Wall clock time and date at job start Mon Mar 30 2020 02:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47174 * 240.00189 * 2 1 3 5 5 H 1.08001 * 119.99700 * 239.99625 * 4 2 1 6 6 C 1.37870 * 119.99851 * 59.99718 * 4 2 1 7 7 N 1.31513 * 120.00123 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46989 * 90.00388 * 8 6 4 10 10 H 1.48498 * 109.47263 * 209.99967 * 8 6 4 11 11 H 1.48500 * 109.47133 * 330.00372 * 8 6 4 12 12 N 1.46901 * 109.47429 * 120.00114 * 2 1 3 13 13 C 1.46899 * 111.00179 * 166.87344 * 12 2 1 14 14 C 1.46899 * 111.00150 * 290.82743 * 12 2 1 15 15 H 1.08992 * 110.01974 * 225.68700 * 14 12 2 16 16 C 1.54271 * 110.02990 * 347.07729 * 14 12 2 17 17 C 1.54895 * 104.19523 * 142.89230 * 16 14 12 18 18 C 1.54892 * 102.74829 * 322.06082 * 17 16 14 19 19 C 1.53874 * 110.03280 * 104.24044 * 14 12 2 20 20 H 1.08998 * 110.02916 * 121.43243 * 19 14 12 21 21 C 1.52998 * 110.03104 * 0.02562 * 19 14 12 22 22 H 1.09006 * 109.47161 * 168.19920 * 1 2 3 23 23 H 1.09005 * 109.47068 * 288.19375 * 1 2 3 24 24 H 1.08991 * 109.47268 * 48.19823 * 1 2 3 25 25 H 0.97007 * 120.00047 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47397 * 174.31385 * 13 12 2 27 27 H 1.09007 * 109.47304 * 294.31455 * 13 12 2 28 28 H 1.08998 * 109.47495 * 54.31031 * 13 12 2 29 29 H 1.09005 * 110.48819 * 24.21818 * 16 14 12 30 30 H 1.08998 * 110.48963 * 261.57207 * 16 14 12 31 31 H 1.08994 * 110.75650 * 203.74618 * 17 16 14 32 32 H 1.08998 * 110.75107 * 80.37296 * 17 16 14 33 33 H 1.08994 * 110.48788 * 156.61837 * 18 17 16 34 34 H 1.09008 * 110.48259 * 279.26284 * 18 17 16 35 35 H 1.09002 * 109.47390 * 296.93606 * 21 19 14 36 36 H 1.08999 * 109.47442 * 56.93904 * 21 19 14 37 37 H 1.09005 * 109.47312 * 176.93766 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 3.4544 -0.9878 1.0879 14 6 1.7355 0.0881 2.4110 15 1 2.6176 0.1190 3.0504 16 6 1.3095 1.5207 2.0287 17 6 0.2131 1.8795 3.0623 18 6 -0.5515 0.5426 3.2275 19 6 0.5522 -0.5337 3.1731 20 1 0.8596 -0.8046 4.1831 21 6 0.0426 -1.7706 2.4307 22 1 -0.3634 -1.0060 -0.2102 23 1 -0.3633 0.3209 0.9763 24 1 -0.3633 0.6849 -0.7660 25 1 0.7088 1.1614 -3.4844 26 1 3.8129 -1.4086 2.0274 27 1 3.6163 -1.7051 0.2833 28 1 3.9987 -0.0689 0.8703 29 1 0.9020 1.5407 1.0179 30 1 2.1533 2.2053 2.1144 31 1 -0.4457 2.6556 2.6729 32 1 0.6596 2.1885 4.0074 33 1 -1.0658 0.5134 4.1880 34 1 -1.2595 0.4046 2.4102 35 1 -0.3357 -1.4767 1.4516 36 1 0.8591 -2.4818 2.3062 37 1 -0.7590 -2.2348 3.0055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307502887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:28 Heat of formation + Delta-G solvation = 23.898909 kcal Electronic energy + Delta-G solvation = -15539.524571 eV Core-core repulsion = 13317.673890 eV Total energy + Delta-G solvation = -2221.850680 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.37917 -34.89269 -32.50188 -30.60574 -29.45921 -27.53705 -24.92124 -24.35035 -23.10843 -20.89680 -19.84028 -17.57029 -16.35633 -15.79975 -14.96174 -14.48907 -13.52560 -13.30694 -13.15138 -13.02243 -12.10709 -12.06043 -11.83171 -11.50932 -11.05094 -10.89770 -10.66645 -10.64245 -10.49684 -10.21673 -10.09155 -10.04129 -9.90507 -9.82932 -9.40524 -9.32964 -8.65784 -8.36790 -6.95637 -5.98693 -4.01365 3.31759 3.38284 3.41155 4.43394 5.03789 5.16536 5.20676 5.34650 5.52184 5.86928 5.98355 6.04482 6.11319 6.14046 6.21607 6.29431 6.38197 6.44374 6.50404 6.60814 6.66839 6.80238 6.86602 6.94890 6.97818 7.06254 7.17402 7.20968 7.38802 7.62335 7.85679 7.90449 8.23967 8.40093 8.71032 9.05725 9.63306 11.08911 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041804 B = 0.010316 C = 0.009732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.639567 B = 2713.658135 C = 2876.343771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.207 3.793 3 H 0.011 0.989 4 C -0.510 4.510 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.528 5.528 13 C 0.040 3.960 14 C 0.082 3.918 15 H 0.051 0.949 16 C -0.175 4.175 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.081 4.081 20 H 0.053 0.947 21 C -0.136 4.136 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.259 0.741 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.120 0.880 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -0.214 9.055 9.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.101 3.899 3 H 0.029 0.971 4 C -0.548 4.548 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.252 5.252 13 C -0.108 4.108 14 C -0.028 4.028 15 H 0.070 0.930 16 C -0.212 4.212 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.100 4.100 20 H 0.072 0.928 21 C -0.193 4.193 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.031 0.969 29 H 0.137 0.863 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -1.058 -0.555 8.935 9.014 hybrid contribution 0.845 0.370 -0.907 1.294 sum -0.213 -0.185 8.028 8.033 Atomic orbital electron populations 1.22233 0.97861 1.00655 0.99277 1.19392 0.92400 0.92499 0.85606 0.97129 1.21328 1.31097 1.12296 0.90091 0.91871 1.24912 0.95232 0.95053 0.98909 1.69923 1.37039 1.22972 1.23274 0.86580 0.79190 0.79337 0.82761 1.20746 1.21426 1.20034 1.62350 1.14260 1.45713 1.02873 1.22245 0.89083 0.99675 0.99815 1.22282 0.96381 0.91142 0.92963 0.93028 1.23560 0.98265 0.96454 1.02949 1.22398 0.97804 0.97108 0.98577 1.22528 0.97952 0.94824 1.00632 1.21703 0.94873 0.95868 0.97596 0.92826 1.21901 0.99338 0.96711 1.01321 0.94430 0.94401 0.91129 0.93119 0.94453 0.90921 0.96914 0.86254 0.93315 0.92270 0.92719 0.92919 0.90915 0.89809 0.92345 0.95962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 6.17 37.16 0.23 -3.14 16 2 C 0.21 5.07 1.62 -68.86 -0.11 4.96 16 3 H 0.01 0.30 5.94 -51.93 -0.31 0.00 16 4 C -0.51 -13.79 7.93 -34.44 -0.27 -14.06 16 5 H 0.06 1.71 5.83 -52.49 -0.31 1.40 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.29 11.48 55.43 0.64 -24.65 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.53 -11.24 2.76 -226.95 -0.63 -11.87 16 13 C 0.04 0.81 8.78 60.06 0.53 1.34 16 14 C 0.08 1.52 3.05 -66.59 -0.20 1.32 16 15 H 0.05 0.92 7.47 -51.93 -0.39 0.53 16 16 C -0.17 -3.23 4.91 -25.07 -0.12 -3.36 16 17 C -0.12 -1.87 6.86 -24.73 -0.17 -2.04 16 18 C -0.12 -1.88 5.73 -25.07 -0.14 -2.03 16 19 C -0.08 -1.35 3.27 -89.51 -0.29 -1.65 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.14 -2.40 8.00 37.16 0.30 -2.10 16 22 H 0.04 0.91 6.92 -51.93 -0.36 0.55 16 23 H 0.04 0.78 2.20 -51.93 -0.11 0.67 16 24 H 0.07 1.83 6.49 -51.93 -0.34 1.49 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 27 H 0.07 1.54 6.08 -51.92 -0.32 1.22 16 28 H 0.01 0.26 8.12 -51.93 -0.42 -0.17 16 29 H 0.12 2.57 3.33 -51.93 -0.17 2.40 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.19 6.13 -51.92 -0.32 0.88 16 35 H 0.08 1.66 3.73 -51.93 -0.19 1.46 16 36 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 261.67 15.07 3.94 3.94 Total: -1.00 -27.27 261.67 -7.14 -34.41 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.71 Total: 1.02 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.36 Total: -19.19 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.01 Total: -36.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.27 -7.14 -34.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307502887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.309 kcal (2) G-P(sol) polarization free energy of solvation -27.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds