Wall clock time and date at job start Mon Mar 30 2020 03:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 C 1.53003 * 109.46809 * 119.99712 * 2 1 3 5 5 H 1.09001 * 109.47243 * 184.19884 * 4 2 1 6 6 C 1.53007 * 109.47192 * 304.19537 * 4 2 1 7 7 N 1.46896 * 109.47316 * 64.19362 * 4 2 1 8 8 C 1.47853 * 110.99785 * 58.20239 * 7 4 2 9 9 C 1.54903 * 104.79896 * 146.36515 * 8 7 4 10 10 C 1.55141 * 101.65237 * 322.93060 * 9 8 7 11 11 H 1.09001 * 110.85594 * 277.20388 * 10 9 8 12 12 C 1.50696 * 110.71006 * 154.03840 * 10 9 8 13 13 H 1.08004 * 119.99665 * 246.40050 * 12 10 9 14 14 C 1.37874 * 120.00360 * 66.39472 * 12 10 9 15 15 N 1.31508 * 120.00393 * 179.72707 * 14 12 10 16 16 Si 1.86808 * 119.99615 * 0.02562 * 14 12 10 17 17 H 1.48502 * 109.46542 * 269.72209 * 16 14 12 18 18 H 1.48496 * 109.47233 * 29.71905 * 16 14 12 19 19 H 1.48496 * 109.46897 * 149.72225 * 16 14 12 20 20 C 1.47444 * 111.00205 * 179.04111 * 7 4 2 21 21 H 1.08999 * 109.47294 * 300.00239 * 1 2 3 22 22 H 1.09000 * 109.46745 * 60.00058 * 1 2 3 23 23 H 1.08994 * 109.47113 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47082 * 239.99520 * 2 1 3 25 25 H 1.08996 * 109.47289 * 62.21291 * 3 2 1 26 26 H 1.09000 * 109.46529 * 182.21242 * 3 2 1 27 27 H 1.08997 * 109.47027 * 302.21033 * 3 2 1 28 28 H 1.08996 * 109.46717 * 300.00289 * 6 4 2 29 29 H 1.09001 * 109.46744 * 60.00041 * 6 4 2 30 30 H 1.09000 * 109.47049 * 179.97438 * 6 4 2 31 31 H 1.09002 * 110.37154 * 265.19648 * 8 7 4 32 32 H 1.09002 * 110.37205 * 27.42088 * 8 7 4 33 33 H 1.08999 * 110.99150 * 204.83760 * 9 8 7 34 34 H 1.09001 * 110.99174 * 81.01748 * 9 8 7 35 35 H 0.97003 * 120.00205 * 180.28041 * 15 14 12 36 36 H 1.09004 * 109.88383 * 117.34039 * 20 7 4 37 37 H 1.08999 * 109.88721 * 356.15232 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1274 -0.6566 1.2878 6 6 1.4456 -0.0634 2.4963 7 7 1.6348 -2.1323 1.1999 8 6 2.1563 -2.7910 -0.0168 9 6 2.4477 -4.2493 0.4168 10 6 2.9764 -4.0470 1.8612 11 1 4.0352 -3.7880 1.8542 12 6 2.7371 -5.2801 2.6938 13 1 2.0462 -5.2458 3.5233 14 6 3.4000 -6.4520 2.3968 15 7 3.1952 -7.5265 3.1267 16 14 4.5954 -6.5110 0.9625 17 1 3.8693 -6.9070 -0.2709 18 1 5.2039 -5.1702 0.7697 19 1 5.6631 -7.5026 1.2485 20 6 2.1293 -2.8658 2.3794 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.7095 1.9448 0.9091 26 1 3.1293 1.4427 -0.0397 27 1 1.6447 1.9677 -0.8695 28 1 1.7462 0.9837 2.5330 29 1 0.3582 -0.1280 2.4579 30 1 1.8085 -0.5775 3.3863 31 1 1.4076 -2.7729 -0.8087 32 1 3.0719 -2.3022 -0.3500 33 1 3.2098 -4.7006 -0.2184 34 1 1.5360 -4.8467 0.4149 35 1 3.6647 -8.3499 2.9202 36 1 1.2880 -3.2405 2.9625 37 1 2.7454 -2.2087 2.9932 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306983931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:16 Heat of formation + Delta-G solvation = -10.639735 kcal Electronic energy + Delta-G solvation = -14886.135025 eV Core-core repulsion = 12662.786637 eV Total energy + Delta-G solvation = -2223.348388 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.06644 -35.89846 -32.65512 -30.88505 -29.16163 -27.46384 -27.03336 -24.88679 -22.74411 -20.85172 -19.34023 -18.47601 -16.91254 -15.95540 -15.27229 -14.47087 -14.16904 -13.60669 -13.17430 -12.95967 -12.78199 -12.58304 -12.28787 -11.93979 -11.74525 -11.52408 -11.25902 -11.09671 -10.84445 -10.65624 -10.55863 -10.22426 -10.06722 -9.98741 -9.79222 -9.43227 -9.03331 -8.53769 -7.65502 -6.06269 -4.04763 3.28394 3.37013 3.38483 4.42512 4.47653 4.93534 5.01450 5.23994 5.30459 5.52596 5.56904 5.63155 5.69223 5.76037 5.88439 5.91288 5.95542 6.04495 6.05326 6.09128 6.16747 6.26989 6.36612 6.38517 6.53853 6.62095 6.67297 6.81055 6.88032 7.10678 7.35945 7.68487 7.77467 7.80426 8.53836 8.97592 9.56500 11.06985 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053192 B = 0.008094 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.269366 B = 3458.353567 C = 3663.912430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.147 4.147 4 C 0.080 3.920 5 H 0.033 0.967 6 C -0.147 4.147 7 N -0.525 5.525 8 C 0.044 3.956 9 C -0.134 4.134 10 C -0.004 4.004 11 H 0.029 0.971 12 C -0.505 4.505 13 H 0.075 0.925 14 C 0.071 3.929 15 N -0.902 5.902 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.267 1.267 19 H -0.293 1.293 20 C 0.059 3.941 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 14.761 -6.341 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.029 4.029 5 H 0.051 0.949 6 C -0.205 4.205 7 N -0.249 5.249 8 C -0.083 4.083 9 C -0.172 4.172 10 C -0.023 4.023 11 H 0.047 0.953 12 C -0.543 4.543 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.540 5.540 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.192 1.192 19 H -0.220 1.220 20 C -0.068 4.068 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.705 14.572 -6.306 16.106 hybrid contribution 1.647 -0.198 -0.798 1.841 sum -1.058 14.374 -7.104 16.068 Atomic orbital electron populations 1.21769 0.94717 1.02666 1.00393 1.21148 0.96789 0.95204 0.97807 1.21891 1.00607 0.96409 1.01590 1.21765 0.96502 0.89525 0.95071 0.94876 1.21975 1.02005 0.99310 0.97188 1.63667 1.57685 1.00643 1.02925 1.22982 0.96939 0.95443 0.92982 1.23088 1.01073 0.94182 0.98841 1.20349 0.94797 0.95034 0.92166 0.95261 1.20961 1.25958 0.92718 1.14650 0.90681 1.24982 0.96298 0.95588 0.96178 1.69899 1.43024 1.01477 1.39616 0.86900 0.81270 0.77744 0.83254 1.20296 1.19229 1.22006 1.22828 0.98148 0.94344 0.91513 0.92781 0.94041 0.91356 0.91477 0.92429 0.93153 0.92950 0.92771 0.91601 0.92503 0.91614 0.94941 0.93284 0.90639 0.92705 0.90657 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.61 37.16 0.32 -1.37 16 2 C -0.09 -1.16 2.53 -90.61 -0.23 -1.39 16 3 C -0.15 -1.56 8.99 37.16 0.33 -1.23 16 4 C 0.08 1.20 1.42 -67.71 -0.10 1.11 16 5 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 6 C -0.15 -1.99 8.36 37.16 0.31 -1.67 16 7 N -0.52 -9.41 4.45 -223.28 -0.99 -10.40 16 8 C 0.04 0.80 5.32 -2.30 -0.01 0.79 16 9 C -0.13 -2.89 5.44 -24.59 -0.13 -3.03 16 10 C 0.00 -0.09 2.32 -89.95 -0.21 -0.30 16 11 H 0.03 0.72 7.03 -51.93 -0.36 0.36 16 12 C -0.50 -14.22 9.05 -34.44 -0.31 -14.53 16 13 H 0.08 2.28 7.78 -52.48 -0.41 1.88 16 14 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 15 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 16 Si 0.88 21.94 24.81 -169.99 -4.22 17.72 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.43 6.45 56.52 0.36 -6.07 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 C 0.06 1.21 5.73 -2.83 -0.02 1.19 16 21 H 0.05 0.63 6.35 -51.93 -0.33 0.30 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 24 H 0.07 0.90 6.83 -51.93 -0.35 0.55 16 25 H 0.06 0.58 6.44 -51.93 -0.33 0.24 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 29 H 0.07 0.88 6.35 -51.93 -0.33 0.55 16 30 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 31 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 32 H 0.03 0.56 7.56 -51.93 -0.39 0.17 16 33 H 0.05 1.06 5.59 -51.93 -0.29 0.77 16 34 H 0.07 1.71 8.04 -51.93 -0.42 1.29 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.08 1.64 7.63 -51.93 -0.40 1.25 16 37 H 0.04 0.76 6.41 -51.93 -0.33 0.43 16 LS Contribution 272.86 15.07 4.11 4.11 Total: -1.00 -29.21 272.86 -6.78 -35.99 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.31 Total: -1.98 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -0.14 Total: -18.48 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.22 Total: -37.36 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.22 Total: 17.72 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.21 -6.78 -35.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306983931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.349 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds