Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.42873 * 2 1 4 4 C 1.54880 * 110.49222 * 122.54378 * 2 1 3 5 5 C 1.54886 * 102.74945 * 156.75458 * 4 2 1 6 6 C 1.54259 * 104.19816 * 322.05706 * 5 4 2 7 7 H 1.09002 * 110.03209 * 264.27783 * 6 5 4 8 8 N 1.46896 * 110.03425 * 142.89239 * 6 5 4 9 9 C 1.46899 * 110.99874 * 55.00880 * 8 6 5 10 10 C 1.46896 * 111.00543 * 178.96304 * 8 6 5 11 11 C 1.52999 * 109.47630 * 170.00361 * 10 8 6 12 12 C 1.50697 * 109.47205 * 180.02562 * 11 10 8 13 13 H 1.08006 * 120.00205 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99774 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00326 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46951 * 59.99441 * 16 14 12 18 18 H 1.48502 * 109.46774 * 299.99859 * 16 14 12 19 19 H 1.48493 * 109.47319 * 179.97438 * 16 14 12 20 20 C 1.53876 * 106.59755 * 23.61034 * 6 5 4 21 21 H 1.08998 * 109.47231 * 298.90594 * 1 2 3 22 22 H 1.08991 * 109.47494 * 58.91067 * 1 2 3 23 23 H 1.09002 * 109.46888 * 178.91061 * 1 2 3 24 24 H 1.09002 * 110.75533 * 38.43417 * 4 2 1 25 25 H 1.08998 * 110.91382 * 275.14661 * 4 2 1 26 26 H 1.09006 * 110.48295 * 203.37832 * 5 4 2 27 27 H 1.09002 * 110.59953 * 80.79458 * 5 4 2 28 28 H 1.08996 * 109.47396 * 185.26750 * 9 8 6 29 29 H 1.09004 * 109.47171 * 305.27223 * 9 8 6 30 30 H 1.09000 * 109.46984 * 65.26710 * 9 8 6 31 31 H 1.09001 * 109.46971 * 49.99718 * 10 8 6 32 32 H 1.09000 * 109.47327 * 290.00365 * 10 8 6 33 33 H 1.08991 * 109.47137 * 60.00129 * 11 10 8 34 34 H 1.09003 * 109.46507 * 299.99888 * 11 10 8 35 35 H 0.96998 * 119.99845 * 359.97438 * 15 14 12 36 36 H 1.09000 * 110.03144 * 119.28256 * 20 6 5 37 37 H 1.08996 * 110.03355 * 240.71412 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0722 -0.7804 1.2230 5 6 3.4921 -1.1939 0.7625 6 6 3.3203 -1.5374 -0.7315 7 1 3.1760 -2.6109 -0.8536 8 7 4.5012 -1.0995 -1.4875 9 6 5.7305 -1.6704 -0.9209 10 6 4.3707 -1.4386 -2.9108 11 6 5.4878 -0.7557 -3.7025 12 6 5.3535 -1.1032 -5.1626 13 1 4.5517 -1.7471 -5.4930 14 6 6.2540 -0.5991 -6.0769 15 7 7.2299 0.1854 -5.6747 16 14 6.0871 -1.0292 -7.8871 17 1 4.7690 -0.5628 -8.3871 18 1 6.1887 -2.5009 -8.0575 19 1 7.1706 -0.3655 -8.6555 20 6 2.0728 -0.7782 -1.2164 21 1 -0.3633 0.4967 0.8996 22 1 -0.3634 0.5306 -0.8800 23 1 -0.3633 -1.0275 -0.0195 24 1 1.4596 -1.6596 1.4228 25 1 2.1229 -0.1389 2.1027 26 1 3.8340 -2.0673 1.3180 27 1 4.1913 -0.3668 0.8859 28 1 6.5956 -1.2574 -1.4396 29 1 5.7905 -1.4239 0.1392 30 1 5.7173 -2.7536 -1.0418 31 1 3.4033 -1.0966 -3.2786 32 1 4.4454 -2.5189 -3.0353 33 1 6.4551 -1.0978 -3.3347 34 1 5.4130 0.3246 -3.5780 35 1 7.3159 0.4096 -4.7349 36 1 2.3436 -0.0849 -2.0127 37 1 1.3222 -1.4832 -1.5738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308201325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = -45.574771 kcal Electronic energy + Delta-G solvation = -14402.969295 eV Core-core repulsion = 12178.106010 eV Total energy + Delta-G solvation = -2224.863285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25479 -37.29981 -35.35811 -32.21339 -30.55327 -29.80423 -26.92421 -25.91190 -24.79168 -22.35894 -21.10226 -20.22560 -18.95863 -17.40310 -16.26013 -16.20959 -15.64471 -15.57351 -14.96745 -14.49107 -14.26335 -14.18605 -13.71871 -13.59109 -12.94375 -12.81363 -12.68378 -12.47887 -12.14606 -11.96688 -11.86274 -11.68990 -11.58037 -11.49071 -11.46554 -11.31279 -10.72596 -10.54750 -9.26494 -8.71729 -6.41763 1.51282 1.60418 1.80012 2.55086 3.00770 3.14349 3.58564 3.71931 3.96457 4.17712 4.28492 4.35988 4.41305 4.51969 4.55703 4.58065 4.68038 4.71675 4.80743 4.84191 4.94670 4.97293 5.01591 5.07611 5.12586 5.16650 5.29968 5.35504 5.39122 5.40827 5.56905 5.87245 6.14285 6.18946 6.29662 6.55664 7.41052 8.69349 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045213 B = 0.006385 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.143735 B = 4384.067680 C = 4769.238708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.073 3.927 7 H 0.033 0.967 8 N -0.548 5.548 9 C 0.028 3.972 10 C 0.085 3.915 11 C 0.021 3.979 12 C -0.622 4.622 13 H 0.049 0.951 14 C -0.038 4.038 15 N -0.936 5.936 16 Si 1.120 2.880 17 H -0.268 1.268 18 H -0.268 1.268 19 H -0.282 1.282 20 C -0.116 4.116 21 H 0.068 0.932 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.013 0.987 33 H -0.009 1.009 34 H -0.012 1.012 35 H 0.254 0.746 36 H 0.049 0.951 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 -3.366 13.324 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.035 4.035 7 H 0.051 0.949 8 N -0.273 5.273 9 C -0.120 4.120 10 C -0.042 4.042 11 C -0.016 4.016 12 C -0.661 4.661 13 H 0.068 0.932 14 C -0.235 4.235 15 N -0.573 5.573 16 Si 0.940 3.060 17 H -0.193 1.193 18 H -0.193 1.193 19 H -0.207 1.207 20 C -0.154 4.154 21 H 0.087 0.913 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.009 0.991 34 H 0.006 0.994 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.840 -2.625 11.898 16.308 hybrid contribution -0.262 -0.971 1.217 1.579 sum -11.103 -3.596 13.115 17.555 Atomic orbital electron populations 1.21771 0.93732 1.02132 1.02013 1.21903 0.96266 0.98778 0.94154 0.91681 1.22503 0.94682 1.00173 0.97267 1.22447 0.98574 1.01541 0.92583 1.22436 0.90011 0.96319 0.94693 0.94889 1.62228 1.03069 1.59728 1.02276 1.22360 0.92313 0.96546 1.00809 1.21844 0.99237 0.96073 0.87095 1.19080 0.93676 0.94374 0.94471 1.22448 1.15855 1.33549 0.94201 0.93229 1.27504 0.92146 0.93244 1.10602 1.70909 1.32601 1.35601 1.18158 0.82915 0.76862 0.76928 0.69263 1.19311 1.19339 1.20680 1.22311 0.95621 0.98890 0.98554 0.91332 0.93171 0.92179 0.90410 0.90064 0.90747 0.91323 0.93443 0.89142 0.96137 0.91846 0.96862 0.99115 0.99413 0.93645 0.93265 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.13 71.98 0.66 -1.85 16 2 C -0.09 -2.07 3.45 -9.72 -0.03 -2.10 16 3 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.11 -2.06 6.33 31.88 0.20 -1.86 16 5 C -0.11 -2.66 5.08 31.67 0.16 -2.50 16 6 C 0.07 2.21 2.67 45.64 0.12 2.33 16 7 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 8 N -0.55 -20.81 4.52 -892.81 -4.04 -24.85 16 9 C 0.03 0.96 9.02 127.69 1.15 2.12 16 10 C 0.09 3.86 4.67 86.30 0.40 4.26 16 11 C 0.02 1.19 4.21 29.85 0.13 1.31 16 12 C -0.62 -37.16 9.11 25.60 0.23 -36.92 16 13 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 14 C -0.04 -2.26 5.46 84.65 0.46 -1.79 16 15 N -0.94 -60.01 13.65 21.45 0.29 -59.71 16 16 Si 1.12 51.42 29.90 68.60 2.05 53.47 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 C -0.12 -3.30 5.39 31.32 0.17 -3.13 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 1.00 8.11 -2.39 -0.02 0.98 16 24 H 0.08 1.30 8.06 -2.39 -0.02 1.28 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.07 1.75 7.43 -2.39 -0.02 1.73 16 28 H 0.05 1.87 6.53 -2.39 -0.02 1.85 16 29 H 0.09 2.55 6.43 -2.38 -0.02 2.54 16 30 H 0.02 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.06 2.85 6.37 -2.39 -0.02 2.84 16 32 H 0.01 0.60 8.11 -2.39 -0.02 0.59 16 33 H -0.01 -0.55 6.45 -2.39 -0.02 -0.56 16 34 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 35 H 0.25 16.64 7.22 -92.71 -0.67 15.97 16 36 H 0.05 1.69 6.74 -2.39 -0.02 1.68 16 37 H 0.07 1.78 7.82 -2.39 -0.02 1.76 16 Total: -1.00 -67.14 285.94 3.06 -64.08 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.10 Total: 7.17 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 3.65 Total: -40.14 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -3.74 Total: -84.56 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -67.14 3.06 -64.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308201325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.500 kcal (2) G-P(sol) polarization free energy of solvation -67.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds