Wall clock time and date at job start Mon Mar 30 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47430 * 2 1 4 4 C 1.50698 * 109.47418 * 239.99784 * 2 1 3 5 5 H 1.07998 * 120.00364 * 240.00514 * 4 2 1 6 6 C 1.37881 * 119.99817 * 60.27555 * 4 2 1 7 7 N 1.31507 * 119.99921 * 359.72752 * 6 4 2 8 8 Si 1.86801 * 119.99896 * 179.72398 * 6 4 2 9 9 H 1.48501 * 109.47201 * 60.00385 * 8 6 4 10 10 H 1.48500 * 109.47170 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47405 * 300.00405 * 8 6 4 12 12 N 1.46906 * 109.46986 * 120.00133 * 2 1 3 13 13 C 1.46903 * 110.99874 * 270.87308 * 12 2 1 14 14 H 1.09000 * 109.47186 * 2.62528 * 13 12 2 15 15 C 1.53003 * 109.47259 * 122.62378 * 13 12 2 16 16 C 1.52995 * 109.47239 * 242.62438 * 13 12 2 17 17 C 1.53006 * 109.47051 * 64.99755 * 16 13 12 18 18 C 1.52995 * 109.47051 * 179.97438 * 17 16 13 19 19 C 1.53005 * 117.50083 * 243.62218 * 18 17 16 20 20 C 1.53003 * 59.99949 * 252.51226 * 19 18 17 21 21 H 1.08996 * 109.47356 * 292.64103 * 1 2 3 22 22 H 1.08999 * 109.46836 * 52.63970 * 1 2 3 23 23 H 1.08997 * 109.47137 * 172.63822 * 1 2 3 24 24 H 0.97003 * 119.99969 * 179.97438 * 7 6 4 25 25 H 1.00893 * 111.00587 * 146.91796 * 12 2 1 26 26 H 1.08996 * 109.47265 * 188.07466 * 15 13 12 27 27 H 1.09001 * 109.46910 * 308.07649 * 15 13 12 28 28 H 1.09002 * 109.46795 * 68.06950 * 15 13 12 29 29 H 1.08997 * 109.47244 * 184.99700 * 16 13 12 30 30 H 1.08997 * 109.47135 * 305.00379 * 16 13 12 31 31 H 1.08997 * 109.47052 * 300.00063 * 17 16 13 32 32 H 1.08997 * 109.46642 * 60.00322 * 17 16 13 33 33 H 1.09002 * 115.55339 * 29.33396 * 18 17 16 34 34 H 1.09004 * 117.49490 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.49592 * 145.02081 * 19 18 17 36 36 H 1.08997 * 117.49546 * 252.50820 * 20 19 18 37 37 H 1.08999 * 117.49609 * 107.49193 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.7040 -0.2361 -2.4827 7 7 0.9480 0.8332 -2.6034 8 14 2.3331 -1.1122 -4.0078 9 1 1.8388 -2.5125 -4.0137 10 1 1.8431 -0.4087 -5.2204 11 1 3.8181 -1.1116 -4.0020 12 7 2.0197 -0.6926 1.1995 13 6 2.1754 0.2434 2.3210 14 1 1.8448 1.2358 2.0146 15 6 1.3302 -0.2331 3.5041 16 6 3.6468 0.3015 2.7362 17 6 4.4755 0.8954 1.5953 18 6 5.9468 0.9541 2.0106 19 6 6.5949 2.3357 2.1222 20 6 6.9601 1.4110 0.9592 21 1 -0.3634 0.3956 0.9484 22 1 -0.3633 0.6236 -0.8168 23 1 -0.3633 -1.0192 -0.1317 24 1 0.7173 1.1671 -3.4844 25 1 2.8843 -1.1768 1.0099 26 1 1.3308 0.5305 4.2819 27 1 0.3077 -0.4120 3.1713 28 1 1.7499 -1.1572 3.9016 29 1 3.7496 0.9264 3.6233 30 1 4.0020 -0.7049 2.9574 31 1 4.3727 0.2705 0.7081 32 1 4.1204 1.9018 1.3740 33 1 6.2665 0.1893 2.7185 34 1 5.9727 3.2027 1.9001 35 1 7.3408 2.4800 2.9038 36 1 7.9463 0.9472 0.9756 37 1 6.5784 1.6699 -0.0285 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308255198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:49 Heat of formation + Delta-G solvation = 0.213476 kcal Electronic energy + Delta-G solvation = -14459.634895 eV Core-core repulsion = 12236.757137 eV Total energy + Delta-G solvation = -2222.877758 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.96202 -36.44346 -33.53504 -31.09016 -29.41737 -27.12975 -25.02731 -23.70721 -22.22292 -20.28216 -20.13784 -19.57903 -16.38133 -15.46979 -15.08799 -14.51646 -14.27329 -13.70329 -13.13410 -13.01276 -12.50280 -12.16149 -11.54103 -11.46336 -11.38344 -11.13579 -10.98408 -10.93608 -10.83631 -10.63896 -10.45769 -10.10118 -10.08830 -9.87911 -9.66268 -9.56575 -8.74057 -8.44112 -7.15952 -5.99548 -4.05224 3.32181 3.36697 3.39555 3.96814 4.42618 4.80162 5.09685 5.11587 5.25802 5.34320 5.44284 5.54630 5.68511 5.74164 5.89969 6.00850 6.08401 6.13485 6.24765 6.27136 6.36050 6.41187 6.52489 6.69419 6.75105 6.85409 6.96815 7.21676 7.33170 7.60257 7.82971 7.97391 8.29467 8.49046 8.76525 9.07901 9.60579 11.07055 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021699 B = 0.009880 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.077715 B = 2833.461201 C = 3795.833707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.685 5.685 13 C 0.080 3.920 14 H 0.056 0.944 15 C -0.133 4.133 16 C -0.127 4.127 17 C -0.094 4.094 18 C -0.145 4.145 19 C -0.186 4.186 20 C -0.184 4.184 21 H 0.005 0.995 22 H 0.073 0.927 23 H 0.030 0.970 24 H 0.260 0.740 25 H 0.331 0.669 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 1.245 8.798 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.317 5.317 13 C -0.031 4.031 14 H 0.074 0.926 15 C -0.192 4.192 16 C -0.166 4.166 17 C -0.131 4.131 18 C -0.163 4.163 19 C -0.223 4.223 20 C -0.221 4.221 21 H 0.024 0.976 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.149 0.851 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.454 1.165 8.836 11.004 hybrid contribution 1.128 0.081 -1.187 1.640 sum 7.582 1.246 7.649 10.842 Atomic orbital electron populations 1.21696 0.98137 1.00016 0.98040 1.19173 0.92412 0.92234 0.85618 0.97953 1.21278 1.31523 1.12363 0.90669 0.92441 1.24904 0.95066 0.94963 0.98936 1.69906 1.36688 1.22810 1.23445 0.86642 0.79098 0.79827 0.82310 1.20240 1.21357 1.20363 1.60778 1.34498 1.29051 1.07375 1.21615 0.92555 0.95937 0.93010 0.92573 1.21802 1.00710 0.99803 0.96835 1.22062 0.96047 1.00598 0.97898 1.21252 0.90989 1.01792 0.99102 1.22372 0.94718 0.97323 1.01889 1.23013 1.03833 0.94344 1.01092 1.22958 0.99780 1.04289 0.95073 0.97601 0.90876 0.95044 0.92970 0.85065 0.94121 0.92444 0.93383 0.92462 0.92035 0.90277 0.92112 0.88239 0.88978 0.89439 0.89273 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.15 37.16 0.34 -2.71 16 2 C 0.21 5.39 2.48 -68.86 -0.17 5.22 16 3 H 0.00 0.08 7.40 -51.93 -0.38 -0.31 16 4 C -0.52 -14.23 8.58 -34.44 -0.30 -14.52 16 5 H 0.06 1.55 7.56 -52.49 -0.40 1.16 16 6 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 7 N -0.89 -25.57 11.42 55.43 0.63 -24.93 16 8 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.69 -14.61 5.98 -100.95 -0.60 -15.22 16 13 C 0.08 1.44 2.70 -67.71 -0.18 1.25 16 14 H 0.06 1.11 7.18 -51.93 -0.37 0.74 16 15 C -0.13 -2.13 9.53 37.16 0.35 -1.78 16 16 C -0.13 -1.95 4.45 -26.73 -0.12 -2.07 16 17 C -0.09 -1.51 5.36 -26.73 -0.14 -1.66 16 18 C -0.14 -1.98 5.74 -90.62 -0.52 -2.50 16 19 C -0.19 -2.30 10.18 -26.73 -0.27 -2.57 16 20 C -0.18 -2.42 10.25 -26.73 -0.27 -2.69 16 21 H 0.00 0.12 8.12 -51.93 -0.42 -0.30 16 22 H 0.07 2.00 6.31 -51.93 -0.33 1.67 16 23 H 0.03 0.79 8.13 -51.93 -0.42 0.37 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.33 6.96 6.63 -39.30 -0.26 6.70 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.91 8.12 -51.93 -0.42 0.48 16 31 H 0.08 1.48 7.15 -51.93 -0.37 1.11 16 32 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 33 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 34 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 297.84 15.07 4.49 4.49 Total: -1.00 -27.79 297.84 -8.60 -36.39 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.72 Total: 5.27 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -1.38 Total: -22.38 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.03 Total: -40.15 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.79 -8.60 -36.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308255198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.602 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds