Wall clock time and date at job start Mon Mar 30 2020 03:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47646 * 2 1 4 4 C 1.53007 * 109.47126 * 120.00545 * 2 1 3 5 5 H 1.08999 * 109.46859 * 59.99543 * 4 2 1 6 6 C 1.53004 * 109.46525 * 299.99895 * 4 2 1 7 7 N 1.46897 * 109.47096 * 179.97438 * 4 2 1 8 8 C 1.48527 * 111.00267 * 297.39386 * 7 4 2 9 9 C 1.54934 * 103.22902 * 200.28047 * 8 7 4 10 10 C 1.54595 * 102.92030 * 37.41483 * 9 8 7 11 11 H 1.09001 * 110.39501 * 97.00273 * 10 9 8 12 12 C 1.50706 * 110.30901 * 219.12903 * 10 9 8 13 13 H 1.07995 * 120.00167 * 115.43637 * 12 10 9 14 14 C 1.37879 * 119.99394 * 295.71336 * 12 10 9 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.47903 * 110.99490 * 179.97438 * 7 4 2 21 21 H 1.09003 * 109.47262 * 300.00058 * 1 2 3 22 22 H 1.09002 * 109.46958 * 59.99477 * 1 2 3 23 23 H 1.08999 * 109.47625 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46765 * 239.99906 * 2 1 3 25 25 H 1.08997 * 109.47312 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47146 * 300.00427 * 3 2 1 27 27 H 1.09006 * 109.46395 * 59.99927 * 3 2 1 28 28 H 1.09007 * 109.46710 * 180.02562 * 6 4 2 29 29 H 1.09005 * 109.46961 * 299.99645 * 6 4 2 30 30 H 1.08997 * 109.47552 * 59.99957 * 6 4 2 31 31 H 1.09007 * 110.66766 * 318.71627 * 8 7 4 32 32 H 1.08997 * 110.66775 * 81.67719 * 8 7 4 33 33 H 1.08999 * 110.72607 * 279.05553 * 9 8 7 34 34 H 1.09002 * 110.72302 * 155.76699 * 9 8 7 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.92113 * 26.49070 * 20 7 4 37 37 H 1.09002 * 110.07862 * 265.28464 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6766 -1.7490 1.2491 6 6 1.5299 -0.0001 2.4985 7 7 3.5090 -0.7219 1.2489 8 6 4.0408 -1.4694 0.0808 9 6 5.4886 -1.8154 0.5105 10 6 5.3378 -2.1213 2.0183 11 1 5.2535 -3.1957 2.1814 12 6 6.5116 -1.5675 2.7843 13 1 6.3612 -0.7796 3.5076 14 6 7.7782 -2.0627 2.5576 15 7 7.9622 -3.0180 1.6726 16 14 9.2330 -1.3767 3.5076 17 1 9.4210 -2.1572 4.7569 18 1 10.4584 -1.4737 2.6743 19 1 8.9763 0.0461 3.8466 20 6 4.0389 -1.4119 2.4450 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6767 1.9562 0.8901 28 1 1.8936 -0.5138 3.3885 29 1 1.8934 1.0276 2.4985 30 1 0.4400 -0.0001 2.4985 31 1 3.4628 -2.3776 -0.0904 32 1 4.0409 -0.8414 -0.8101 33 1 6.1512 -0.9643 0.3539 34 1 5.8512 -2.6919 -0.0265 35 1 8.8533 -3.3661 1.5129 36 1 3.3155 -2.1450 2.8018 37 1 4.2520 -0.6876 3.2312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306983933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:23 Heat of formation + Delta-G solvation = -16.026104 kcal Electronic energy + Delta-G solvation = -14834.481683 eV Core-core repulsion = 12610.899725 eV Total energy + Delta-G solvation = -2223.581959 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.80959 -35.72658 -32.66212 -30.52311 -28.72714 -27.23952 -26.88020 -24.74058 -22.86522 -20.58444 -19.13503 -18.44287 -16.45200 -15.68187 -15.12293 -14.41475 -14.26760 -13.46277 -13.12574 -12.70100 -12.64674 -12.30353 -11.88378 -11.75365 -11.46689 -11.33705 -11.10071 -10.91736 -10.73207 -10.60953 -10.48073 -10.29030 -10.05516 -9.88940 -9.59424 -9.19421 -8.73181 -8.35477 -7.59192 -5.96612 -3.98008 3.34184 3.40778 3.44912 4.48524 4.64815 5.03421 5.10170 5.36891 5.41121 5.62620 5.69306 5.72119 5.86029 5.89062 6.00650 6.08767 6.12193 6.16952 6.20790 6.27089 6.29698 6.44560 6.46534 6.63699 6.66091 6.77512 6.96168 7.19929 7.28454 7.55197 7.71084 7.92507 7.96699 8.09846 8.50296 9.03594 9.65077 11.13610 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054773 B = 0.007395 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.080525 B = 3785.367976 C = 3910.618001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.138 4.138 4 C 0.076 3.924 5 H 0.031 0.969 6 C -0.146 4.146 7 N -0.508 5.508 8 C 0.030 3.970 9 C -0.091 4.091 10 C 0.039 3.961 11 H 0.028 0.972 12 C -0.505 4.505 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.047 3.953 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.259 0.741 36 H 0.017 0.983 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 4.798 -2.729 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.195 4.195 4 C -0.033 4.033 5 H 0.049 0.951 6 C -0.203 4.203 7 N -0.233 5.233 8 C -0.097 4.097 9 C -0.129 4.129 10 C 0.020 3.980 11 H 0.046 0.954 12 C -0.543 4.543 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.080 4.080 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.479 5.238 -2.808 12.926 hybrid contribution 0.556 -0.635 0.475 0.969 sum -10.922 4.602 -2.333 12.080 Atomic orbital electron populations 1.21898 0.95861 1.01227 1.01485 1.21099 0.94550 0.97301 0.97745 1.21745 1.02678 0.94877 1.00172 1.21775 0.89681 0.96869 0.94984 0.95146 1.21929 0.99622 1.01550 0.97221 1.64750 1.05081 1.50158 1.03280 1.23316 0.98062 0.94745 0.93599 1.22388 0.91694 1.00390 0.98477 1.19502 0.90965 0.95236 0.92288 0.95403 1.21189 0.91593 1.19689 1.21862 0.92533 1.24983 0.98828 0.95028 0.95284 1.69970 1.22075 1.27297 1.33780 0.86627 0.82262 0.79500 0.79809 1.20820 1.21347 1.19890 1.23041 0.96763 0.95735 0.92442 0.92454 0.93038 0.93211 0.91614 0.91105 0.94168 0.92948 0.92765 0.91692 0.92869 0.95604 0.91948 0.92076 0.92489 0.93162 0.96483 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.84 37.16 0.33 -1.33 16 2 C -0.09 -1.21 2.53 -90.62 -0.23 -1.44 16 3 C -0.14 -1.86 8.68 37.16 0.32 -1.54 16 4 C 0.08 1.21 1.57 -67.71 -0.11 1.11 16 5 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 6 C -0.15 -2.09 8.39 37.16 0.31 -1.78 16 7 N -0.51 -9.82 4.34 -222.48 -0.97 -10.78 16 8 C 0.03 0.60 5.52 -1.90 -0.01 0.59 16 9 C -0.09 -2.16 5.75 -24.87 -0.14 -2.31 16 10 C 0.04 0.99 2.87 -90.39 -0.26 0.73 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 12 C -0.50 -14.06 8.38 -34.44 -0.29 -14.35 16 13 H 0.06 1.56 7.34 -52.49 -0.39 1.18 16 14 C 0.06 1.68 5.34 -17.82 -0.10 1.59 16 15 N -0.89 -25.97 12.62 55.43 0.70 -25.27 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.05 1.03 5.06 -2.74 -0.01 1.01 16 21 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.94 7.00 -51.93 -0.36 0.58 16 25 H 0.07 1.11 7.60 -51.93 -0.39 0.72 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.68 6.43 -51.93 -0.33 0.34 16 28 H 0.05 0.82 7.05 -51.93 -0.37 0.45 16 29 H 0.06 0.94 6.43 -51.93 -0.33 0.61 16 30 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 31 H 0.03 0.49 7.96 -51.92 -0.41 0.08 16 32 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 33 H 0.06 1.56 7.86 -51.93 -0.41 1.16 16 34 H 0.06 1.42 8.12 -51.93 -0.42 0.99 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.02 0.35 7.52 -51.93 -0.39 -0.04 16 37 H 0.07 1.54 7.39 -51.93 -0.38 1.16 16 LS Contribution 280.86 15.07 4.23 4.23 Total: -1.00 -28.19 280.86 -7.74 -35.93 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.50 Total: -2.99 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.18 Total: -17.70 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.27 Total: -36.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.19 -7.74 -35.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306983933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.900 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds