Wall clock time and date at job start Mon Mar 30 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46904 * 110.99921 * 275.00164 * 12 2 1 14 14 H 1.09004 * 109.46883 * 34.99652 * 13 12 2 15 15 C 1.52998 * 109.46894 * 274.99795 * 13 12 2 16 16 C 1.52997 * 109.47214 * 154.99719 * 13 12 2 17 17 C 1.53005 * 109.47306 * 294.99658 * 16 13 12 18 18 C 1.52997 * 109.47306 * 180.02562 * 17 16 13 19 19 C 1.52996 * 117.50115 * 243.74789 * 18 17 16 20 20 C 1.53000 * 117.50083 * 175.08795 * 18 17 16 21 21 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99768 * 38.94701 * 12 2 1 26 26 H 1.09005 * 109.47024 * 179.97438 * 15 13 12 27 27 H 1.09004 * 109.47239 * 299.99639 * 15 13 12 28 28 H 1.08997 * 109.47387 * 59.99877 * 15 13 12 29 29 H 1.09000 * 109.47376 * 54.99605 * 16 13 12 30 30 H 1.08999 * 109.47059 * 175.00073 * 16 13 12 31 31 H 1.09000 * 109.46860 * 300.00263 * 17 16 13 32 32 H 1.08999 * 109.46723 * 60.00209 * 17 16 13 33 33 H 1.09007 * 115.54951 * 29.41963 * 18 17 16 34 34 H 1.09000 * 117.49555 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.50088 * 145.01706 * 19 18 17 36 36 H 1.09000 * 117.50086 * 214.98447 * 20 18 17 37 37 H 1.09004 * 117.49448 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2576 0.9329 2.2906 15 6 3.4111 0.9808 2.3223 16 6 1.9770 -0.5798 3.6453 17 6 0.5983 -1.2381 3.7276 18 6 0.4926 -2.0399 5.0264 19 6 0.3198 -3.5555 4.9089 20 6 -0.8570 -2.6828 5.3519 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7011 1.1560 -3.4844 25 1 1.4495 -1.4979 1.4099 26 1 3.4575 1.6601 3.1736 27 1 4.2360 0.2705 2.3786 28 1 3.4862 1.5524 1.3973 29 1 2.7486 -1.3495 3.6605 30 1 2.1125 0.0873 4.4966 31 1 -0.1733 -0.4683 3.7124 32 1 0.4629 -1.9052 2.8763 33 1 1.0853 -1.6640 5.8604 34 1 0.2819 -3.9814 3.9063 35 1 0.7986 -4.1768 5.6658 36 1 -1.1522 -2.7302 6.4001 37 1 -1.6698 -2.5341 4.6409 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308255196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:42 Heat of formation + Delta-G solvation = -14.268800 kcal Electronic energy + Delta-G solvation = -14314.700612 eV Core-core repulsion = 12091.194855 eV Total energy + Delta-G solvation = -2223.505756 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29571 -37.89292 -35.41582 -33.04091 -30.80441 -28.69031 -27.22622 -25.08728 -23.19813 -22.34295 -21.26169 -21.00240 -18.32421 -16.99275 -16.59048 -16.35626 -15.75722 -15.00346 -14.73741 -14.49729 -14.22754 -13.68880 -13.34285 -12.99281 -12.92255 -12.77423 -12.50035 -12.42243 -12.33495 -12.17004 -12.11594 -11.94781 -11.71535 -11.48995 -10.98031 -10.88569 -10.69194 -10.46539 -8.89924 -8.08346 -6.19470 1.42962 1.44915 1.52661 2.44768 2.95119 3.19576 3.66664 3.71973 4.03062 4.07178 4.18062 4.34049 4.43331 4.56838 4.70877 4.74651 4.81071 4.82885 4.90877 4.95591 4.99980 5.05741 5.10110 5.20214 5.22636 5.30045 5.35620 5.45580 5.50719 5.52948 5.70450 5.86713 6.31087 6.71481 6.90393 6.99522 7.50738 8.97023 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036151 B = 0.006845 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.342398 B = 4089.428105 C = 4386.386597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.000 1.000 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.077 3.923 14 H 0.019 0.981 15 C -0.131 4.131 16 C -0.102 4.102 17 C -0.090 4.090 18 C -0.152 4.152 19 C -0.183 4.183 20 C -0.182 4.182 21 H 0.029 0.971 22 H 0.022 0.978 23 H 0.060 0.940 24 H 0.260 0.740 25 H 0.329 0.671 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 -4.473 14.399 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.109 3.891 3 H 0.018 0.982 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.033 4.033 14 H 0.037 0.963 15 C -0.189 4.189 16 C -0.140 4.140 17 C -0.127 4.127 18 C -0.170 4.170 19 C -0.220 4.220 20 C -0.219 4.219 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.148 0.852 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.296 -4.278 14.101 14.739 hybrid contribution -0.846 -0.022 -1.032 1.335 sum -1.142 -4.300 13.069 13.806 Atomic orbital electron populations 1.22222 1.00313 0.98935 0.99835 1.18912 0.89698 0.92695 0.87843 0.98189 1.21456 1.30255 1.12470 0.91204 0.92865 1.25734 0.95485 0.95923 1.01913 1.70012 1.38075 1.24369 1.23963 0.85577 0.78629 0.78679 0.78493 1.19655 1.20962 1.19928 1.60778 1.57760 1.09481 1.03516 1.21572 0.96500 0.94147 0.91054 0.96307 1.21721 0.97239 0.99502 1.00392 1.21628 0.97106 0.99307 0.95925 1.21172 0.97263 0.98518 0.95795 1.22309 1.00859 0.94748 0.99122 1.23099 1.02863 0.93243 1.02828 1.23038 0.91718 1.04590 1.02568 0.95206 0.95902 0.92098 0.93060 0.85159 0.90842 0.92387 0.95551 0.91212 0.89896 0.92612 0.93124 0.86725 0.89625 0.87658 0.87458 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.62 8.92 71.98 0.64 -6.98 16 2 C 0.22 11.31 2.39 44.17 0.11 11.42 16 3 H 0.00 0.01 7.11 -2.38 -0.02 -0.01 16 4 C -0.52 -29.39 8.84 25.60 0.23 -29.16 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.41 5.30 84.66 0.45 0.86 16 7 N -0.92 -54.43 11.31 21.45 0.24 -54.19 16 8 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.68 -29.44 6.04 -473.31 -2.86 -32.30 16 13 C 0.08 2.75 2.46 44.91 0.11 2.86 16 14 H 0.02 0.73 7.11 -2.39 -0.02 0.71 16 15 C -0.13 -4.44 9.40 71.98 0.68 -3.76 16 16 C -0.10 -2.76 4.76 30.59 0.15 -2.61 16 17 C -0.09 -2.35 5.32 30.59 0.16 -2.19 16 18 C -0.15 -3.23 5.73 -10.80 -0.06 -3.29 16 19 C -0.18 -3.69 10.18 30.62 0.31 -3.38 16 20 C -0.18 -3.52 10.25 30.62 0.31 -3.21 16 21 H 0.03 1.40 8.13 -2.38 -0.02 1.38 16 22 H 0.02 1.00 7.43 -2.39 -0.02 0.98 16 23 H 0.06 3.37 6.06 -2.39 -0.01 3.35 16 24 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 25 H 0.33 13.48 6.21 -89.69 -0.56 12.92 16 26 H 0.07 1.99 8.14 -2.38 -0.02 1.98 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.03 1.03 7.43 -2.39 -0.02 1.01 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.49 6.16 -2.39 -0.01 1.48 16 33 H 0.11 2.13 8.08 -2.38 -0.02 2.11 16 34 H 0.09 1.89 8.03 -2.39 -0.02 1.87 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -60.69 294.78 2.95 -57.74 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.46 Total: 21.34 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 3.08 Total: -39.44 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.62 Total: -86.49 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -60.69 2.95 -57.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308255196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.469 kcal (2) G-P(sol) polarization free energy of solvation -60.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds