Wall clock time and date at job start Mon Mar 30 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46904 * 110.99921 * 275.00164 * 12 2 1 14 14 H 1.09004 * 109.46883 * 34.99652 * 13 12 2 15 15 C 1.52998 * 109.46894 * 274.99795 * 13 12 2 16 16 C 1.52997 * 109.47214 * 154.99719 * 13 12 2 17 17 C 1.53005 * 109.47306 * 294.99658 * 16 13 12 18 18 C 1.52997 * 109.47306 * 180.02562 * 17 16 13 19 19 C 1.52996 * 117.50115 * 243.74789 * 18 17 16 20 20 C 1.53000 * 117.50083 * 175.08795 * 18 17 16 21 21 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99768 * 38.94701 * 12 2 1 26 26 H 1.09005 * 109.47024 * 179.97438 * 15 13 12 27 27 H 1.09004 * 109.47239 * 299.99639 * 15 13 12 28 28 H 1.08997 * 109.47387 * 59.99877 * 15 13 12 29 29 H 1.09000 * 109.47376 * 54.99605 * 16 13 12 30 30 H 1.08999 * 109.47059 * 175.00073 * 16 13 12 31 31 H 1.09000 * 109.46860 * 300.00263 * 17 16 13 32 32 H 1.08999 * 109.46723 * 60.00209 * 17 16 13 33 33 H 1.09007 * 115.54951 * 29.41963 * 18 17 16 34 34 H 1.09000 * 117.49555 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.50088 * 145.01706 * 19 18 17 36 36 H 1.09000 * 117.50086 * 214.98447 * 20 18 17 37 37 H 1.09004 * 117.49448 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2576 0.9329 2.2906 15 6 3.4111 0.9808 2.3223 16 6 1.9770 -0.5798 3.6453 17 6 0.5983 -1.2381 3.7276 18 6 0.4926 -2.0399 5.0264 19 6 0.3198 -3.5555 4.9089 20 6 -0.8570 -2.6828 5.3519 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7011 1.1560 -3.4844 25 1 1.4495 -1.4979 1.4099 26 1 3.4575 1.6601 3.1736 27 1 4.2360 0.2705 2.3786 28 1 3.4862 1.5524 1.3973 29 1 2.7486 -1.3495 3.6605 30 1 2.1125 0.0873 4.4966 31 1 -0.1733 -0.4683 3.7124 32 1 0.4629 -1.9052 2.8763 33 1 1.0853 -1.6640 5.8604 34 1 0.2819 -3.9814 3.9063 35 1 0.7986 -4.1768 5.6658 36 1 -1.1522 -2.7302 6.4001 37 1 -1.6698 -2.5341 4.6409 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308255196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:42 Heat of formation + Delta-G solvation = 1.645892 kcal Electronic energy + Delta-G solvation = -14314.010499 eV Core-core repulsion = 12091.194855 eV Total energy + Delta-G solvation = -2222.815643 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.05818 -36.54641 -33.57194 -31.22654 -29.43835 -26.88772 -25.08203 -23.85271 -22.35728 -20.50482 -20.26358 -19.43091 -16.25282 -15.69108 -15.07636 -14.77490 -14.33007 -13.59157 -13.46625 -12.88403 -12.44255 -12.07271 -11.63818 -11.54051 -11.44350 -11.18905 -11.14104 -10.94379 -10.82487 -10.77423 -10.46344 -10.27707 -10.06527 -9.92506 -9.74846 -9.57906 -8.90788 -8.30249 -7.12451 -5.93191 -3.96010 3.37447 3.41076 3.44732 3.82998 4.48319 4.68365 4.96211 4.97633 5.25652 5.30103 5.38296 5.50454 5.62451 5.63876 5.74351 5.92653 6.01208 6.07344 6.12405 6.20886 6.27387 6.35509 6.49422 6.60723 6.72127 6.75775 6.89274 6.92127 7.19152 7.47913 7.80171 7.96050 8.36559 8.65368 8.72555 9.11432 9.69132 11.13819 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036151 B = 0.006845 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.342398 B = 4089.428105 C = 4386.386597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.681 5.681 13 C 0.081 3.919 14 H 0.033 0.967 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.093 4.093 18 C -0.146 4.146 19 C -0.181 4.181 20 C -0.187 4.187 21 H 0.025 0.975 22 H 0.004 0.996 23 H 0.088 0.912 24 H 0.259 0.741 25 H 0.324 0.676 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 -3.605 13.111 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.312 5.312 13 C -0.029 4.029 14 H 0.051 0.949 15 C -0.192 4.192 16 C -0.152 4.152 17 C -0.131 4.131 18 C -0.165 4.165 19 C -0.218 4.218 20 C -0.224 4.224 21 H 0.044 0.956 22 H 0.023 0.977 23 H 0.106 0.894 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.554 -3.403 12.796 13.253 hybrid contribution -0.766 -0.322 -0.671 1.067 sum -1.320 -3.725 12.126 12.754 Atomic orbital electron populations 1.22427 1.00953 0.98978 1.00365 1.19179 0.89355 0.94466 0.86687 0.94866 1.21151 1.29948 1.12396 0.89715 0.92106 1.24953 0.95403 0.95249 0.98991 1.69880 1.37387 1.23301 1.23312 0.86586 0.79150 0.79611 0.82151 1.20442 1.21512 1.20330 1.60887 1.58072 1.08910 1.03367 1.21440 0.96629 0.94387 0.90489 0.94923 1.21747 0.97607 0.99298 1.00594 1.21731 0.96655 0.99379 0.97454 1.21255 0.97924 0.98795 0.95087 1.22359 0.99632 0.94582 0.99889 1.23038 1.02535 0.93483 1.02785 1.22965 0.92285 1.05477 1.01646 0.95564 0.97701 0.89378 0.93110 0.85760 0.94057 0.92642 0.92455 0.91374 0.92322 0.91964 0.91363 0.88145 0.88605 0.89246 0.89266 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.92 37.16 0.33 -3.78 16 2 C 0.21 5.38 2.39 -68.87 -0.16 5.21 16 3 H 0.03 0.94 7.11 -51.93 -0.37 0.57 16 4 C -0.49 -13.87 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.09 11.31 55.43 0.63 -25.46 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.68 -14.60 6.04 -100.95 -0.61 -15.21 16 13 C 0.08 1.47 2.46 -67.71 -0.17 1.30 16 14 H 0.03 0.63 7.11 -51.93 -0.37 0.27 16 15 C -0.13 -2.34 9.40 37.16 0.35 -1.99 16 16 C -0.11 -1.66 4.76 -26.73 -0.13 -1.79 16 17 C -0.09 -1.29 5.32 -26.73 -0.14 -1.43 16 18 C -0.15 -1.73 5.73 -90.62 -0.52 -2.25 16 19 C -0.18 -2.01 10.18 -26.70 -0.27 -2.29 16 20 C -0.19 -2.01 10.25 -26.70 -0.27 -2.29 16 21 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 22 H 0.00 0.09 7.43 -51.93 -0.39 -0.30 16 23 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.32 6.64 6.21 -39.29 -0.24 6.39 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.12 7.43 -51.93 -0.39 0.73 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.03 6.16 -51.93 -0.32 0.71 16 33 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.10 1.11 8.03 -51.93 -0.42 0.69 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -28.39 294.78 -8.52 -36.91 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.57 Total: 4.57 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -1.38 Total: -22.04 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.02 Total: -40.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.39 -8.52 -36.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308255196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.556 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds