Wall clock time and date at job start Mon Mar 30 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47076 * 2 1 4 4 N 1.46503 * 109.47316 * 119.99779 * 2 1 3 5 5 C 1.36931 * 119.99870 * 124.71180 * 4 2 1 6 6 H 1.08001 * 119.99811 * 208.41157 * 5 4 2 7 7 C 1.38807 * 120.00249 * 28.13455 * 5 4 2 8 8 N 1.31624 * 119.99681 * 19.03106 * 7 5 4 9 9 Si 1.86803 * 120.00385 * 199.03139 * 7 5 4 10 10 H 1.48503 * 109.47039 * 89.99847 * 9 7 5 11 11 H 1.48498 * 109.47360 * 210.00195 * 9 7 5 12 12 H 1.48501 * 109.46813 * 330.00363 * 9 7 5 13 13 C 1.46502 * 119.99911 * 304.71768 * 4 2 1 14 14 H 1.08998 * 110.01894 * 358.59822 * 13 4 2 15 15 C 1.54267 * 110.02913 * 237.16387 * 13 4 2 16 16 C 1.54886 * 104.19504 * 217.10407 * 15 13 4 17 17 C 1.54890 * 102.75113 * 37.94227 * 16 15 13 18 18 H 1.09008 * 110.59999 * 80.78847 * 17 16 15 19 19 C 1.52995 * 110.48945 * 203.38117 * 17 16 15 20 20 C 1.53868 * 110.03545 * 119.99850 * 13 4 2 21 21 H 1.09004 * 109.47130 * 299.99878 * 1 2 3 22 22 H 1.09004 * 109.47364 * 59.99889 * 1 2 3 23 23 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47644 * 240.00330 * 2 1 3 25 25 H 1.08995 * 109.47032 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.46926 * 300.00368 * 3 2 1 27 27 H 1.09004 * 109.47042 * 60.00068 * 3 2 1 28 28 H 0.96995 * 119.99701 * 179.97438 * 8 7 5 29 29 H 1.09003 * 110.48913 * 335.78120 * 15 13 4 30 30 H 1.09002 * 110.48940 * 98.42672 * 15 13 4 31 31 H 1.09003 * 110.75762 * 279.62799 * 16 15 13 32 32 H 1.09005 * 110.91459 * 156.32959 * 16 15 13 33 33 H 1.09000 * 109.47178 * 174.77300 * 19 17 16 34 34 H 1.09007 * 109.46817 * 294.77075 * 19 17 16 35 35 H 1.08998 * 109.47504 * 54.77168 * 19 17 16 36 36 H 1.08998 * 110.03308 * 238.56688 * 20 13 4 37 37 H 1.09007 * 110.03173 * 359.94591 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8833 -1.7450 1.0729 6 1 2.8961 -2.5232 1.8215 7 6 3.7395 -1.8165 -0.0173 8 7 4.0008 -0.7352 -0.7209 9 14 4.5208 -3.4472 -0.4860 10 1 3.6402 -4.1603 -1.4459 11 1 5.8425 -3.1999 -1.1163 12 1 4.7008 -4.2779 0.7317 13 6 1.5813 -0.2531 2.5243 14 1 0.9189 0.6079 2.4343 15 6 2.8053 0.1089 3.3907 16 6 2.4234 -0.3788 4.8103 17 6 1.6653 -1.6992 4.5257 18 1 2.3674 -2.5149 4.3529 19 6 0.7270 -2.0386 5.6855 20 6 0.8565 -1.4027 3.2460 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8899 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 4.5994 -0.7851 -1.4825 29 1 3.6931 -0.4132 3.0339 30 1 2.9688 1.1866 3.3887 31 1 1.7717 0.3420 5.3041 32 1 3.3141 -0.5663 5.4100 33 1 0.1353 -2.9174 5.4289 34 1 1.3149 -2.2449 6.5800 35 1 0.0624 -1.1955 5.8740 36 1 -0.1574 -1.0994 3.5069 37 1 0.8291 -2.2859 2.6076 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307576769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:25 Heat of formation + Delta-G solvation = -2.866690 kcal Electronic energy + Delta-G solvation = -15264.801443 eV Core-core repulsion = 13041.790119 eV Total energy + Delta-G solvation = -2223.011324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.16880 -35.38130 -31.74329 -30.87056 -28.98252 -27.05947 -25.89372 -24.50086 -23.04518 -19.90936 -19.48037 -18.63946 -16.14812 -15.34456 -14.43684 -14.24134 -13.52069 -13.37388 -12.93794 -12.55105 -12.42646 -12.16348 -11.65816 -11.44408 -11.23267 -10.90007 -10.77380 -10.71598 -10.46207 -10.14189 -10.09199 -10.04777 -9.89654 -9.83468 -9.71663 -9.41759 -9.11985 -8.29659 -6.52669 -5.70618 -3.11519 3.41800 3.49567 3.50021 4.56125 5.26002 5.34152 5.39538 5.47311 5.61898 5.87296 6.01349 6.14163 6.19445 6.19772 6.32446 6.42742 6.44492 6.50996 6.58496 6.61039 6.63922 6.75285 6.80251 6.84823 6.90177 6.98181 7.07237 7.17589 7.31180 7.40876 7.76537 7.84075 7.97857 8.59246 9.34654 9.99536 10.52591 11.36441 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025032 B = 0.012947 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.316527 B = 2162.073715 C = 2742.878189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.181 3.819 3 C -0.143 4.143 4 N -0.579 5.579 5 C -0.241 4.241 6 H 0.065 0.935 7 C 0.002 3.998 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.290 1.290 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.173 3.827 14 H 0.050 0.950 15 C -0.131 4.131 16 C -0.118 4.118 17 C -0.095 4.095 18 H 0.069 0.931 19 C -0.140 4.140 20 C -0.129 4.129 21 H 0.036 0.964 22 H 0.037 0.963 23 H 0.044 0.956 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.251 0.749 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 0.879 6.788 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.075 3.925 3 C -0.202 4.202 4 N -0.299 5.299 5 C -0.371 4.371 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.206 1.206 13 C 0.065 3.935 14 H 0.068 0.932 15 C -0.171 4.171 16 C -0.156 4.156 17 C -0.113 4.113 18 H 0.088 0.912 19 C -0.198 4.198 20 C -0.168 4.168 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.058 0.896 6.621 8.380 hybrid contribution 0.470 -0.783 -0.296 0.960 sum -4.588 0.113 6.325 7.814 Atomic orbital electron populations 1.22401 1.00469 1.00120 0.99159 1.20246 0.88155 0.91977 0.92154 1.22145 1.03472 0.97626 0.96986 1.44142 1.51336 1.35773 0.98629 1.19036 1.12161 0.98064 1.07839 0.91743 1.24974 0.97349 0.96495 1.00778 1.70042 1.37595 1.25548 1.20888 0.86412 0.78325 0.84372 0.78416 1.21698 1.22014 1.20601 1.20876 0.93117 0.93400 0.86139 0.93201 1.22805 1.01596 0.99221 0.93455 1.22497 0.98739 0.96560 0.97818 1.21893 0.97050 0.97614 0.94766 0.91236 1.21809 0.99176 1.00760 0.98032 1.22707 0.97210 1.01158 0.95774 0.94456 0.94408 0.93705 0.88759 0.90671 0.95706 0.96140 0.93919 0.89982 0.93721 0.92792 0.92997 0.93304 0.93563 0.93209 0.93782 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.11 37.16 0.34 -2.90 16 2 C 0.18 4.24 2.33 -67.93 -0.16 4.08 16 3 C -0.14 -3.20 9.05 37.16 0.34 -2.87 16 4 N -0.58 -13.91 2.32 -156.89 -0.36 -14.27 16 5 C -0.24 -6.36 7.67 -15.06 -0.12 -6.48 16 6 H 0.06 1.71 7.34 -52.49 -0.39 1.33 16 7 C 0.00 0.06 4.83 -17.43 -0.08 -0.02 16 8 N -0.90 -25.11 10.13 55.49 0.56 -24.55 16 9 Si 0.89 21.62 29.59 -169.99 -5.03 16.59 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.17 3.58 2.51 -66.81 -0.17 3.41 16 14 H 0.05 1.02 6.13 -51.93 -0.32 0.70 16 15 C -0.13 -2.63 6.41 -25.07 -0.16 -2.79 16 16 C -0.12 -1.96 6.33 -24.74 -0.16 -2.11 16 17 C -0.09 -1.58 3.46 -88.96 -0.31 -1.89 16 18 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 19 C -0.14 -1.92 9.12 37.15 0.34 -1.58 16 20 C -0.13 -2.41 5.70 -25.62 -0.15 -2.55 16 21 H 0.04 0.70 6.84 -51.93 -0.36 0.34 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.09 2.52 5.93 -51.93 -0.31 2.21 16 25 H 0.07 1.90 7.14 -51.93 -0.37 1.53 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.42 7.31 -51.93 -0.38 0.04 16 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.08 1.90 7.01 -51.93 -0.36 1.54 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.82 8.04 -51.93 -0.42 0.40 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.04 0.75 7.84 -51.93 -0.41 0.34 16 37 H 0.07 1.46 7.16 -51.93 -0.37 1.09 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -26.83 282.18 -7.48 -34.30 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.62 Total: -0.64 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.28 Total: -15.69 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.20 Total: -38.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.83 -7.48 -34.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307576769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.438 kcal (2) G-P(sol) polarization free energy of solvation -26.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds