Wall clock time and date at job start Mon Mar 30 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.47033 * 2 1 4 4 C 1.50696 * 109.47296 * 119.99412 * 2 1 3 5 5 H 1.08001 * 119.99988 * 120.00112 * 4 2 1 6 6 C 1.37882 * 120.00055 * 300.00447 * 4 2 1 7 7 N 1.31512 * 119.99836 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00066 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46931 * 89.99757 * 8 6 4 10 10 H 1.48494 * 109.47283 * 210.00076 * 8 6 4 11 11 H 1.48502 * 109.47051 * 330.00374 * 8 6 4 12 12 N 1.46900 * 109.47486 * 239.99706 * 2 1 3 13 13 C 1.46900 * 110.99707 * 303.45719 * 12 2 1 14 14 C 1.46904 * 110.99831 * 67.40589 * 12 2 1 15 15 H 1.09002 * 110.54133 * 302.38705 * 14 12 2 16 16 C 1.54882 * 110.48341 * 179.77103 * 14 12 2 17 17 C 1.54894 * 102.74985 * 203.37858 * 16 14 12 18 18 C 1.54375 * 104.21288 * 37.92784 * 17 16 14 19 19 C 1.53876 * 106.54563 * 336.42230 * 18 17 16 20 20 H 1.09004 * 110.03205 * 119.27074 * 19 18 17 21 21 C 1.52996 * 110.03486 * 240.65263 * 19 18 17 22 22 H 1.09000 * 109.46692 * 181.36118 * 1 2 3 23 23 H 1.08997 * 109.47157 * 301.36188 * 1 2 3 24 24 H 1.09002 * 109.46967 * 61.36452 * 1 2 3 25 25 H 0.97007 * 119.99566 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46763 * 189.52750 * 13 12 2 27 27 H 1.09001 * 109.46933 * 309.52513 * 13 12 2 28 28 H 1.08992 * 109.47112 * 69.52496 * 13 12 2 29 29 H 1.08994 * 110.76002 * 321.69546 * 16 14 12 30 30 H 1.09004 * 110.75444 * 85.06786 * 16 14 12 31 31 H 1.08992 * 110.48993 * 156.61962 * 17 16 14 32 32 H 1.09004 * 110.48704 * 279.14171 * 17 16 14 33 33 H 1.09006 * 110.06892 * 217.15461 * 18 17 16 34 34 H 1.08997 * 110.04977 * 95.68409 * 18 17 16 35 35 H 1.09004 * 109.46914 * 177.90934 * 21 19 18 36 36 H 1.08997 * 109.47338 * 297.90566 * 21 19 18 37 37 H 1.09002 * 109.47224 * 57.91533 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3214 -1.1200 4.0081 9 1 3.6297 -0.5454 4.4124 10 1 1.3431 -0.9489 5.1121 11 1 2.4860 -2.5659 3.7121 12 7 2.0198 -0.6925 -1.1994 13 6 1.4824 -2.0576 -1.2753 14 6 1.6985 0.0680 -2.4145 15 1 0.6235 0.2313 -2.4904 16 6 2.2249 -0.6696 -3.6706 17 6 2.3620 0.4741 -4.7061 18 6 2.8729 1.6741 -3.8802 19 6 2.4510 1.4147 -2.4233 20 1 3.3322 1.3542 -1.7845 21 6 1.5280 2.5341 -1.9376 22 1 -0.3633 -1.0274 0.0244 23 1 -0.3633 0.5348 0.8775 24 1 -0.3633 0.4925 -0.9020 25 1 0.7088 1.1616 3.4844 26 1 1.9876 -2.6031 -2.0724 27 1 1.6477 -2.5664 -0.3256 28 1 0.4135 -2.0162 -1.4841 29 1 3.1933 -1.1286 -3.4716 30 1 1.5057 -1.4146 -4.0108 31 1 3.0846 0.2063 -5.4769 32 1 1.3945 0.7014 -5.1538 33 1 2.4193 2.5971 -4.2415 34 1 3.9587 1.7396 -3.9484 35 1 1.2053 2.3222 -0.9183 36 1 2.0647 3.4825 -1.9591 37 1 0.6564 2.5948 -2.5894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307502894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:32 Heat of formation + Delta-G solvation = -12.002978 kcal Electronic energy + Delta-G solvation = -15186.986599 eV Core-core repulsion = 12963.579097 eV Total energy + Delta-G solvation = -2223.407503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.84264 -35.47272 -32.46632 -30.97119 -28.71960 -27.05517 -25.19038 -25.06460 -23.44129 -20.38036 -19.65882 -18.23383 -16.25085 -15.58480 -14.78083 -14.64886 -13.92617 -13.35480 -12.95919 -12.87489 -12.49347 -12.09674 -11.87989 -11.59455 -11.17155 -11.08679 -10.91746 -10.72385 -10.57944 -10.43415 -10.17163 -10.16470 -10.06457 -9.96686 -9.86301 -9.46110 -8.76976 -8.30531 -7.03118 -5.96292 -3.98699 3.33647 3.39874 3.43396 4.45243 4.96948 5.02547 5.08921 5.35587 5.41993 5.75242 5.83963 5.92930 5.98326 6.01405 6.09113 6.20147 6.25485 6.29240 6.36353 6.50645 6.52969 6.62850 6.71347 6.74056 6.86977 6.90734 6.95288 7.01684 7.23668 7.62711 7.78354 7.91810 8.25125 8.47590 8.71511 9.07654 9.65712 11.10861 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.009200 C = 0.008498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.383724 B = 3042.709023 C = 3294.088693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.205 3.795 3 H 0.050 0.950 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.082 3.918 15 H 0.039 0.961 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.086 4.086 20 H 0.082 0.918 21 C -0.151 4.151 22 H 0.027 0.973 23 H 0.085 0.915 24 H 0.008 0.992 25 H 0.259 0.741 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.011 0.989 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 0.122 -10.514 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.099 3.901 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.253 5.253 13 C -0.113 4.113 14 C -0.027 4.027 15 H 0.056 0.944 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.105 4.105 20 H 0.100 0.900 21 C -0.208 4.208 22 H 0.046 0.954 23 H 0.104 0.896 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.449 0.204 -10.322 10.425 hybrid contribution -0.712 -0.360 0.860 1.173 sum 0.737 -0.156 -9.463 9.493 Atomic orbital electron populations 1.22395 1.01176 0.99382 1.00083 1.19420 0.89533 0.95196 0.85965 0.93224 1.21164 1.30281 1.12379 0.89846 0.92092 1.24917 0.95324 0.95195 0.98903 1.69889 1.37205 1.23141 1.23234 0.86556 0.78480 0.80011 0.82677 1.20766 1.21450 1.20032 1.62462 1.58909 1.01793 1.02109 1.22199 0.95909 0.91750 1.01480 1.22481 0.96566 0.93023 0.90596 0.94360 1.22553 1.01328 0.96862 0.94761 1.22311 1.00324 0.95913 0.97481 1.22210 1.00233 0.97667 0.95428 1.21679 0.99232 0.94176 0.95380 0.89956 1.22061 0.98634 0.97450 1.02681 0.95370 0.89616 0.97347 0.93129 0.93954 0.90835 0.97094 0.90843 0.92637 0.92317 0.92308 0.92365 0.92279 0.90682 0.93575 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 7.93 37.16 0.29 -3.89 16 2 C 0.20 5.12 1.85 -68.87 -0.13 4.99 16 3 H 0.05 1.34 5.16 -51.92 -0.27 1.07 16 4 C -0.50 -13.69 7.81 -34.44 -0.27 -13.96 16 5 H 0.06 1.69 6.99 -52.49 -0.37 1.32 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.50 11.33 55.43 0.63 -24.87 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.53 -11.50 4.55 -226.31 -1.03 -12.53 16 13 C 0.04 0.71 8.22 60.06 0.49 1.20 16 14 C 0.08 1.53 1.90 -66.05 -0.13 1.41 16 15 H 0.04 0.76 6.18 -51.93 -0.32 0.44 16 16 C -0.12 -1.82 5.08 -24.74 -0.13 -1.94 16 17 C -0.12 -1.62 6.83 -25.01 -0.17 -1.79 16 18 C -0.12 -1.66 6.47 -25.55 -0.17 -1.82 16 19 C -0.09 -1.50 2.45 -89.50 -0.22 -1.72 16 20 H 0.08 1.61 7.98 -51.93 -0.41 1.20 16 21 C -0.15 -2.63 8.60 37.16 0.32 -2.31 16 22 H 0.03 0.67 6.65 -51.93 -0.35 0.33 16 23 H 0.09 2.31 6.11 -51.93 -0.32 1.99 16 24 H 0.01 0.17 6.51 -51.93 -0.34 -0.16 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.04 0.74 7.22 -51.93 -0.38 0.37 16 27 H 0.07 1.60 6.46 -51.93 -0.34 1.26 16 28 H 0.01 0.21 6.84 -51.93 -0.36 -0.14 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.54 5.52 -51.93 -0.29 1.25 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 273.74 15.07 4.13 4.13 Total: -1.00 -27.75 273.74 -7.70 -35.45 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.21 Total: -0.34 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -0.19 Total: -18.34 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.40 Total: -37.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.75 -7.70 -35.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307502894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.442 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds