Wall clock time and date at job start Mon Mar 30 2020 02:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47174 * 240.00189 * 2 1 3 5 5 H 1.08001 * 119.99700 * 239.99625 * 4 2 1 6 6 C 1.37870 * 119.99851 * 59.99718 * 4 2 1 7 7 N 1.31513 * 120.00123 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46989 * 90.00388 * 8 6 4 10 10 H 1.48498 * 109.47263 * 209.99967 * 8 6 4 11 11 H 1.48500 * 109.47133 * 330.00372 * 8 6 4 12 12 N 1.46901 * 109.47429 * 120.00114 * 2 1 3 13 13 C 1.46899 * 111.00179 * 166.87344 * 12 2 1 14 14 C 1.46899 * 111.00150 * 290.82743 * 12 2 1 15 15 H 1.08992 * 110.01974 * 225.68700 * 14 12 2 16 16 C 1.54271 * 110.02990 * 347.07729 * 14 12 2 17 17 C 1.54895 * 104.19523 * 142.89230 * 16 14 12 18 18 C 1.54892 * 102.74829 * 322.06082 * 17 16 14 19 19 C 1.53874 * 110.03280 * 104.24044 * 14 12 2 20 20 H 1.08998 * 110.02916 * 121.43243 * 19 14 12 21 21 C 1.52998 * 110.03104 * 0.02562 * 19 14 12 22 22 H 1.09006 * 109.47161 * 168.19920 * 1 2 3 23 23 H 1.09005 * 109.47068 * 288.19375 * 1 2 3 24 24 H 1.08991 * 109.47268 * 48.19823 * 1 2 3 25 25 H 0.97007 * 120.00047 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47397 * 174.31385 * 13 12 2 27 27 H 1.09007 * 109.47304 * 294.31455 * 13 12 2 28 28 H 1.08998 * 109.47495 * 54.31031 * 13 12 2 29 29 H 1.09005 * 110.48819 * 24.21818 * 16 14 12 30 30 H 1.08998 * 110.48963 * 261.57207 * 16 14 12 31 31 H 1.08994 * 110.75650 * 203.74618 * 17 16 14 32 32 H 1.08998 * 110.75107 * 80.37296 * 17 16 14 33 33 H 1.08994 * 110.48788 * 156.61837 * 18 17 16 34 34 H 1.09008 * 110.48259 * 279.26284 * 18 17 16 35 35 H 1.09002 * 109.47390 * 296.93606 * 21 19 14 36 36 H 1.08999 * 109.47442 * 56.93904 * 21 19 14 37 37 H 1.09005 * 109.47312 * 176.93766 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 3.4544 -0.9878 1.0879 14 6 1.7355 0.0881 2.4110 15 1 2.6176 0.1190 3.0504 16 6 1.3095 1.5207 2.0287 17 6 0.2131 1.8795 3.0623 18 6 -0.5515 0.5426 3.2275 19 6 0.5522 -0.5337 3.1731 20 1 0.8596 -0.8046 4.1831 21 6 0.0426 -1.7706 2.4307 22 1 -0.3634 -1.0060 -0.2102 23 1 -0.3633 0.3209 0.9763 24 1 -0.3633 0.6849 -0.7660 25 1 0.7088 1.1614 -3.4844 26 1 3.8129 -1.4086 2.0274 27 1 3.6163 -1.7051 0.2833 28 1 3.9987 -0.0689 0.8703 29 1 0.9020 1.5407 1.0179 30 1 2.1533 2.2053 2.1144 31 1 -0.4457 2.6556 2.6729 32 1 0.6596 2.1885 4.0074 33 1 -1.0658 0.5134 4.1880 34 1 -1.2595 0.4046 2.4102 35 1 -0.3357 -1.4767 1.4516 36 1 0.8591 -2.4818 2.3062 37 1 -0.7590 -2.2348 3.0055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307502887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:28 Heat of formation + Delta-G solvation = 9.047120 kcal Electronic energy + Delta-G solvation = -15540.168592 eV Core-core repulsion = 13317.673890 eV Total energy + Delta-G solvation = -2222.494702 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91751 -36.54228 -34.44608 -32.00720 -31.34940 -29.04811 -26.92568 -25.79675 -24.74243 -22.59437 -21.29735 -19.13508 -18.33545 -17.29805 -16.64700 -16.37069 -15.16157 -14.93086 -14.63997 -14.55337 -13.88276 -13.67539 -13.41818 -13.10529 -12.83583 -12.74723 -12.47713 -12.16220 -12.04436 -11.90075 -11.78839 -11.68898 -11.35949 -11.30071 -11.00460 -10.92790 -10.60008 -10.40429 -8.69288 -8.08827 -6.18018 1.40469 1.41576 1.50880 2.43029 3.20482 3.44961 3.82511 3.87825 4.17149 4.53318 4.53438 4.60878 4.69135 4.79436 4.83954 4.87284 4.93500 4.99160 5.04367 5.10723 5.18755 5.20518 5.30150 5.32841 5.39444 5.48588 5.51811 5.63026 5.67004 5.82207 5.91812 5.98968 6.31574 6.49466 6.89496 7.00935 7.50634 8.97623 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041804 B = 0.010316 C = 0.009732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.639567 B = 2713.658135 C = 2876.343771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.217 3.783 3 H -0.019 1.019 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.269 1.269 12 N -0.532 5.532 13 C 0.043 3.957 14 C 0.075 3.925 15 H 0.065 0.935 16 C -0.177 4.177 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.079 4.079 20 H 0.079 0.921 21 C -0.132 4.132 22 H 0.022 0.978 23 H 0.066 0.934 24 H 0.040 0.960 25 H 0.259 0.741 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.001 0.999 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -0.703 10.799 10.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 H -0.001 1.001 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.255 5.255 13 C -0.106 4.106 14 C -0.034 4.034 15 H 0.083 0.917 16 C -0.215 4.215 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.098 4.098 20 H 0.097 0.903 21 C -0.189 4.189 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.019 0.981 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.082 -1.050 10.693 10.798 hybrid contribution 0.880 0.530 -1.397 1.734 sum -0.201 -0.520 9.296 9.313 Atomic orbital electron populations 1.22031 0.97391 0.98836 0.99806 1.19138 0.92649 0.90808 0.86424 1.00148 1.21687 1.31008 1.12282 0.91493 0.92276 1.25654 0.95519 0.95772 1.01697 1.70057 1.37978 1.24135 1.23751 0.85633 0.78816 0.78276 0.79348 1.20363 1.21144 1.19411 1.62317 1.14776 1.45775 1.02668 1.22234 0.88541 0.98843 1.00945 1.22483 0.97958 0.90957 0.91980 0.91686 1.23454 0.99245 0.96754 1.02078 1.22386 0.96746 0.97412 0.98544 1.22509 0.97341 0.94058 1.01725 1.21733 0.94312 0.95533 0.98216 0.90311 1.21800 0.99543 0.97097 1.00453 0.95897 0.91609 0.94108 0.93200 0.91239 0.92486 0.98060 0.89795 0.93521 0.91807 0.90271 0.89832 0.92439 0.92491 0.93593 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 6.17 71.98 0.44 -5.54 16 2 C 0.22 10.88 1.62 44.17 0.07 10.95 16 3 H -0.02 -1.04 5.94 -2.38 -0.01 -1.06 16 4 C -0.53 -29.10 7.93 25.60 0.20 -28.90 16 5 H 0.06 3.25 5.83 -2.91 -0.02 3.23 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.46 11.48 21.44 0.25 -53.22 16 8 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 N -0.53 -22.49 2.76 -871.94 -2.41 -24.89 16 13 C 0.04 1.71 8.78 127.69 1.12 2.83 16 14 C 0.08 2.66 3.05 45.64 0.14 2.80 16 15 H 0.06 2.13 7.47 -2.39 -0.02 2.12 16 16 C -0.18 -6.43 4.91 31.67 0.16 -6.27 16 17 C -0.11 -3.19 6.86 31.89 0.22 -2.97 16 18 C -0.12 -3.29 5.73 31.67 0.18 -3.11 16 19 C -0.08 -2.39 3.27 -10.07 -0.03 -2.42 16 20 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 21 C -0.13 -4.40 8.00 71.98 0.58 -3.82 16 22 H 0.02 1.13 6.92 -2.38 -0.02 1.11 16 23 H 0.07 2.76 2.20 -2.38 -0.01 2.75 16 24 H 0.04 2.19 6.49 -2.39 -0.02 2.18 16 25 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 26 H 0.07 2.29 7.90 -2.39 -0.02 2.27 16 27 H 0.06 2.42 6.08 -2.38 -0.01 2.40 16 28 H 0.00 0.03 8.12 -2.39 -0.02 0.01 16 29 H 0.08 3.69 3.33 -2.38 -0.01 3.68 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.77 6.13 -2.38 -0.01 1.75 16 35 H 0.06 2.21 3.73 -2.39 -0.01 2.20 16 36 H 0.04 1.62 7.67 -2.39 -0.02 1.60 16 37 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -59.10 261.67 4.44 -54.67 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.04 Total: 12.38 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 3.53 Total: -35.32 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -2.16 Total: -78.11 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -59.10 4.44 -54.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307502887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.715 kcal (2) G-P(sol) polarization free energy of solvation -59.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds