Wall clock time and date at job start Mon Mar 30 2020 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 C 1.52993 * 109.47304 * 120.00036 * 2 1 3 5 5 H 1.09004 * 109.47422 * 295.42209 * 4 2 1 6 6 C 1.53003 * 109.47580 * 175.41907 * 4 2 1 7 7 N 1.46900 * 109.47380 * 55.41640 * 4 2 1 8 8 C 1.47900 * 111.00279 * 185.74924 * 7 4 2 9 9 C 1.53995 * 107.05754 * 214.15769 * 8 7 4 10 10 C 1.54593 * 105.14182 * 1.22712 * 9 8 7 11 11 H 1.09001 * 110.72446 * 263.42289 * 10 9 8 12 12 C 1.50691 * 110.72575 * 140.31778 * 10 9 8 13 13 H 1.08008 * 119.99874 * 241.45271 * 12 10 9 14 14 C 1.37876 * 120.00548 * 61.45286 * 12 10 9 15 15 N 1.31521 * 119.99647 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00236 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47249 * 60.00040 * 16 14 12 18 18 H 1.48506 * 109.46738 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47071 * 299.99422 * 16 14 12 20 20 C 1.48535 * 110.99797 * 68.35229 * 7 4 2 21 21 H 1.08991 * 109.47379 * 174.94563 * 1 2 3 22 22 H 1.09000 * 109.46833 * 294.94232 * 1 2 3 23 23 H 1.09003 * 109.47039 * 54.94442 * 1 2 3 24 24 H 1.09004 * 109.47018 * 240.00142 * 2 1 3 25 25 H 1.09000 * 109.47225 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47178 * 299.99861 * 3 2 1 27 27 H 1.08993 * 109.47497 * 60.00044 * 3 2 1 28 28 H 1.08997 * 109.47050 * 68.31957 * 6 4 2 29 29 H 1.09001 * 109.47571 * 188.31830 * 6 4 2 30 30 H 1.09002 * 109.46600 * 308.31838 * 6 4 2 31 31 H 1.09003 * 109.91905 * 333.51054 * 8 7 4 32 32 H 1.09003 * 109.91609 * 94.80377 * 8 7 4 33 33 H 1.09004 * 110.30883 * 120.14702 * 9 8 7 34 34 H 1.09004 * 110.30689 * 242.20996 * 9 8 7 35 35 H 0.96992 * 119.99887 * 180.02562 * 15 14 12 36 36 H 1.08991 * 110.66889 * 278.15733 * 20 7 4 37 37 H 1.09002 * 110.66519 * 41.29007 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7452 -0.1622 2.1373 6 6 3.5657 -0.8218 1.1930 7 7 1.4621 -2.0706 1.3058 8 6 1.8231 -2.7492 2.5694 9 6 1.9850 -4.2464 2.2478 10 6 1.7257 -4.3634 0.7283 11 1 0.6929 -4.6530 0.5344 12 6 2.6799 -5.3450 0.0984 13 1 3.3693 -5.0144 -0.6644 14 6 2.6730 -6.6653 0.4959 15 7 1.8338 -7.0678 1.4252 16 14 3.8563 -7.8819 -0.2844 17 1 5.2529 -7.4408 -0.0392 18 1 3.6500 -9.2257 0.3131 19 1 3.6070 -7.9464 -1.7469 20 6 2.0012 -2.9266 0.2182 21 1 -0.3633 -1.0236 -0.0905 22 1 -0.3633 0.4334 0.9318 23 1 -0.3633 0.5903 -0.8413 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 3.9995 0.1724 1.2998 29 1 3.9179 -1.4608 2.0028 30 1 3.8666 -1.2487 0.2362 31 1 2.7618 -2.3478 2.9515 32 1 1.0304 -2.6109 3.3047 33 1 2.9960 -4.5773 2.4857 34 1 1.2546 -4.8340 2.8041 35 1 1.8291 -7.9964 1.7051 36 1 1.4706 -2.7416 -0.7157 37 1 3.0713 -2.7613 0.0932 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306983932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:19 Heat of formation + Delta-G solvation = -30.281048 kcal Electronic energy + Delta-G solvation = -14904.515973 eV Core-core repulsion = 12680.315874 eV Total energy + Delta-G solvation = -2224.200099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45645 -36.96233 -34.68240 -32.13993 -30.05264 -29.57762 -27.52621 -26.46178 -24.33684 -21.98276 -21.34302 -19.83539 -18.46753 -16.91069 -16.54073 -16.24796 -15.41479 -15.00985 -14.80478 -14.57663 -14.19826 -13.53515 -13.33432 -12.99654 -12.94670 -12.88109 -12.71144 -12.53523 -12.37245 -12.26891 -12.02581 -11.60145 -11.53615 -11.40551 -11.16310 -11.06396 -10.77411 -10.49495 -9.09165 -8.13439 -6.24271 1.40526 1.42003 1.49715 2.42032 3.16863 3.27028 3.81409 4.09909 4.16858 4.30410 4.40985 4.46868 4.50468 4.59440 4.63993 4.77182 4.82919 4.92434 4.94299 5.04079 5.10209 5.14726 5.16551 5.25686 5.29019 5.33770 5.46819 5.57312 5.61412 5.64582 5.84058 5.90899 6.08586 6.38683 6.45697 6.86293 7.43622 8.95837 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048300 B = 0.007743 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.571921 B = 3615.144351 C = 3723.972819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C -0.139 4.139 4 C 0.074 3.926 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.516 5.516 8 C 0.039 3.961 9 C -0.091 4.091 10 C 0.043 3.957 11 H -0.004 1.004 12 C -0.535 4.535 13 H 0.054 0.946 14 C 0.013 3.987 15 N -0.919 5.919 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.054 3.946 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.059 0.941 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 14.139 -0.579 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.104 4.104 3 C -0.197 4.197 4 C -0.034 4.034 5 H 0.102 0.898 6 C -0.240 4.240 7 N -0.239 5.239 8 C -0.089 4.089 9 C -0.129 4.129 10 C 0.024 3.976 11 H 0.015 0.985 12 C -0.574 4.574 13 H 0.072 0.928 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.073 4.073 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.785 14.061 -0.512 14.092 hybrid contribution 1.289 -1.334 -0.124 1.859 sum 2.074 12.727 -0.636 12.911 Atomic orbital electron populations 1.21613 0.94726 1.01185 1.01219 1.21085 0.96509 0.96437 0.96331 1.21810 1.01142 0.94339 1.02391 1.21968 0.92184 0.90020 0.99259 0.89838 1.22455 0.97586 1.02553 1.01445 1.64925 1.54650 1.02019 1.02298 1.22884 0.99151 0.94049 0.92825 1.22054 0.98712 0.93371 0.98801 1.19468 0.94592 0.91365 0.92190 0.98534 1.21437 1.19826 0.94353 1.21739 0.92775 1.25774 0.97226 1.00095 0.95506 1.70106 1.37939 1.16852 1.30890 0.85665 0.79484 0.77953 0.78887 1.19562 1.20949 1.19521 1.23127 0.97137 0.92917 0.94167 0.93968 0.92769 0.92433 0.92795 0.92275 0.91830 0.91974 0.90080 0.93545 0.93138 0.93327 0.91005 0.95043 0.94768 0.93046 0.92222 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.90 71.98 0.64 -2.71 16 2 C -0.08 -2.17 2.29 -10.80 -0.02 -2.19 16 3 C -0.14 -2.67 8.94 71.98 0.64 -2.03 16 4 C 0.07 2.16 1.89 44.91 0.08 2.24 16 5 H 0.08 2.25 8.13 -2.39 -0.02 2.23 16 6 C -0.18 -5.07 7.78 71.98 0.56 -4.51 16 7 N -0.52 -19.13 4.40 -857.86 -3.77 -22.91 16 8 C 0.04 1.50 6.45 86.45 0.56 2.06 16 9 C -0.09 -4.44 5.50 31.47 0.17 -4.27 16 10 C 0.04 2.25 2.99 -10.34 -0.03 2.22 16 11 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 12 C -0.54 -30.19 8.42 25.60 0.22 -29.97 16 13 H 0.05 2.97 7.78 -2.91 -0.02 2.95 16 14 C 0.01 0.74 5.33 84.65 0.45 1.19 16 15 N -0.92 -54.65 12.44 21.45 0.27 -54.39 16 16 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C 0.05 2.30 4.93 86.65 0.43 2.73 16 21 H 0.04 1.31 7.66 -2.39 -0.02 1.29 16 22 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.05 1.54 7.40 -2.39 -0.02 1.52 16 25 H 0.06 1.07 6.75 -2.39 -0.02 1.06 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.79 6.98 -2.39 -0.02 1.77 16 29 H 0.05 1.41 6.10 -2.39 -0.01 1.39 16 30 H 0.05 1.52 6.42 -2.39 -0.02 1.51 16 31 H 0.05 1.73 5.83 -2.39 -0.01 1.72 16 32 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 34 H 0.03 1.79 8.05 -2.39 -0.02 1.77 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.06 2.51 7.85 -2.39 -0.02 2.49 16 37 H 0.04 1.82 5.44 -2.39 -0.01 1.81 16 Total: -1.00 -60.44 280.52 3.23 -57.22 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.01 Total: 9.11 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.70 Total: -35.25 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -3.51 Total: -77.29 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.44 3.23 -57.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306983932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.934 kcal (2) G-P(sol) polarization free energy of solvation -60.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds