Wall clock time and date at job start Mon Mar 30 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47076 * 2 1 4 4 N 1.46503 * 109.47316 * 119.99779 * 2 1 3 5 5 C 1.36931 * 119.99870 * 124.71180 * 4 2 1 6 6 H 1.08001 * 119.99811 * 208.41157 * 5 4 2 7 7 C 1.38807 * 120.00249 * 28.13455 * 5 4 2 8 8 N 1.31624 * 119.99681 * 19.03106 * 7 5 4 9 9 Si 1.86803 * 120.00385 * 199.03139 * 7 5 4 10 10 H 1.48503 * 109.47039 * 89.99847 * 9 7 5 11 11 H 1.48498 * 109.47360 * 210.00195 * 9 7 5 12 12 H 1.48501 * 109.46813 * 330.00363 * 9 7 5 13 13 C 1.46502 * 119.99911 * 304.71768 * 4 2 1 14 14 H 1.08998 * 110.01894 * 358.59822 * 13 4 2 15 15 C 1.54267 * 110.02913 * 237.16387 * 13 4 2 16 16 C 1.54886 * 104.19504 * 217.10407 * 15 13 4 17 17 C 1.54890 * 102.75113 * 37.94227 * 16 15 13 18 18 H 1.09008 * 110.59999 * 80.78847 * 17 16 15 19 19 C 1.52995 * 110.48945 * 203.38117 * 17 16 15 20 20 C 1.53868 * 110.03545 * 119.99850 * 13 4 2 21 21 H 1.09004 * 109.47130 * 299.99878 * 1 2 3 22 22 H 1.09004 * 109.47364 * 59.99889 * 1 2 3 23 23 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47644 * 240.00330 * 2 1 3 25 25 H 1.08995 * 109.47032 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.46926 * 300.00368 * 3 2 1 27 27 H 1.09004 * 109.47042 * 60.00068 * 3 2 1 28 28 H 0.96995 * 119.99701 * 179.97438 * 8 7 5 29 29 H 1.09003 * 110.48913 * 335.78120 * 15 13 4 30 30 H 1.09002 * 110.48940 * 98.42672 * 15 13 4 31 31 H 1.09003 * 110.75762 * 279.62799 * 16 15 13 32 32 H 1.09005 * 110.91459 * 156.32959 * 16 15 13 33 33 H 1.09000 * 109.47178 * 174.77300 * 19 17 16 34 34 H 1.09007 * 109.46817 * 294.77075 * 19 17 16 35 35 H 1.08998 * 109.47504 * 54.77168 * 19 17 16 36 36 H 1.08998 * 110.03308 * 238.56688 * 20 13 4 37 37 H 1.09007 * 110.03173 * 359.94591 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8833 -1.7450 1.0729 6 1 2.8961 -2.5232 1.8215 7 6 3.7395 -1.8165 -0.0173 8 7 4.0008 -0.7352 -0.7209 9 14 4.5208 -3.4472 -0.4860 10 1 3.6402 -4.1603 -1.4459 11 1 5.8425 -3.1999 -1.1163 12 1 4.7008 -4.2779 0.7317 13 6 1.5813 -0.2531 2.5243 14 1 0.9189 0.6079 2.4343 15 6 2.8053 0.1089 3.3907 16 6 2.4234 -0.3788 4.8103 17 6 1.6653 -1.6992 4.5257 18 1 2.3674 -2.5149 4.3529 19 6 0.7270 -2.0386 5.6855 20 6 0.8565 -1.4027 3.2460 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8899 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 4.5994 -0.7851 -1.4825 29 1 3.6931 -0.4132 3.0339 30 1 2.9688 1.1866 3.3887 31 1 1.7717 0.3420 5.3041 32 1 3.3141 -0.5663 5.4100 33 1 0.1353 -2.9174 5.4289 34 1 1.3149 -2.2449 6.5800 35 1 0.0624 -1.1955 5.8740 36 1 -0.1574 -1.0994 3.5069 37 1 0.8291 -2.2859 2.6076 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307576769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:25 Heat of formation + Delta-G solvation = -15.940179 kcal Electronic energy + Delta-G solvation = -15265.368352 eV Core-core repulsion = 13041.790119 eV Total energy + Delta-G solvation = -2223.578233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.77305 -37.06820 -33.72816 -32.42203 -30.59154 -28.69276 -27.61093 -26.11472 -24.76117 -21.61207 -21.03001 -20.30397 -18.00721 -17.05240 -16.27292 -15.97513 -15.19566 -14.96614 -14.30141 -14.28829 -14.02120 -13.61507 -13.40077 -12.91558 -12.84056 -12.71584 -12.64479 -12.45253 -12.10784 -11.98141 -11.67260 -11.57666 -11.50476 -11.38605 -11.26910 -11.18017 -10.88434 -10.31226 -8.46966 -7.75610 -5.17112 1.46033 1.48857 1.55283 2.56800 3.36055 3.66930 3.94699 3.98860 4.20147 4.49346 4.65667 4.70313 4.76204 4.80750 4.84718 4.89306 4.92235 4.99330 5.02339 5.11233 5.14773 5.18169 5.24715 5.30611 5.33340 5.40037 5.47407 5.60943 5.72528 5.75078 5.82119 5.86400 6.08005 6.56140 7.31628 8.07502 8.52736 9.28688 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025032 B = 0.012947 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.316527 B = 2162.073715 C = 2742.878189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.175 3.825 3 C -0.130 4.130 4 N -0.591 5.591 5 C -0.236 4.236 6 H 0.057 0.943 7 C -0.047 4.047 8 N -0.920 5.920 9 Si 0.947 3.053 10 H -0.291 1.291 11 H -0.299 1.299 12 H -0.275 1.275 13 C 0.166 3.834 14 H 0.058 0.942 15 C -0.130 4.130 16 C -0.107 4.107 17 C -0.093 4.093 18 H 0.049 0.951 19 C -0.133 4.133 20 C -0.122 4.122 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.244 0.756 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 1.070 8.455 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 C -0.189 4.189 4 N -0.312 5.312 5 C -0.367 4.367 6 H 0.075 0.925 7 C -0.243 4.243 8 N -0.566 5.566 9 Si 0.778 3.222 10 H -0.218 1.218 11 H -0.226 1.226 12 H -0.200 1.200 13 C 0.059 3.941 14 H 0.076 0.924 15 C -0.170 4.170 16 C -0.144 4.144 17 C -0.112 4.112 18 H 0.067 0.933 19 C -0.190 4.190 20 C -0.161 4.161 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.584 1.082 8.313 10.660 hybrid contribution 0.922 -0.809 -0.795 1.462 sum -5.662 0.273 7.518 9.416 Atomic orbital electron populations 1.22205 0.97403 1.00302 1.00837 1.20228 0.90451 0.91830 0.90627 1.21959 1.01049 0.97482 0.98420 1.44318 1.51107 1.35570 1.00195 1.19145 1.11770 0.98506 1.07246 0.92503 1.25545 0.98530 0.98799 1.01393 1.70184 1.38476 1.26759 1.21172 0.85559 0.77122 0.81560 0.77976 1.21831 1.22634 1.20023 1.21101 0.93608 0.94510 0.84882 0.92376 1.22702 0.99581 0.98877 0.95811 1.22449 0.99626 0.96741 0.95626 1.21863 0.97101 0.97078 0.95178 0.93262 1.21737 0.98802 1.01507 0.96976 1.22591 0.98442 0.99042 0.96028 0.92985 0.92414 0.94283 0.92513 0.94224 0.94002 0.94754 0.94698 0.93974 0.93569 0.90303 0.91979 0.92880 0.92052 0.91813 0.91565 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 9.11 71.98 0.66 -5.00 16 2 C 0.18 8.19 2.33 44.99 0.10 8.29 16 3 C -0.13 -5.76 9.05 71.98 0.65 -5.11 16 4 N -0.59 -28.57 2.32 -650.27 -1.51 -30.08 16 5 C -0.24 -12.69 7.67 84.03 0.64 -12.05 16 6 H 0.06 3.09 7.34 -2.91 -0.02 3.07 16 7 C -0.05 -2.61 4.83 84.86 0.41 -2.20 16 8 N -0.92 -53.18 10.13 21.65 0.22 -52.97 16 9 Si 0.95 45.52 29.59 68.60 2.03 47.55 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.17 6.70 2.51 45.71 0.11 6.81 16 14 H 0.06 2.24 6.13 -2.39 -0.01 2.22 16 15 C -0.13 -5.12 6.41 31.67 0.20 -4.91 16 16 C -0.11 -3.26 6.33 31.88 0.20 -3.05 16 17 C -0.09 -2.92 3.46 -9.72 -0.03 -2.95 16 18 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 19 C -0.13 -3.15 9.12 71.98 0.66 -2.49 16 20 C -0.12 -4.33 5.70 31.32 0.18 -4.15 16 21 H 0.05 1.81 6.84 -2.38 -0.02 1.79 16 22 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.06 3.10 5.93 -2.39 -0.01 3.08 16 25 H 0.04 2.02 7.14 -2.39 -0.02 2.00 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.03 1.38 7.31 -2.38 -0.02 1.36 16 28 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.04 1.98 7.01 -2.39 -0.02 1.96 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 32 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 36 H 0.07 2.05 7.84 -2.39 -0.02 2.03 16 37 H 0.04 1.80 7.16 -2.38 -0.02 1.78 16 Total: -1.00 -58.49 282.18 5.53 -52.96 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.00 Total: 9.36 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 3.79 Total: -26.82 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -1.29 Total: -83.05 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -58.49 5.53 -52.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307576769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.015 kcal (2) G-P(sol) polarization free energy of solvation -58.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds