Wall clock time and date at job start Mon Mar 30 2020 03:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 60.00328 * 8 6 4 10 10 H 1.48495 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47239 * 300.00048 * 8 6 4 12 12 N 1.46904 * 109.46892 * 240.00029 * 2 1 3 13 13 C 1.46903 * 111.00074 * 85.00326 * 12 2 1 14 14 H 1.09008 * 109.46597 * 324.99930 * 13 12 2 15 15 C 1.52995 * 109.47270 * 84.99713 * 13 12 2 16 16 C 1.52997 * 109.47214 * 205.00223 * 13 12 2 17 17 C 1.53007 * 109.47241 * 64.99540 * 16 13 12 18 18 C 1.53003 * 109.46691 * 180.02562 * 17 16 13 19 19 C 1.53004 * 117.49395 * 243.61648 * 18 17 16 20 20 C 1.52999 * 60.00045 * 252.51510 * 19 18 17 21 21 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 23 23 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 24 24 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 25 25 H 1.00902 * 110.99875 * 208.95411 * 12 2 1 26 26 H 1.09005 * 109.47279 * 299.99894 * 15 13 12 27 27 H 1.08995 * 109.47303 * 60.00306 * 15 13 12 28 28 H 1.09005 * 109.46837 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47336 * 184.99600 * 16 13 12 30 30 H 1.08999 * 109.46699 * 304.99685 * 16 13 12 31 31 H 1.09003 * 109.46770 * 299.99955 * 17 16 13 32 32 H 1.08990 * 109.47219 * 60.00187 * 17 16 13 33 33 H 1.09000 * 115.55391 * 29.32956 * 18 17 16 34 34 H 1.08996 * 117.49830 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.49249 * 145.02069 * 19 18 17 36 36 H 1.08998 * 117.50034 * 252.51453 * 20 19 18 37 37 H 1.09001 * 117.49456 * 107.49168 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3470 14 1 1.2575 0.9330 -2.2907 15 6 3.4110 0.9808 -2.3224 16 6 1.9769 -0.5796 -3.6455 17 6 0.5981 -1.2379 -3.7277 18 6 0.4929 -2.0406 -5.0259 19 6 -0.5519 -1.5933 -6.0503 20 6 -0.7728 -2.8729 -5.2412 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.7082 1.1608 3.4845 25 1 2.9172 -1.1205 -1.0288 26 1 3.4862 1.5525 -1.3973 27 1 4.2358 0.2706 -2.3787 28 1 3.4574 1.6602 -3.1736 29 1 2.1123 0.0875 -4.4967 30 1 2.7485 -1.3493 -3.6607 31 1 0.4627 -1.9051 -2.8763 32 1 -0.1735 -0.4683 -3.7124 33 1 1.4312 -2.4439 -5.4068 34 1 -1.1639 -0.7270 -5.7995 35 1 -0.3008 -1.7020 -7.1054 36 1 -0.6671 -3.8235 -5.7640 37 1 -1.5304 -2.8486 -4.4579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308255197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:46 Heat of formation + Delta-G solvation = -1.006759 kcal Electronic energy + Delta-G solvation = -14267.602254 eV Core-core repulsion = 12044.671583 eV Total energy + Delta-G solvation = -2222.930671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.83814 -36.53493 -33.55655 -31.22577 -29.36070 -26.84366 -25.12366 -23.82286 -22.26588 -20.44003 -20.10488 -19.38424 -16.37919 -15.46740 -15.13408 -14.40391 -14.15555 -13.73969 -13.45868 -12.72678 -12.57236 -12.21134 -11.75362 -11.48610 -11.38125 -11.21932 -11.00051 -10.85180 -10.77539 -10.62597 -10.33539 -10.15954 -10.07382 -9.91319 -9.64299 -9.56281 -8.79004 -8.43832 -7.14253 -5.99313 -4.05322 3.32680 3.37109 3.39966 3.95437 4.42759 4.81064 5.08322 5.10294 5.27646 5.34771 5.49234 5.51318 5.70018 5.79937 5.90369 5.93937 6.01167 6.10456 6.20177 6.27424 6.32871 6.43747 6.52830 6.70460 6.80140 6.89005 6.95803 7.20733 7.31001 7.58967 7.82203 7.96165 8.32619 8.47695 8.75453 9.06830 9.60475 11.06942 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039929 B = 0.006563 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.082633 B = 4265.117332 C = 4535.245124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.681 5.681 13 C 0.080 3.920 14 H 0.068 0.932 15 C -0.177 4.177 16 C -0.098 4.098 17 C -0.081 4.081 18 C -0.145 4.145 19 C -0.188 4.188 20 C -0.185 4.185 21 H 0.030 0.970 22 H 0.078 0.922 23 H 0.003 0.997 24 H 0.261 0.739 25 H 0.329 0.671 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 -2.623 -12.559 12.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.031 4.031 14 H 0.087 0.913 15 C -0.237 4.237 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.163 4.163 19 C -0.225 4.225 20 C -0.222 4.222 21 H 0.049 0.951 22 H 0.097 0.903 23 H 0.022 0.978 24 H 0.070 0.930 25 H 0.146 0.854 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.667 -2.748 -12.568 12.882 hybrid contribution 1.069 0.140 1.071 1.519 sum 0.402 -2.608 -11.498 11.796 Atomic orbital electron populations 1.21710 0.98068 0.99182 0.99157 1.19072 0.92399 0.92382 0.85719 0.98205 1.21247 1.31177 1.12546 0.90573 0.92392 1.24918 0.95121 0.94986 0.98991 1.69891 1.36710 1.22927 1.23454 0.86608 0.79034 0.79809 0.82201 1.20397 1.21356 1.20236 1.60809 1.31918 1.32532 1.05873 1.21545 0.95795 0.93614 0.92109 0.91348 1.22485 0.99064 1.00641 1.01464 1.21513 0.96995 0.98746 0.96371 1.21092 0.97172 0.98555 0.95001 1.22472 0.93357 1.02406 0.98086 1.23011 1.04011 0.98658 0.96787 1.22934 1.01065 0.94882 1.03340 0.95097 0.90310 0.97816 0.92954 0.85369 0.92431 0.93135 0.93489 0.93112 0.92540 0.89749 0.92721 0.88365 0.89038 0.89539 0.89394 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.17 37.15 0.34 -2.74 16 2 C 0.21 5.35 2.41 -68.87 -0.17 5.19 16 3 H 0.00 0.01 7.11 -51.93 -0.37 -0.36 16 4 C -0.52 -14.22 8.59 -34.44 -0.30 -14.51 16 5 H 0.06 1.57 7.62 -52.48 -0.40 1.17 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.32 5.50 -100.96 -0.56 -14.87 16 13 C 0.08 1.43 2.40 -67.72 -0.16 1.27 16 14 H 0.07 1.32 7.11 -51.92 -0.37 0.95 16 15 C -0.18 -2.93 9.15 37.15 0.34 -2.59 16 16 C -0.10 -1.47 4.85 -26.73 -0.13 -1.60 16 17 C -0.08 -1.21 5.38 -26.73 -0.14 -1.36 16 18 C -0.15 -1.85 5.74 -90.61 -0.52 -2.37 16 19 C -0.19 -2.13 10.18 -26.73 -0.27 -2.41 16 20 C -0.19 -2.18 10.25 -26.73 -0.27 -2.46 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 23 H 0.00 0.07 7.43 -51.93 -0.39 -0.32 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.33 6.88 7.96 -39.29 -0.31 6.56 16 26 H 0.06 1.07 7.43 -51.93 -0.39 0.68 16 27 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.46 7.75 -51.93 -0.40 1.06 16 32 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 33 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -27.67 297.00 -8.55 -36.23 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.70 Total: 4.75 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -1.38 Total: -21.95 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.07 Total: -39.89 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.67 -8.55 -36.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308255197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.221 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds