Wall clock time and date at job start Mon Mar 30 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.47033 * 2 1 4 4 C 1.50696 * 109.47296 * 119.99412 * 2 1 3 5 5 H 1.08001 * 119.99988 * 120.00112 * 4 2 1 6 6 C 1.37882 * 120.00055 * 300.00447 * 4 2 1 7 7 N 1.31512 * 119.99836 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00066 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46931 * 89.99757 * 8 6 4 10 10 H 1.48494 * 109.47283 * 210.00076 * 8 6 4 11 11 H 1.48502 * 109.47051 * 330.00374 * 8 6 4 12 12 N 1.46900 * 109.47486 * 239.99706 * 2 1 3 13 13 C 1.46900 * 110.99707 * 303.45719 * 12 2 1 14 14 C 1.46904 * 110.99831 * 67.40589 * 12 2 1 15 15 H 1.09002 * 110.54133 * 302.38705 * 14 12 2 16 16 C 1.54882 * 110.48341 * 179.77103 * 14 12 2 17 17 C 1.54894 * 102.74985 * 203.37858 * 16 14 12 18 18 C 1.54375 * 104.21288 * 37.92784 * 17 16 14 19 19 C 1.53876 * 106.54563 * 336.42230 * 18 17 16 20 20 H 1.09004 * 110.03205 * 119.27074 * 19 18 17 21 21 C 1.52996 * 110.03486 * 240.65263 * 19 18 17 22 22 H 1.09000 * 109.46692 * 181.36118 * 1 2 3 23 23 H 1.08997 * 109.47157 * 301.36188 * 1 2 3 24 24 H 1.09002 * 109.46967 * 61.36452 * 1 2 3 25 25 H 0.97007 * 119.99566 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46763 * 189.52750 * 13 12 2 27 27 H 1.09001 * 109.46933 * 309.52513 * 13 12 2 28 28 H 1.08992 * 109.47112 * 69.52496 * 13 12 2 29 29 H 1.08994 * 110.76002 * 321.69546 * 16 14 12 30 30 H 1.09004 * 110.75444 * 85.06786 * 16 14 12 31 31 H 1.08992 * 110.48993 * 156.61962 * 17 16 14 32 32 H 1.09004 * 110.48704 * 279.14171 * 17 16 14 33 33 H 1.09006 * 110.06892 * 217.15461 * 18 17 16 34 34 H 1.08997 * 110.04977 * 95.68409 * 18 17 16 35 35 H 1.09004 * 109.46914 * 177.90934 * 21 19 18 36 36 H 1.08997 * 109.47338 * 297.90566 * 21 19 18 37 37 H 1.09002 * 109.47224 * 57.91533 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3214 -1.1200 4.0081 9 1 3.6297 -0.5454 4.4124 10 1 1.3431 -0.9489 5.1121 11 1 2.4860 -2.5659 3.7121 12 7 2.0198 -0.6925 -1.1994 13 6 1.4824 -2.0576 -1.2753 14 6 1.6985 0.0680 -2.4145 15 1 0.6235 0.2313 -2.4904 16 6 2.2249 -0.6696 -3.6706 17 6 2.3620 0.4741 -4.7061 18 6 2.8729 1.6741 -3.8802 19 6 2.4510 1.4147 -2.4233 20 1 3.3322 1.3542 -1.7845 21 6 1.5280 2.5341 -1.9376 22 1 -0.3633 -1.0274 0.0244 23 1 -0.3633 0.5348 0.8775 24 1 -0.3633 0.4925 -0.9020 25 1 0.7088 1.1616 3.4844 26 1 1.9876 -2.6031 -2.0724 27 1 1.6477 -2.5664 -0.3256 28 1 0.4135 -2.0162 -1.4841 29 1 3.1933 -1.1286 -3.4716 30 1 1.5057 -1.4146 -4.0108 31 1 3.0846 0.2063 -5.4769 32 1 1.3945 0.7014 -5.1538 33 1 2.4193 2.5971 -4.2415 34 1 3.9587 1.7396 -3.9484 35 1 1.2053 2.3222 -0.9183 36 1 2.0647 3.4825 -1.9591 37 1 0.6564 2.5948 -2.5894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307502894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:31 Heat of formation + Delta-G solvation = -28.257240 kcal Electronic energy + Delta-G solvation = -15187.691437 eV Core-core repulsion = 12963.579097 eV Total energy + Delta-G solvation = -2224.112341 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32840 -37.10338 -34.45289 -32.35606 -30.51024 -28.51182 -27.21431 -26.61341 -24.98214 -22.05538 -20.95746 -19.79753 -18.24738 -17.23598 -16.64953 -15.98911 -15.53736 -14.94712 -14.47868 -14.38577 -14.26491 -13.55229 -13.51401 -13.15374 -13.02774 -12.74015 -12.69068 -12.49293 -12.20050 -12.08538 -11.86114 -11.66791 -11.50058 -11.43374 -11.24137 -11.02961 -10.80077 -10.41453 -8.77073 -8.08316 -6.17760 1.41650 1.42284 1.52352 2.43836 3.20631 3.45289 3.77249 3.85327 4.12301 4.49676 4.52452 4.56796 4.66207 4.67177 4.72787 4.79088 4.81631 4.89172 4.93999 5.01693 5.10351 5.14110 5.19558 5.27088 5.29813 5.34265 5.41868 5.49901 5.60489 5.62917 5.82173 5.85960 6.28620 6.56750 6.88060 6.97308 7.50851 8.97583 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.009200 C = 0.008498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.383724 B = 3042.709023 C = 3294.088693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.212 3.788 3 H 0.026 0.974 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.540 5.540 13 C 0.040 3.960 14 C 0.076 3.924 15 H 0.027 0.973 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.088 4.088 20 H 0.053 0.947 21 C -0.145 4.145 22 H 0.024 0.976 23 H 0.058 0.942 24 H 0.022 0.978 25 H 0.260 0.740 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.011 0.989 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -0.277 -12.167 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.105 3.895 3 H 0.044 0.956 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.263 5.263 13 C -0.108 4.108 14 C -0.032 4.032 15 H 0.045 0.955 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.107 4.107 20 H 0.071 0.929 21 C -0.203 4.203 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.916 -0.202 -11.993 12.146 hybrid contribution -0.857 -0.219 1.353 1.616 sum 1.059 -0.421 -10.640 10.701 Atomic orbital electron populations 1.22174 1.01022 0.98708 0.99440 1.19154 0.89431 0.94031 0.86915 0.95594 1.21451 1.30326 1.12329 0.91275 0.92891 1.25660 0.95534 0.95893 1.01686 1.70017 1.37989 1.24206 1.23791 0.85592 0.77959 0.79072 0.79201 1.20364 1.21002 1.19475 1.62398 1.59079 1.02538 1.02324 1.22165 0.96239 0.91054 1.01361 1.22631 0.96181 0.93906 0.90524 0.95491 1.22525 1.01073 0.97734 0.93651 1.22299 1.01687 0.94085 0.97089 1.22170 1.01005 0.98966 0.92768 1.21678 0.97840 0.93687 0.97467 0.92867 1.21984 0.99422 0.98314 1.00538 0.95699 0.92340 0.95884 0.93130 0.91045 0.92981 0.97066 0.91315 0.91512 0.89881 0.91137 0.90755 0.91370 0.94592 0.92034 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.71 7.93 71.98 0.57 -7.14 16 2 C 0.21 10.85 1.85 44.17 0.08 10.93 16 3 H 0.03 1.47 5.16 -2.38 -0.01 1.45 16 4 C -0.52 -28.93 7.81 25.60 0.20 -28.73 16 5 H 0.05 2.99 6.99 -2.91 -0.02 2.97 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.59 11.33 21.45 0.24 -53.35 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.54 -23.51 4.55 -869.91 -3.96 -27.47 16 13 C 0.04 1.60 8.22 127.69 1.05 2.65 16 14 C 0.08 2.76 1.90 45.99 0.09 2.85 16 15 H 0.03 1.05 6.18 -2.39 -0.01 1.03 16 16 C -0.11 -3.17 5.08 31.88 0.16 -3.01 16 17 C -0.11 -2.57 6.83 31.71 0.22 -2.36 16 18 C -0.11 -2.81 6.47 31.36 0.20 -2.61 16 19 C -0.09 -3.00 2.45 -10.07 -0.02 -3.02 16 20 H 0.05 2.11 7.98 -2.39 -0.02 2.09 16 21 C -0.15 -5.02 8.60 71.98 0.62 -4.40 16 22 H 0.02 1.20 6.65 -2.39 -0.02 1.19 16 23 H 0.06 3.24 6.11 -2.39 -0.01 3.23 16 24 H 0.02 1.03 6.51 -2.39 -0.02 1.02 16 25 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 26 H 0.07 2.39 7.22 -2.39 -0.02 2.37 16 27 H 0.05 2.27 6.46 -2.39 -0.02 2.25 16 28 H 0.01 0.43 6.84 -2.39 -0.02 0.41 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.66 7.67 -2.38 -0.02 1.64 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.51 5.52 -2.38 -0.01 1.50 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -60.09 273.74 2.95 -57.14 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.02 Total: 10.87 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 3.62 Total: -33.80 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -3.71 Total: -80.82 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -60.09 2.95 -57.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307502894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.880 kcal (2) G-P(sol) polarization free energy of solvation -60.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds