Wall clock time and date at job start Mon Mar 30 2020 03:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 C 1.53003 * 109.46809 * 119.99712 * 2 1 3 5 5 H 1.09001 * 109.47243 * 184.19884 * 4 2 1 6 6 C 1.53007 * 109.47192 * 304.19537 * 4 2 1 7 7 N 1.46896 * 109.47316 * 64.19362 * 4 2 1 8 8 C 1.47853 * 110.99785 * 58.20239 * 7 4 2 9 9 C 1.54903 * 104.79896 * 146.36515 * 8 7 4 10 10 C 1.55141 * 101.65237 * 322.93060 * 9 8 7 11 11 H 1.09001 * 110.85594 * 277.20388 * 10 9 8 12 12 C 1.50696 * 110.71006 * 154.03840 * 10 9 8 13 13 H 1.08004 * 119.99665 * 246.40050 * 12 10 9 14 14 C 1.37874 * 120.00360 * 66.39472 * 12 10 9 15 15 N 1.31508 * 120.00393 * 179.72707 * 14 12 10 16 16 Si 1.86808 * 119.99615 * 0.02562 * 14 12 10 17 17 H 1.48502 * 109.46542 * 269.72209 * 16 14 12 18 18 H 1.48496 * 109.47233 * 29.71905 * 16 14 12 19 19 H 1.48496 * 109.46897 * 149.72225 * 16 14 12 20 20 C 1.47444 * 111.00205 * 179.04111 * 7 4 2 21 21 H 1.08999 * 109.47294 * 300.00239 * 1 2 3 22 22 H 1.09000 * 109.46745 * 60.00058 * 1 2 3 23 23 H 1.08994 * 109.47113 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47082 * 239.99520 * 2 1 3 25 25 H 1.08996 * 109.47289 * 62.21291 * 3 2 1 26 26 H 1.09000 * 109.46529 * 182.21242 * 3 2 1 27 27 H 1.08997 * 109.47027 * 302.21033 * 3 2 1 28 28 H 1.08996 * 109.46717 * 300.00289 * 6 4 2 29 29 H 1.09001 * 109.46744 * 60.00041 * 6 4 2 30 30 H 1.09000 * 109.47049 * 179.97438 * 6 4 2 31 31 H 1.09002 * 110.37154 * 265.19648 * 8 7 4 32 32 H 1.09002 * 110.37205 * 27.42088 * 8 7 4 33 33 H 1.08999 * 110.99150 * 204.83760 * 9 8 7 34 34 H 1.09001 * 110.99174 * 81.01748 * 9 8 7 35 35 H 0.97003 * 120.00205 * 180.28041 * 15 14 12 36 36 H 1.09004 * 109.88383 * 117.34039 * 20 7 4 37 37 H 1.08999 * 109.88721 * 356.15232 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1274 -0.6566 1.2878 6 6 1.4456 -0.0634 2.4963 7 7 1.6348 -2.1323 1.1999 8 6 2.1563 -2.7910 -0.0168 9 6 2.4477 -4.2493 0.4168 10 6 2.9764 -4.0470 1.8612 11 1 4.0352 -3.7880 1.8542 12 6 2.7371 -5.2801 2.6938 13 1 2.0462 -5.2458 3.5233 14 6 3.4000 -6.4520 2.3968 15 7 3.1952 -7.5265 3.1267 16 14 4.5954 -6.5110 0.9625 17 1 3.8693 -6.9070 -0.2709 18 1 5.2039 -5.1702 0.7697 19 1 5.6631 -7.5026 1.2485 20 6 2.1293 -2.8658 2.3794 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.7095 1.9448 0.9091 26 1 3.1293 1.4427 -0.0397 27 1 1.6447 1.9677 -0.8695 28 1 1.7462 0.9837 2.5330 29 1 0.3582 -0.1280 2.4579 30 1 1.8085 -0.5775 3.3863 31 1 1.4076 -2.7729 -0.8087 32 1 3.0719 -2.3022 -0.3500 33 1 3.2098 -4.7006 -0.2184 34 1 1.5360 -4.8467 0.4149 35 1 3.6647 -8.3499 2.9202 36 1 1.2880 -3.2405 2.9625 37 1 2.7454 -2.2087 2.9932 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306983931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:16 Heat of formation + Delta-G solvation = -29.480474 kcal Electronic energy + Delta-G solvation = -14886.952021 eV Core-core repulsion = 12662.786637 eV Total energy + Delta-G solvation = -2224.165384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47556 -37.25747 -34.67867 -32.37068 -30.79243 -28.87535 -27.92366 -26.67649 -24.15888 -22.34953 -21.12707 -19.65211 -19.01345 -17.33938 -16.69739 -16.14008 -15.66913 -14.96967 -14.69562 -14.43971 -14.33639 -13.91097 -13.72498 -13.15194 -13.01606 -12.96622 -12.78239 -12.56609 -12.23982 -12.07284 -11.86993 -11.66769 -11.58584 -11.42291 -11.31249 -11.13910 -11.10226 -10.72628 -9.10983 -8.30918 -6.34444 1.30258 1.32990 1.43244 2.31970 3.03334 3.10879 3.84515 3.98437 4.03476 4.17674 4.26361 4.37672 4.49540 4.56029 4.61470 4.70155 4.74669 4.80120 4.92352 4.95266 5.02096 5.09602 5.12614 5.16404 5.20676 5.31538 5.35561 5.36194 5.48362 5.59181 5.63813 5.71091 6.14762 6.28157 6.39786 6.71147 7.30398 8.85997 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053192 B = 0.008094 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.269366 B = 3458.353567 C = 3663.912430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.143 4.143 4 C 0.076 3.924 5 H 0.028 0.972 6 C -0.144 4.144 7 N -0.527 5.527 8 C 0.054 3.946 9 C -0.133 4.133 10 C -0.009 4.009 11 H 0.027 0.973 12 C -0.511 4.511 13 H 0.033 0.967 14 C 0.013 3.987 15 N -0.950 5.950 16 Si 0.944 3.056 17 H -0.263 1.263 18 H -0.249 1.249 19 H -0.292 1.292 20 C 0.069 3.931 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.266 0.734 36 H 0.052 0.948 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 17.075 -8.457 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.032 4.032 5 H 0.046 0.954 6 C -0.201 4.201 7 N -0.251 5.251 8 C -0.074 4.074 9 C -0.171 4.171 10 C -0.029 4.029 11 H 0.045 0.955 12 C -0.549 4.549 13 H 0.051 0.949 14 C -0.184 4.184 15 N -0.591 5.591 16 Si 0.769 3.231 17 H -0.188 1.188 18 H -0.173 1.173 19 H -0.219 1.219 20 C -0.058 4.058 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.150 16.916 -8.429 19.021 hybrid contribution 1.402 -0.900 -0.049 1.666 sum -0.748 16.016 -8.478 18.137 Atomic orbital electron populations 1.21732 0.94334 1.01657 1.01503 1.21139 0.97043 0.96316 0.96143 1.21853 1.00718 0.94802 1.02669 1.21936 0.96384 0.87784 0.97141 0.95437 1.21959 1.01887 1.00484 0.95813 1.63665 1.57665 1.02091 1.01703 1.22946 0.98303 0.92794 0.93319 1.22965 1.00230 0.96641 0.97258 1.20309 0.95206 0.94152 0.93221 0.95508 1.21225 1.24769 0.94870 1.14072 0.94876 1.25859 0.98343 0.95024 0.99175 1.70049 1.44762 1.02347 1.41909 0.85861 0.78850 0.78544 0.79862 1.18830 1.17336 1.21876 1.22562 0.96886 0.93760 0.92611 0.92309 0.92359 0.93391 0.91813 0.91743 0.93005 0.91500 0.90288 0.91590 0.93939 0.89545 0.93494 0.92874 0.92360 0.92533 0.92913 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.61 71.98 0.62 -2.29 16 2 C -0.09 -1.95 2.53 -10.79 -0.03 -1.98 16 3 C -0.14 -2.48 8.99 71.98 0.65 -1.83 16 4 C 0.08 2.09 1.42 44.92 0.06 2.15 16 5 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 6 C -0.14 -3.57 8.36 71.98 0.60 -2.97 16 7 N -0.53 -18.07 4.45 -860.32 -3.83 -21.90 16 8 C 0.05 1.81 5.32 86.77 0.46 2.27 16 9 C -0.13 -5.57 5.44 31.98 0.17 -5.39 16 10 C -0.01 -0.43 2.32 -10.36 -0.02 -0.46 16 11 H 0.03 1.29 7.03 -2.39 -0.02 1.27 16 12 C -0.51 -29.74 9.05 25.60 0.23 -29.50 16 13 H 0.03 2.14 7.78 -2.91 -0.02 2.11 16 14 C 0.01 0.76 5.46 84.66 0.46 1.23 16 15 N -0.95 -60.22 13.96 21.45 0.30 -59.93 16 16 Si 0.94 45.02 24.81 68.60 1.70 46.72 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.25 -11.09 6.45 99.48 0.64 -10.45 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 20 C 0.07 2.86 5.73 86.65 0.50 3.36 16 21 H 0.06 1.20 6.35 -2.39 -0.02 1.18 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.05 1.23 7.73 -2.39 -0.02 1.21 16 24 H 0.06 1.48 6.83 -2.39 -0.02 1.46 16 25 H 0.06 1.03 6.44 -2.39 -0.02 1.02 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.56 6.49 -2.39 -0.02 1.54 16 29 H 0.07 1.63 6.35 -2.39 -0.02 1.62 16 30 H 0.04 1.16 6.56 -2.39 -0.02 1.15 16 31 H 0.09 2.59 8.12 -2.39 -0.02 2.57 16 32 H 0.05 1.47 7.56 -2.39 -0.02 1.45 16 33 H 0.05 2.17 5.59 -2.39 -0.01 2.15 16 34 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 35 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.05 2.38 7.63 -2.39 -0.02 2.37 16 37 H 0.05 1.86 6.41 -2.39 -0.02 1.85 16 Total: -1.00 -63.92 272.86 2.83 -61.09 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.95 Total: 9.42 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.71 Total: -35.41 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -3.53 Total: -81.82 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.70 Total: 46.72 kcal Total: -63.92 2.83 -61.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306983931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.609 kcal (2) G-P(sol) polarization free energy of solvation -63.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds