Wall clock time and date at job start Mon Mar 30 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47115 * 2 1 4 4 C 1.52998 * 109.46901 * 120.00114 * 2 1 3 5 5 C 1.53005 * 109.47131 * 175.00191 * 4 2 1 6 6 H 1.08998 * 109.47192 * 54.99451 * 5 4 2 7 7 C 1.53000 * 109.47337 * 175.00068 * 5 4 2 8 8 N 1.46497 * 109.46660 * 294.99685 * 5 4 2 9 9 C 1.36941 * 120.00126 * 122.93872 * 8 5 4 10 10 H 1.07998 * 120.00434 * 213.61374 * 9 8 5 11 11 C 1.38815 * 119.99725 * 33.61103 * 9 8 5 12 12 N 1.31620 * 119.99878 * 15.34609 * 11 9 8 13 13 Si 1.86803 * 120.00065 * 195.34501 * 11 9 8 14 14 H 1.48497 * 109.46949 * 90.00057 * 13 11 9 15 15 H 1.48491 * 109.47142 * 210.00051 * 13 11 9 16 16 H 1.48500 * 109.46832 * 330.00174 * 13 11 9 17 17 C 1.46497 * 120.00284 * 302.93547 * 8 5 4 18 18 C 1.53011 * 117.49884 * 193.37862 * 17 8 5 19 19 C 1.53002 * 117.50202 * 124.71908 * 17 8 5 20 20 H 1.08998 * 109.46733 * 300.00216 * 1 2 3 21 21 H 1.08999 * 109.46843 * 60.00083 * 1 2 3 22 22 H 1.08998 * 109.46934 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47160 * 239.99510 * 2 1 3 24 24 H 1.09005 * 109.46890 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47197 * 299.99700 * 3 2 1 26 26 H 1.08998 * 109.47496 * 60.00252 * 3 2 1 27 27 H 1.09007 * 109.47271 * 294.99776 * 4 2 1 28 28 H 1.08995 * 109.47466 * 55.00193 * 4 2 1 29 29 H 1.08997 * 109.47129 * 59.99152 * 7 5 4 30 30 H 1.08996 * 109.47508 * 179.97438 * 7 5 4 31 31 H 1.09006 * 109.47015 * 299.99932 * 7 5 4 32 32 H 0.97007 * 119.99928 * 184.98733 * 12 11 9 33 33 H 1.09003 * 115.55338 * 339.04726 * 17 8 5 34 34 H 1.08997 * 117.49736 * 0.02562 * 18 17 8 35 35 H 1.09002 * 117.49806 * 145.02250 * 18 17 8 36 36 H 1.08996 * 117.50363 * 214.98047 * 19 17 8 37 37 H 1.09007 * 117.49570 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1880 6 1 3.9954 0.1611 1.0527 7 6 4.0852 -1.4395 2.4919 8 7 3.9479 -1.6872 0.0627 9 6 4.7825 -1.2061 -0.9106 10 1 4.6631 -1.5312 -1.9336 11 6 5.7820 -0.3005 -0.5824 12 7 6.1297 -0.1316 0.6757 13 14 6.6337 0.6783 -1.9263 14 1 5.9002 1.9494 -2.1532 15 1 8.0278 0.9784 -1.5124 16 1 6.6498 -0.1148 -3.1817 17 6 3.4383 -3.0581 -0.0215 18 6 4.1049 -3.9992 -1.0270 19 6 2.6984 -3.4596 -1.2991 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 1.7516 -0.1583 2.1370 28 1 1.6054 -1.7198 1.2951 29 1 3.6545 -2.4316 2.6271 30 1 5.1714 -1.5181 2.4481 31 1 3.8001 -0.8025 3.3292 32 1 6.7760 0.5519 0.9128 33 1 3.0912 -3.4892 0.9176 34 1 4.9229 -3.5984 -1.6256 35 1 4.1960 -5.0494 -0.7496 36 1 1.8649 -4.1550 -1.2007 37 1 2.5906 -2.7036 -2.0769 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308162071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:13 Heat of formation + Delta-G solvation = 24.518291 kcal Electronic energy + Delta-G solvation = -15342.655944 eV Core-core repulsion = 13120.832122 eV Total energy + Delta-G solvation = -2221.823822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.75075 -35.50803 -33.32429 -31.33760 -28.66735 -26.56124 -25.55376 -24.05246 -21.33729 -20.99006 -19.69113 -18.66528 -16.16831 -15.36483 -14.69374 -14.14098 -13.80378 -13.41077 -13.05664 -12.69995 -12.02335 -11.75402 -11.67955 -11.57964 -11.20718 -10.90533 -10.79958 -10.72973 -10.56524 -10.44836 -10.29176 -10.04229 -9.78783 -9.66570 -9.33986 -9.16395 -9.05404 -8.32867 -6.46679 -5.74926 -3.27734 3.37282 3.45360 3.45996 4.48521 5.01838 5.28118 5.44062 5.60130 5.65704 5.73846 5.95702 6.12440 6.17926 6.21498 6.32397 6.35727 6.39531 6.49445 6.54012 6.59431 6.66341 6.67963 6.72666 6.86773 6.91587 7.04835 7.09517 7.14059 7.21805 7.29392 7.72770 7.75789 7.90710 8.52950 9.26961 9.88137 10.43117 11.27102 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.014595 C = 0.012084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.067835 B = 1917.965944 C = 2316.532333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.126 4.126 5 C 0.189 3.811 6 H 0.098 0.902 7 C -0.149 4.149 8 N -0.545 5.545 9 C -0.250 4.250 10 H 0.063 0.937 11 C 0.012 3.988 12 N -0.891 5.891 13 Si 0.893 3.107 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.135 3.865 18 C -0.202 4.202 19 C -0.228 4.228 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.252 0.748 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -0.781 0.472 7.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.200 4.200 4 C -0.165 4.165 5 C 0.083 3.917 6 H 0.116 0.884 7 C -0.208 4.208 8 N -0.261 5.261 9 C -0.380 4.380 10 H 0.080 0.920 11 C -0.188 4.188 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.205 1.205 17 C 0.024 3.976 18 C -0.241 4.241 19 C -0.269 4.269 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.031 -0.665 0.571 7.085 hybrid contribution 0.455 0.460 -0.722 0.970 sum -6.576 -0.205 -0.152 6.580 Atomic orbital electron populations 1.21865 0.97291 1.00604 1.00320 1.20943 0.93110 0.96110 1.00303 1.21827 1.02597 0.96063 0.99503 1.22202 0.99646 0.98707 0.95963 1.20342 0.88870 0.96597 0.85933 0.88400 1.22157 1.03609 0.97652 0.97344 1.43487 1.52094 1.05485 1.25083 1.19025 1.06841 1.23639 0.88455 0.91966 1.25081 0.95841 1.02011 0.95822 1.70054 1.34004 1.33548 1.15824 0.86434 0.78806 0.80576 0.81873 1.21374 1.21803 1.20452 1.20923 0.98926 0.87150 0.90558 1.23090 0.96195 0.97672 1.07168 1.23365 0.94002 1.03985 1.05565 0.93753 0.93777 0.93457 0.89990 0.91293 0.94212 0.94193 0.93828 0.93494 0.95883 0.90445 0.95458 0.93758 0.89657 0.88527 0.91090 0.91219 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.19 37.16 0.34 -1.84 16 2 C -0.09 -1.58 2.86 -90.62 -0.26 -1.84 16 3 C -0.14 -2.60 8.96 37.16 0.33 -2.26 16 4 C -0.13 -2.41 4.07 -26.73 -0.11 -2.52 16 5 C 0.19 4.22 1.63 -67.93 -0.11 4.11 16 6 H 0.10 2.46 4.36 -51.93 -0.23 2.24 16 7 C -0.15 -3.24 9.06 37.16 0.34 -2.90 16 8 N -0.55 -12.89 2.08 -158.14 -0.33 -13.22 16 9 C -0.25 -6.51 8.26 -15.06 -0.12 -6.63 16 10 H 0.06 1.66 7.02 -52.49 -0.37 1.29 16 11 C 0.01 0.32 4.89 -17.43 -0.09 0.23 16 12 N -0.89 -24.46 10.23 55.49 0.57 -23.89 16 13 Si 0.89 21.27 29.58 -169.99 -5.03 16.24 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.13 2.86 5.30 -67.93 -0.36 2.50 16 18 C -0.20 -4.08 9.79 -26.69 -0.26 -4.34 16 19 C -0.23 -4.39 10.10 -26.69 -0.27 -4.66 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 1.71 7.62 -51.93 -0.40 1.31 16 24 H 0.07 1.46 6.46 -51.93 -0.34 1.12 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.88 7.37 -51.93 -0.38 0.50 16 29 H 0.02 0.46 7.05 -51.93 -0.37 0.09 16 30 H 0.08 1.92 7.08 -51.93 -0.37 1.55 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.25 6.79 8.32 -40.82 -0.34 6.45 16 33 H 0.09 1.73 7.04 -51.93 -0.37 1.37 16 34 H 0.10 2.15 6.84 -51.93 -0.35 1.79 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -26.21 287.84 -7.54 -33.75 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.52 Total: 2.94 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -0.57 Total: -20.16 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.24 Total: -37.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.21 -7.54 -33.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308162071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.271 kcal (2) G-P(sol) polarization free energy of solvation -26.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds