Wall clock time and date at job start Mon Mar 30 2020 02:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 N 1.46509 * 109.46981 * 119.99752 * 2 1 3 5 5 C 1.36938 * 119.99976 * 295.42352 * 4 2 1 6 6 H 1.07993 * 119.99860 * 234.90916 * 5 4 2 7 7 C 1.38811 * 119.99829 * 54.91183 * 5 4 2 8 8 N 1.31615 * 120.00631 * 37.49524 * 7 5 4 9 9 Si 1.86799 * 119.99800 * 217.49711 * 7 5 4 10 10 H 1.48508 * 109.47177 * 89.99747 * 9 7 5 11 11 H 1.48500 * 109.47373 * 209.99818 * 9 7 5 12 12 H 1.48504 * 109.47297 * 330.00051 * 9 7 5 13 13 C 1.46498 * 119.99858 * 115.42108 * 4 2 1 14 14 H 1.09007 * 110.01775 * 1.39353 * 13 4 2 15 15 C 1.53877 * 110.03280 * 122.83499 * 13 4 2 16 16 C 1.54458 * 106.68470 * 119.44227 * 15 13 4 17 17 C 1.54894 * 104.10140 * 23.34532 * 16 15 13 18 18 C 1.54265 * 110.03237 * 240.00369 * 13 4 2 19 19 H 1.09002 * 110.59821 * 335.83436 * 18 13 4 20 20 C 1.53000 * 110.48886 * 98.42783 * 18 13 4 21 21 H 1.09007 * 109.47010 * 309.35514 * 1 2 3 22 22 H 1.09001 * 109.46776 * 69.34908 * 1 2 3 23 23 H 1.08992 * 109.47590 * 189.35339 * 1 2 3 24 24 H 1.08999 * 109.47446 * 239.99571 * 2 1 3 25 25 H 1.09000 * 109.47587 * 174.40079 * 3 2 1 26 26 H 1.08998 * 109.47492 * 294.40259 * 3 2 1 27 27 H 1.08997 * 109.47145 * 54.40179 * 3 2 1 28 28 H 0.97000 * 120.00580 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.03080 * 238.57233 * 15 13 4 30 30 H 1.09003 * 110.03097 * 0.02562 * 15 13 4 31 31 H 1.09005 * 110.40748 * 264.75761 * 16 15 13 32 32 H 1.08998 * 110.66311 * 142.05647 * 16 15 13 33 33 H 1.09004 * 110.75345 * 203.89566 * 17 16 15 34 34 H 1.08997 * 110.75526 * 80.70610 * 17 16 15 35 35 H 1.08991 * 109.47263 * 176.22528 * 20 18 13 36 36 H 1.08998 * 109.46949 * 296.23257 * 20 18 13 37 37 H 1.09001 * 109.46663 * 56.23068 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.7665 -0.1706 2.4378 6 1 2.5829 0.0236 3.1176 7 6 0.4619 0.1068 2.8225 8 7 -0.5161 -0.6956 2.4594 9 14 0.0944 1.6191 3.8556 10 1 -0.1870 2.7721 2.9629 11 1 -1.0890 1.3570 4.7135 12 1 1.2671 1.9307 4.7118 13 6 2.7759 -1.9375 1.0642 14 1 2.9017 -2.1879 0.0108 15 6 4.1505 -1.7932 1.7406 16 6 4.2086 -2.8575 2.8584 17 6 3.1825 -3.9289 2.4131 18 6 2.0429 -3.0812 1.7953 19 1 1.3960 -2.6838 2.5775 20 6 1.2309 -3.9169 0.8038 21 1 -0.3633 0.6517 0.7947 22 1 -0.3633 0.3624 -0.9617 23 1 -0.3634 -1.0139 0.1670 24 1 1.8933 -0.5139 -0.8899 25 1 3.1254 1.4441 0.1003 26 1 1.7609 1.9266 -0.9358 27 1 1.5972 1.9844 0.8356 28 1 -1.4278 -0.5015 2.7280 29 1 4.9441 -1.9739 1.0156 30 1 4.2537 -0.7956 2.1675 31 1 3.9152 -2.4219 3.8136 32 1 5.2068 -3.2901 2.9261 33 1 2.8204 -4.4968 3.2702 34 1 3.6175 -4.5938 1.6669 35 1 0.7747 -4.7580 1.3257 36 1 0.4509 -3.2981 0.3603 37 1 1.8889 -4.2901 0.0190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307123426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:57 Heat of formation + Delta-G solvation = -5.808479 kcal Electronic energy + Delta-G solvation = -15562.544284 eV Core-core repulsion = 13339.405394 eV Total energy + Delta-G solvation = -2223.138889 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65462 -36.99437 -33.57078 -31.92047 -31.67943 -28.18088 -27.48818 -26.06748 -24.68536 -21.49446 -21.05112 -20.24638 -17.86383 -17.12215 -16.35774 -15.67929 -15.30144 -14.73712 -14.50125 -14.13320 -14.09453 -13.72194 -13.32412 -13.02521 -12.80856 -12.63973 -12.56219 -12.49893 -12.20264 -11.79532 -11.70176 -11.50018 -11.39221 -11.31131 -11.26107 -11.04476 -10.92345 -9.84282 -8.32422 -7.54697 -5.37546 1.40903 1.48996 1.53163 2.54927 3.18875 3.70224 4.05490 4.12640 4.31962 4.47264 4.68730 4.75506 4.79479 4.82274 4.88503 4.93243 5.01959 5.03238 5.07193 5.17217 5.19755 5.26134 5.32774 5.39614 5.40905 5.46776 5.64536 5.68775 5.75047 5.79581 5.91147 6.06685 6.09972 6.73177 7.40871 8.01957 8.70390 9.10398 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.013621 C = 0.012605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.546093 B = 2055.174519 C = 2220.820702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.170 3.830 3 C -0.135 4.135 4 N -0.584 5.584 5 C -0.275 4.275 6 H 0.029 0.971 7 C 0.025 3.975 8 N -0.857 5.857 9 Si 0.899 3.101 10 H -0.285 1.285 11 H -0.298 1.298 12 H -0.276 1.276 13 C 0.168 3.832 14 H 0.049 0.951 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.102 4.102 19 H 0.057 0.943 20 C -0.119 4.119 21 H 0.037 0.963 22 H 0.026 0.974 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.248 0.752 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.028 0.972 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 -3.421 -3.885 7.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.064 3.936 3 C -0.194 4.194 4 N -0.306 5.306 5 C -0.405 4.405 6 H 0.046 0.954 7 C -0.178 4.178 8 N -0.494 5.494 9 Si 0.728 3.272 10 H -0.212 1.212 11 H -0.225 1.225 12 H -0.201 1.201 13 C 0.062 3.938 14 H 0.068 0.932 15 C -0.166 4.166 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.122 4.122 19 H 0.075 0.925 20 C -0.177 4.177 21 H 0.056 0.944 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.563 -3.448 -3.882 7.610 hybrid contribution -0.837 1.054 0.865 1.600 sum 4.726 -2.394 -3.017 6.096 Atomic orbital electron populations 1.22221 0.98122 1.01124 0.97337 1.20502 0.92484 0.92152 0.88502 1.21937 1.00077 0.97715 0.99688 1.44046 1.63327 1.21989 1.01205 1.18185 0.89021 1.39143 0.94119 0.95400 1.25607 0.97559 0.98222 0.96455 1.70523 1.00096 1.32827 1.45982 0.86424 0.77030 0.84411 0.79383 1.21191 1.22517 1.20135 1.21317 0.90468 0.86334 0.95680 0.93249 1.22493 0.97848 0.98481 0.97766 1.22209 0.98878 0.96133 0.97680 1.22466 0.95909 0.96889 0.99739 1.22274 0.96404 0.95395 0.98150 0.92493 1.21537 0.99178 0.98355 0.98597 0.94360 0.95561 0.94090 0.93044 0.93549 0.92491 0.95089 0.94278 0.91868 0.93694 0.94096 0.90665 0.92755 0.90604 0.93616 0.95324 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 7.64 71.98 0.55 -5.37 16 2 C 0.17 7.37 3.37 44.99 0.15 7.53 16 3 C -0.14 -5.40 8.98 71.98 0.65 -4.75 16 4 N -0.58 -27.36 2.31 -650.26 -1.50 -28.87 16 5 C -0.27 -14.37 6.37 84.03 0.54 -13.84 16 6 H 0.03 1.58 7.26 -2.91 -0.02 1.56 16 7 C 0.03 1.35 3.47 84.86 0.29 1.65 16 8 N -0.86 -46.88 10.60 21.65 0.23 -46.65 16 9 Si 0.90 43.13 29.68 68.60 2.04 45.17 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 13 C 0.17 6.92 3.01 45.72 0.14 7.05 16 14 H 0.05 1.92 7.26 -2.38 -0.02 1.91 16 15 C -0.13 -4.68 6.25 31.39 0.20 -4.48 16 16 C -0.11 -3.73 6.85 31.74 0.22 -3.51 16 17 C -0.11 -3.71 6.32 31.89 0.20 -3.51 16 18 C -0.10 -4.15 3.04 -9.72 -0.03 -4.18 16 19 H 0.06 2.91 7.13 -2.39 -0.02 2.89 16 20 C -0.12 -4.40 9.12 71.98 0.66 -3.74 16 21 H 0.04 1.92 5.54 -2.38 -0.01 1.91 16 22 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.04 2.05 7.32 -2.39 -0.02 2.03 16 24 H 0.05 2.05 7.57 -2.39 -0.02 2.04 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.03 1.36 7.73 -2.39 -0.02 1.34 16 28 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.88 6.79 -2.39 -0.02 1.86 16 31 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 34 H 0.08 2.15 8.06 -2.39 -0.02 2.13 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.84 8.11 -2.39 -0.02 1.82 16 Total: -1.00 -55.24 282.69 5.32 -49.93 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.00 Total: 7.58 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.56 Total: -27.16 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.28 Total: -75.51 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.04 Total: 45.17 kcal Total: -55.24 5.32 -49.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307123426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.120 kcal (2) G-P(sol) polarization free energy of solvation -55.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds