Wall clock time and date at job start Mon Mar 30 2020 03:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 C 1.52993 * 109.47304 * 120.00036 * 2 1 3 5 5 H 1.09004 * 109.47422 * 295.42209 * 4 2 1 6 6 C 1.53003 * 109.47580 * 175.41907 * 4 2 1 7 7 N 1.46900 * 109.47380 * 55.41640 * 4 2 1 8 8 C 1.47900 * 111.00279 * 185.74924 * 7 4 2 9 9 C 1.53995 * 107.05754 * 214.15769 * 8 7 4 10 10 C 1.54593 * 105.14182 * 1.22712 * 9 8 7 11 11 H 1.09001 * 110.72446 * 263.42289 * 10 9 8 12 12 C 1.50691 * 110.72575 * 140.31778 * 10 9 8 13 13 H 1.08008 * 119.99874 * 241.45271 * 12 10 9 14 14 C 1.37876 * 120.00548 * 61.45286 * 12 10 9 15 15 N 1.31521 * 119.99647 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00236 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47249 * 60.00040 * 16 14 12 18 18 H 1.48506 * 109.46738 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47071 * 299.99422 * 16 14 12 20 20 C 1.48535 * 110.99797 * 68.35229 * 7 4 2 21 21 H 1.08991 * 109.47379 * 174.94563 * 1 2 3 22 22 H 1.09000 * 109.46833 * 294.94232 * 1 2 3 23 23 H 1.09003 * 109.47039 * 54.94442 * 1 2 3 24 24 H 1.09004 * 109.47018 * 240.00142 * 2 1 3 25 25 H 1.09000 * 109.47225 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47178 * 299.99861 * 3 2 1 27 27 H 1.08993 * 109.47497 * 60.00044 * 3 2 1 28 28 H 1.08997 * 109.47050 * 68.31957 * 6 4 2 29 29 H 1.09001 * 109.47571 * 188.31830 * 6 4 2 30 30 H 1.09002 * 109.46600 * 308.31838 * 6 4 2 31 31 H 1.09003 * 109.91905 * 333.51054 * 8 7 4 32 32 H 1.09003 * 109.91609 * 94.80377 * 8 7 4 33 33 H 1.09004 * 110.30883 * 120.14702 * 9 8 7 34 34 H 1.09004 * 110.30689 * 242.20996 * 9 8 7 35 35 H 0.96992 * 119.99887 * 180.02562 * 15 14 12 36 36 H 1.08991 * 110.66889 * 278.15733 * 20 7 4 37 37 H 1.09002 * 110.66519 * 41.29007 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7452 -0.1622 2.1373 6 6 3.5657 -0.8218 1.1930 7 7 1.4621 -2.0706 1.3058 8 6 1.8231 -2.7492 2.5694 9 6 1.9850 -4.2464 2.2478 10 6 1.7257 -4.3634 0.7283 11 1 0.6929 -4.6530 0.5344 12 6 2.6799 -5.3450 0.0984 13 1 3.3693 -5.0144 -0.6644 14 6 2.6730 -6.6653 0.4959 15 7 1.8338 -7.0678 1.4252 16 14 3.8563 -7.8819 -0.2844 17 1 5.2529 -7.4408 -0.0392 18 1 3.6500 -9.2257 0.3131 19 1 3.6070 -7.9464 -1.7469 20 6 2.0012 -2.9266 0.2182 21 1 -0.3633 -1.0236 -0.0905 22 1 -0.3633 0.4334 0.9318 23 1 -0.3633 0.5903 -0.8413 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 3.9995 0.1724 1.2998 29 1 3.9179 -1.4608 2.0028 30 1 3.8666 -1.2487 0.2362 31 1 2.7618 -2.3478 2.9515 32 1 1.0304 -2.6109 3.3047 33 1 2.9960 -4.5773 2.4857 34 1 1.2546 -4.8340 2.8041 35 1 1.8291 -7.9964 1.7051 36 1 1.4706 -2.7416 -0.7157 37 1 3.0713 -2.7613 0.0932 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306983932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:20 Heat of formation + Delta-G solvation = -14.234811 kcal Electronic energy + Delta-G solvation = -14903.820156 eV Core-core repulsion = 12680.315874 eV Total energy + Delta-G solvation = -2223.504282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.94253 -35.48783 -32.77065 -30.55945 -28.36376 -28.04935 -26.39063 -24.53592 -22.93458 -20.46638 -19.53083 -18.42263 -16.48576 -15.17890 -14.92631 -14.40533 -14.21042 -13.71222 -13.23131 -13.11147 -12.59092 -12.12207 -11.97591 -11.78128 -11.27825 -11.19875 -11.08018 -11.01319 -10.74216 -10.58968 -10.47866 -10.36358 -10.05928 -9.93962 -9.54046 -9.13597 -8.70771 -8.35717 -7.55755 -5.98719 -4.01968 3.32765 3.37603 3.39908 4.44242 4.71335 5.00251 5.21807 5.34622 5.48418 5.56902 5.70027 5.72807 5.89197 5.91494 6.00079 6.06574 6.10419 6.15656 6.23184 6.27468 6.40322 6.49028 6.53375 6.67394 6.74102 6.77455 6.96786 7.23147 7.25107 7.68461 7.73261 7.84954 7.95703 8.09217 8.49692 9.00621 9.61970 11.11020 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048300 B = 0.007743 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.571921 B = 3615.144351 C = 3723.972819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.146 4.146 4 C 0.077 3.923 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.513 5.513 8 C 0.029 3.971 9 C -0.100 4.100 10 C 0.053 3.947 11 H 0.034 0.966 12 C -0.516 4.516 13 H 0.054 0.946 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.036 3.964 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 12.369 -0.291 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.032 4.032 5 H 0.088 0.912 6 C -0.246 4.246 7 N -0.236 5.236 8 C -0.099 4.099 9 C -0.139 4.139 10 C 0.034 3.966 11 H 0.052 0.948 12 C -0.555 4.555 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.091 4.091 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.130 12.271 -0.219 12.274 hybrid contribution 1.617 -0.804 -0.215 1.818 sum 1.487 11.468 -0.434 11.572 Atomic orbital electron populations 1.21655 0.94740 1.02562 1.00102 1.21087 0.96513 0.94914 0.97956 1.21868 1.00805 0.96434 1.01230 1.21794 0.91755 0.92045 0.97641 0.91240 1.22515 0.98120 1.01238 1.02691 1.64939 1.54193 1.00811 1.03646 1.23006 0.97708 0.97066 0.92075 1.22284 1.00927 0.90545 1.00126 1.19506 0.97159 0.89068 0.90870 0.94832 1.21078 1.19458 0.93363 1.21559 0.92796 1.24963 0.95599 0.98228 0.95046 1.69972 1.36453 1.16509 1.29687 0.86712 0.81535 0.80416 0.79633 1.20395 1.21320 1.20273 1.23435 0.97094 0.95061 0.93527 0.91224 0.93424 0.94136 0.91403 0.92862 0.93035 0.93023 0.92952 0.92253 0.91948 0.95029 0.92352 0.92984 0.92312 0.93032 0.92281 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.90 37.16 0.33 -1.51 16 2 C -0.09 -1.20 2.29 -90.62 -0.21 -1.41 16 3 C -0.15 -1.66 8.94 37.16 0.33 -1.33 16 4 C 0.08 1.21 1.89 -67.71 -0.13 1.08 16 5 H 0.07 1.06 8.13 -51.93 -0.42 0.63 16 6 C -0.19 -2.84 7.78 37.16 0.29 -2.55 16 7 N -0.51 -9.73 4.40 -222.50 -0.98 -10.71 16 8 C 0.03 0.58 6.45 -2.75 -0.02 0.56 16 9 C -0.10 -2.39 5.50 -25.37 -0.14 -2.53 16 10 C 0.05 1.34 2.99 -89.92 -0.27 1.08 16 11 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 12 C -0.52 -14.26 8.42 -34.44 -0.29 -14.55 16 13 H 0.05 1.47 7.78 -52.48 -0.41 1.06 16 14 C 0.06 1.77 5.33 -17.82 -0.10 1.68 16 15 N -0.89 -25.74 12.44 55.43 0.69 -25.05 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 C 0.04 0.76 4.93 -1.90 -0.01 0.75 16 21 H 0.07 1.11 7.66 -51.93 -0.40 0.71 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 1.02 7.40 -51.93 -0.38 0.64 16 25 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.67 6.98 -51.93 -0.36 0.31 16 29 H 0.06 0.97 6.10 -51.93 -0.32 0.65 16 30 H 0.06 1.00 6.42 -51.93 -0.33 0.67 16 31 H 0.03 0.59 5.83 -51.93 -0.30 0.29 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 1.31 7.84 -51.93 -0.41 0.91 16 34 H 0.06 1.48 8.05 -51.93 -0.42 1.06 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.06 1.23 7.85 -51.93 -0.41 0.82 16 37 H 0.04 0.90 5.44 -51.93 -0.28 0.62 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -27.83 280.52 -7.75 -35.59 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.47 Total: -1.70 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.20 Total: -18.73 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.29 Total: -35.76 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.83 -7.75 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306983932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.350 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds