34 84.66 0.45 1.23 16 15 N -0.92 -54.31 12.12 21.45 0.26 -54.05 16 16 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.07 2.83 4.84 86.77 0.42 3.25 16 21 H 0.06 1.33 6.35 -2.39 -0.02 1.31 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.29 7.75 -2.39 -0.02 1.27 16 24 H 0.06 1.60 6.36 -2.38 -0.02 1.59 16 25 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.17 6.56 -2.39 -0.02 1.15 16 28 H 0.04 1.21 7.04 -2.39 -0.02 1.19 16 29 H 0.08 1.66 6.57 -2.39 -0.02 1.64 16 30 H 0.07 1.75 6.35 -2.39 -0.02 1.73 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 1.97 6.37 -2.39 -0.02 1.95 16 33 H 0.05 2.51 7.54 -2.39 -0.02 2.50 16 34 H 0.03 1.49 8.03 -2.38 -0.02 1.47 16 35 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.03 1.29 7.47 -2.39 -0.02 1.27 16 37 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -60.29 280.12 3.11 -57.19 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.01 Total: 8.22 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.67 Total: -33.94 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -3.60 Total: -77.69 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -60.29 3.11 -57.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306983930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.533 kcal (2) G-P(sol) polarization free energy of solvation -60.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds