Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.42873 * 2 1 4 4 C 1.54880 * 110.49222 * 122.54378 * 2 1 3 5 5 C 1.54886 * 102.74945 * 156.75458 * 4 2 1 6 6 C 1.54259 * 104.19816 * 322.05706 * 5 4 2 7 7 H 1.09002 * 110.03209 * 264.27783 * 6 5 4 8 8 N 1.46896 * 110.03425 * 142.89239 * 6 5 4 9 9 C 1.46899 * 110.99874 * 55.00880 * 8 6 5 10 10 C 1.46896 * 111.00543 * 178.96304 * 8 6 5 11 11 C 1.52999 * 109.47630 * 170.00361 * 10 8 6 12 12 C 1.50697 * 109.47205 * 180.02562 * 11 10 8 13 13 H 1.08006 * 120.00205 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99774 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00326 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46951 * 59.99441 * 16 14 12 18 18 H 1.48502 * 109.46774 * 299.99859 * 16 14 12 19 19 H 1.48493 * 109.47319 * 179.97438 * 16 14 12 20 20 C 1.53876 * 106.59755 * 23.61034 * 6 5 4 21 21 H 1.08998 * 109.47231 * 298.90594 * 1 2 3 22 22 H 1.08991 * 109.47494 * 58.91067 * 1 2 3 23 23 H 1.09002 * 109.46888 * 178.91061 * 1 2 3 24 24 H 1.09002 * 110.75533 * 38.43417 * 4 2 1 25 25 H 1.08998 * 110.91382 * 275.14661 * 4 2 1 26 26 H 1.09006 * 110.48295 * 203.37832 * 5 4 2 27 27 H 1.09002 * 110.59953 * 80.79458 * 5 4 2 28 28 H 1.08996 * 109.47396 * 185.26750 * 9 8 6 29 29 H 1.09004 * 109.47171 * 305.27223 * 9 8 6 30 30 H 1.09000 * 109.46984 * 65.26710 * 9 8 6 31 31 H 1.09001 * 109.46971 * 49.99718 * 10 8 6 32 32 H 1.09000 * 109.47327 * 290.00365 * 10 8 6 33 33 H 1.08991 * 109.47137 * 60.00129 * 11 10 8 34 34 H 1.09003 * 109.46507 * 299.99888 * 11 10 8 35 35 H 0.96998 * 119.99845 * 359.97438 * 15 14 12 36 36 H 1.09000 * 110.03144 * 119.28256 * 20 6 5 37 37 H 1.08996 * 110.03355 * 240.71412 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0722 -0.7804 1.2230 5 6 3.4921 -1.1939 0.7625 6 6 3.3203 -1.5374 -0.7315 7 1 3.1760 -2.6109 -0.8536 8 7 4.5012 -1.0995 -1.4875 9 6 5.7305 -1.6704 -0.9209 10 6 4.3707 -1.4386 -2.9108 11 6 5.4878 -0.7557 -3.7025 12 6 5.3535 -1.1032 -5.1626 13 1 4.5517 -1.7471 -5.4930 14 6 6.2540 -0.5991 -6.0769 15 7 7.2299 0.1854 -5.6747 16 14 6.0871 -1.0292 -7.8871 17 1 4.7690 -0.5628 -8.3871 18 1 6.1887 -2.5009 -8.0575 19 1 7.1706 -0.3655 -8.6555 20 6 2.0728 -0.7782 -1.2164 21 1 -0.3633 0.4967 0.8996 22 1 -0.3634 0.5306 -0.8800 23 1 -0.3633 -1.0275 -0.0195 24 1 1.4596 -1.6596 1.4228 25 1 2.1229 -0.1389 2.1027 26 1 3.8340 -2.0673 1.3180 27 1 4.1913 -0.3668 0.8859 28 1 6.5956 -1.2574 -1.4396 29 1 5.7905 -1.4239 0.1392 30 1 5.7173 -2.7536 -1.0418 31 1 3.4033 -1.0966 -3.2786 32 1 4.4454 -2.5189 -3.0353 33 1 6.4551 -1.0978 -3.3347 34 1 5.4130 0.3246 -3.5780 35 1 7.3159 0.4096 -4.7349 36 1 2.3436 -0.0849 -2.0127 37 1 1.3222 -1.4832 -1.5738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308201325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = -26.918298 kcal Electronic energy + Delta-G solvation = -14402.160290 eV Core-core repulsion = 12178.106010 eV Total energy + Delta-G solvation = -2224.054280 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00659 -35.83941 -33.26244 -30.83063 -28.90898 -28.61246 -25.16741 -24.72211 -23.00783 -20.57178 -20.06639 -18.95782 -16.79922 -16.04310 -15.05450 -14.72712 -14.03173 -13.71032 -13.52778 -13.41084 -12.83433 -12.55858 -12.21037 -11.98235 -11.73326 -11.45461 -11.02530 -10.83487 -10.72439 -10.65336 -10.52339 -10.49488 -10.37036 -10.10579 -9.90430 -9.58470 -8.51988 -8.26756 -7.73210 -6.31805 -4.00044 3.46060 3.48410 3.67106 4.41363 4.60668 4.64275 4.75749 4.95732 5.38043 5.42415 5.46060 5.54601 5.63370 5.67738 5.70623 5.77845 5.86209 5.92881 5.97191 6.02848 6.09887 6.20308 6.24704 6.29197 6.41759 6.46056 6.50495 6.51532 6.90837 7.36851 7.48569 7.76089 7.80131 8.29695 8.51315 8.93654 9.72247 11.09347 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045213 B = 0.006385 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.143735 B = 4384.067680 C = 4769.238708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.118 4.118 6 C 0.079 3.921 7 H 0.033 0.967 8 N -0.538 5.538 9 C 0.025 3.975 10 C 0.068 3.932 11 C 0.015 3.985 12 C -0.603 4.603 13 H 0.046 0.954 14 C 0.015 3.985 15 N -0.913 5.913 16 Si 1.069 2.931 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.282 1.282 20 C -0.115 4.115 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.018 0.982 33 H 0.007 0.993 34 H 0.015 0.985 35 H 0.269 0.731 36 H 0.079 0.921 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 -2.500 12.509 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.030 4.030 7 H 0.051 0.949 8 N -0.262 5.262 9 C -0.123 4.123 10 C -0.059 4.059 11 C -0.022 4.022 12 C -0.642 4.642 13 H 0.065 0.935 14 C -0.188 4.188 15 N -0.549 5.549 16 Si 0.897 3.103 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.208 1.208 20 C -0.152 4.152 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.025 0.975 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.329 -1.753 11.043 14.562 hybrid contribution -0.732 -1.254 1.414 2.027 sum -10.061 -3.007 12.457 16.293 Atomic orbital electron populations 1.21804 0.95422 1.01479 1.01344 1.21917 0.94865 0.99595 0.94871 0.90687 1.22520 0.96123 0.99522 0.97401 1.22460 0.97247 1.01154 0.94705 1.22249 0.91244 0.96287 0.93217 0.94860 1.62293 1.01145 1.59036 1.03750 1.22366 0.93860 0.96609 0.99464 1.22219 1.01349 0.97233 0.85116 1.19211 0.92706 0.95817 0.94469 1.22021 1.15769 1.33605 0.92765 0.93543 1.25821 0.93018 0.94225 1.05772 1.70766 1.31179 1.33926 1.19066 0.83550 0.75995 0.75938 0.74800 1.21465 1.21546 1.20756 1.22301 0.95633 0.99142 0.98161 0.92999 0.92723 0.92890 0.91860 0.91875 0.92391 0.90461 0.90883 0.92238 0.96522 0.91749 0.96351 0.97463 0.96698 0.92028 0.90249 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.13 37.16 0.34 -1.13 16 2 C -0.09 -1.14 3.45 -88.96 -0.31 -1.45 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.12 -1.31 6.33 -24.75 -0.16 -1.47 16 5 C -0.12 -1.53 5.08 -25.08 -0.13 -1.65 16 6 C 0.08 1.23 2.67 -66.60 -0.18 1.05 16 7 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 8 N -0.54 -10.15 4.52 -233.55 -1.06 -11.21 16 9 C 0.03 0.44 9.02 60.06 0.54 0.98 16 10 C 0.07 1.50 4.67 -3.83 -0.02 1.48 16 11 C 0.02 0.41 4.21 -27.88 -0.12 0.29 16 12 C -0.60 -17.69 9.11 -34.44 -0.31 -18.00 16 13 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 14 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 15 N -0.91 -28.64 13.65 55.43 0.76 -27.88 16 16 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.11 -1.68 5.39 -25.61 -0.14 -1.81 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 24 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.06 7.43 -51.93 -0.39 0.68 16 28 H 0.07 1.40 6.53 -51.93 -0.34 1.06 16 29 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 30 H 0.02 0.28 8.13 -51.93 -0.42 -0.14 16 31 H 0.06 1.41 6.37 -51.93 -0.33 1.08 16 32 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 33 H 0.01 0.20 6.45 -51.93 -0.33 -0.14 16 34 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 35 H 0.27 8.45 7.22 -40.82 -0.29 8.16 16 36 H 0.08 1.34 6.74 -51.93 -0.35 0.99 16 37 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 LS Contribution 285.94 15.07 4.31 4.31 Total: -1.00 -30.80 285.94 -8.26 -39.06 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.61 Total: -3.66 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -0.57 Total: -21.34 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.30 Total: -39.09 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.80 -8.26 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308201325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.143 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds