Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46724 * 2 1 4 4 N 1.46496 * 109.47631 * 120.00376 * 2 1 3 5 5 C 1.36934 * 119.99885 * 275.00584 * 4 2 1 6 6 H 1.07997 * 120.00494 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00061 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00172 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47232 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47372 * 119.99888 * 9 7 5 12 12 H 1.48502 * 109.47509 * 239.99790 * 9 7 5 13 13 C 1.53002 * 109.47233 * 240.00652 * 2 1 3 14 14 H 1.09000 * 109.46986 * 299.99797 * 13 2 1 15 15 C 1.52997 * 109.47415 * 179.97438 * 13 2 1 16 16 C 1.53002 * 109.47092 * 179.97438 * 15 13 2 17 17 C 1.52996 * 109.46969 * 60.00060 * 16 15 13 18 18 C 1.52992 * 109.47224 * 299.99553 * 17 16 15 19 19 H 1.09002 * 109.47103 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47482 * 300.00294 * 18 17 16 21 21 C 1.52999 * 109.46961 * 60.00654 * 18 17 16 22 22 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47098 * 299.99177 * 1 2 3 24 24 H 1.09002 * 109.47131 * 60.00002 * 1 2 3 25 25 H 0.97000 * 120.00167 * 94.99720 * 4 2 1 26 26 H 0.97000 * 119.99607 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47045 * 59.99931 * 15 13 2 28 28 H 1.09000 * 109.47140 * 300.00024 * 15 13 2 29 29 H 1.09004 * 109.47059 * 299.99666 * 16 15 13 30 30 H 1.09004 * 109.46930 * 180.02562 * 16 15 13 31 31 H 1.09001 * 109.46997 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.47134 * 60.00388 * 17 16 15 33 33 H 1.09002 * 109.47153 * 59.99783 * 20 18 17 34 34 H 1.09001 * 109.46832 * 299.99974 * 20 18 17 35 35 H 1.09004 * 109.47261 * 179.97438 * 20 18 17 36 36 H 1.09000 * 109.47486 * 59.99547 * 21 18 17 37 37 H 1.09001 * 109.47362 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1492 -0.0076 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6115 -0.6621 3.5091 8 7 2.9237 -1.9394 3.4502 9 14 2.7905 0.2697 5.1181 10 1 2.3764 1.6822 4.9208 11 1 1.9294 -0.3581 6.1523 12 1 4.2074 0.2260 5.5606 13 6 2.0400 -0.7211 -1.2493 14 1 1.6767 -1.7488 -1.2494 15 6 3.5700 -0.7206 -1.2497 16 6 4.0800 -1.4423 -2.4987 17 6 3.5694 -0.7218 -3.7481 18 6 2.0395 -0.7224 -3.7478 19 1 1.6758 -0.2095 -4.6382 20 6 1.5300 -2.1650 -3.7470 21 6 1.5295 -0.0006 -2.4989 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.2491 -1.6318 1.1524 26 1 3.2464 -2.3969 4.2423 27 1 3.9337 -1.2343 -0.3598 28 1 3.9330 0.3072 -1.2498 29 1 3.7170 -2.4701 -2.4981 30 1 5.1700 -1.4423 -2.4987 31 1 3.9331 -1.2356 -4.6380 32 1 3.9324 0.3059 -3.7487 33 1 1.8937 -2.6783 -2.8569 34 1 1.8933 -2.6791 -4.6369 35 1 0.4399 -2.1654 -3.7464 36 1 1.8925 1.0271 -2.4994 37 1 0.4395 -0.0014 -2.4984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307583386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = -25.320715 kcal Electronic energy + Delta-G solvation = -14839.887268 eV Core-core repulsion = 12615.902265 eV Total energy + Delta-G solvation = -2223.985003 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12332 -35.32536 -32.33534 -31.37578 -29.61875 -27.76475 -26.48794 -24.09431 -22.28113 -21.61258 -19.56527 -18.37723 -17.06772 -15.38870 -14.83690 -14.31608 -13.83558 -13.64011 -13.26943 -13.07589 -12.86551 -12.32156 -12.09736 -11.97302 -11.42625 -11.24984 -10.90829 -10.81970 -10.77506 -10.70653 -10.60998 -10.37609 -10.05726 -9.77277 -9.67109 -9.42117 -9.30850 -8.81652 -6.85837 -5.70016 -2.97011 3.46492 3.52287 3.54300 4.64399 4.96254 4.98506 5.03635 5.46654 5.53307 5.61305 5.63763 5.66610 5.79227 5.84222 5.90587 6.01507 6.07623 6.10510 6.14951 6.25661 6.27276 6.34808 6.45710 6.53342 6.55282 6.61888 6.69266 6.74523 6.86351 7.02439 7.11676 7.26232 7.77185 8.49415 9.60240 10.20760 10.55514 11.53000 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047513 B = 0.007671 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.165238 B = 3649.226853 C = 3888.208561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.043 0.957 4 N -0.723 5.723 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.017 4.017 8 N -0.934 5.934 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.089 4.089 14 H 0.067 0.933 15 C -0.107 4.107 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.090 4.090 19 H 0.060 0.940 20 C -0.150 4.150 21 C -0.108 4.108 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.383 0.617 26 H 0.253 0.747 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 1.746 -14.155 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.061 0.939 4 N -0.364 5.364 5 C -0.362 4.362 6 H 0.087 0.913 7 C -0.212 4.212 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.108 4.108 14 H 0.085 0.915 15 C -0.145 4.145 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.108 4.108 19 H 0.079 0.921 20 C -0.207 4.207 21 C -0.146 4.146 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.216 0.784 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.127 1.881 -14.008 14.179 hybrid contribution 0.129 0.153 0.991 1.011 sum -0.998 2.034 -13.018 13.214 Atomic orbital electron populations 1.22487 0.99764 1.00616 0.99659 1.20252 0.91415 0.95314 0.86412 0.93932 1.42428 1.78010 1.10647 1.05315 1.19294 1.35722 0.93792 0.87433 0.91325 1.24708 1.02615 0.95976 0.97937 1.69674 1.51479 1.08606 1.28583 0.86162 0.77236 0.78791 0.84315 1.20671 1.22023 1.21999 1.21398 0.95426 0.99776 0.94213 0.91496 1.21479 0.95279 1.00350 0.97368 1.21603 0.99547 0.99671 0.95051 1.21549 0.95277 1.00395 0.97738 1.21078 0.95458 0.96350 0.97964 0.92112 1.21937 1.00549 0.96478 1.01770 1.21646 1.00151 0.98874 0.93894 0.93726 0.93227 0.94358 0.78369 0.93729 0.90641 0.92777 0.92063 0.92784 0.92896 0.92398 0.91626 0.93472 0.93096 0.92398 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.14 37.16 0.34 -2.75 16 2 C 0.18 3.56 2.47 -67.93 -0.17 3.39 16 3 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -18.22 4.43 -53.43 -0.24 -18.46 16 5 C -0.23 -6.48 9.93 -15.06 -0.15 -6.63 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 8 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 9 Si 0.90 22.74 29.55 -169.99 -5.02 17.71 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 C -0.09 -1.49 1.55 -90.62 -0.14 -1.63 16 14 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 15 C -0.11 -1.82 5.05 -26.73 -0.13 -1.95 16 16 C -0.12 -1.69 5.65 -26.73 -0.15 -1.84 16 17 C -0.11 -1.37 5.45 -26.74 -0.15 -1.51 16 18 C -0.09 -1.10 3.19 -90.63 -0.29 -1.38 16 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.15 -1.78 8.50 37.16 0.32 -1.47 16 21 C -0.11 -1.50 4.38 -26.73 -0.12 -1.62 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.60 6.43 -51.93 -0.33 0.27 16 25 H 0.38 10.27 7.58 -40.82 -0.31 9.96 16 26 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.07 1.52 7.45 -51.93 -0.39 1.13 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 LS Contribution 280.36 15.07 4.22 4.22 Total: -1.00 -29.24 280.36 -7.52 -36.76 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.47 Total: 5.51 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.74 Total: -17.99 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.49 Total: -46.22 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.24 -7.52 -36.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307583386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.441 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds