Wall clock time and date at job start Mon Mar 30 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47430 * 2 1 4 4 C 1.50698 * 109.47418 * 239.99784 * 2 1 3 5 5 H 1.07998 * 120.00364 * 240.00514 * 4 2 1 6 6 C 1.37881 * 119.99817 * 60.27555 * 4 2 1 7 7 N 1.31507 * 119.99921 * 359.72752 * 6 4 2 8 8 Si 1.86801 * 119.99896 * 179.72398 * 6 4 2 9 9 H 1.48501 * 109.47201 * 60.00385 * 8 6 4 10 10 H 1.48500 * 109.47170 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47405 * 300.00405 * 8 6 4 12 12 N 1.46906 * 109.46986 * 120.00133 * 2 1 3 13 13 C 1.46903 * 110.99874 * 270.87308 * 12 2 1 14 14 H 1.09000 * 109.47186 * 2.62528 * 13 12 2 15 15 C 1.53003 * 109.47259 * 122.62378 * 13 12 2 16 16 C 1.52995 * 109.47239 * 242.62438 * 13 12 2 17 17 C 1.53006 * 109.47051 * 64.99755 * 16 13 12 18 18 C 1.52995 * 109.47051 * 179.97438 * 17 16 13 19 19 C 1.53005 * 117.50083 * 243.62218 * 18 17 16 20 20 C 1.53003 * 59.99949 * 252.51226 * 19 18 17 21 21 H 1.08996 * 109.47356 * 292.64103 * 1 2 3 22 22 H 1.08999 * 109.46836 * 52.63970 * 1 2 3 23 23 H 1.08997 * 109.47137 * 172.63822 * 1 2 3 24 24 H 0.97003 * 119.99969 * 179.97438 * 7 6 4 25 25 H 1.00893 * 111.00587 * 146.91796 * 12 2 1 26 26 H 1.08996 * 109.47265 * 188.07466 * 15 13 12 27 27 H 1.09001 * 109.46910 * 308.07649 * 15 13 12 28 28 H 1.09002 * 109.46795 * 68.06950 * 15 13 12 29 29 H 1.08997 * 109.47244 * 184.99700 * 16 13 12 30 30 H 1.08997 * 109.47135 * 305.00379 * 16 13 12 31 31 H 1.08997 * 109.47052 * 300.00063 * 17 16 13 32 32 H 1.08997 * 109.46642 * 60.00322 * 17 16 13 33 33 H 1.09002 * 115.55339 * 29.33396 * 18 17 16 34 34 H 1.09004 * 117.49490 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.49592 * 145.02081 * 19 18 17 36 36 H 1.08997 * 117.49546 * 252.50820 * 20 19 18 37 37 H 1.08999 * 117.49609 * 107.49193 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.7040 -0.2361 -2.4827 7 7 0.9480 0.8332 -2.6034 8 14 2.3331 -1.1122 -4.0078 9 1 1.8388 -2.5125 -4.0137 10 1 1.8431 -0.4087 -5.2204 11 1 3.8181 -1.1116 -4.0020 12 7 2.0197 -0.6926 1.1995 13 6 2.1754 0.2434 2.3210 14 1 1.8448 1.2358 2.0146 15 6 1.3302 -0.2331 3.5041 16 6 3.6468 0.3015 2.7362 17 6 4.4755 0.8954 1.5953 18 6 5.9468 0.9541 2.0106 19 6 6.5949 2.3357 2.1222 20 6 6.9601 1.4110 0.9592 21 1 -0.3634 0.3956 0.9484 22 1 -0.3633 0.6236 -0.8168 23 1 -0.3633 -1.0192 -0.1317 24 1 0.7173 1.1671 -3.4844 25 1 2.8843 -1.1768 1.0099 26 1 1.3308 0.5305 4.2819 27 1 0.3077 -0.4120 3.1713 28 1 1.7499 -1.1572 3.9016 29 1 3.7496 0.9264 3.6233 30 1 4.0020 -0.7049 2.9574 31 1 4.3727 0.2705 0.7081 32 1 4.1204 1.9018 1.3740 33 1 6.2665 0.1893 2.7185 34 1 5.9727 3.2027 1.9001 35 1 7.3408 2.4800 2.9038 36 1 7.9463 0.9472 0.9756 37 1 6.5784 1.6699 -0.0285 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308255198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:49 Heat of formation + Delta-G solvation = -15.114320 kcal Electronic energy + Delta-G solvation = -14460.299558 eV Core-core repulsion = 12236.757137 eV Total energy + Delta-G solvation = -2223.542421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30069 -37.85364 -35.41673 -32.93339 -30.80628 -28.94556 -27.16357 -24.97870 -23.23327 -22.11425 -21.41081 -21.11463 -18.41488 -16.97881 -16.53741 -16.00350 -15.94577 -15.07770 -14.74866 -14.67033 -14.11674 -13.57770 -13.33923 -13.13394 -12.80019 -12.68969 -12.51750 -12.43308 -12.31069 -12.23542 -12.15369 -11.91323 -11.74594 -11.42763 -11.00147 -10.81957 -10.71190 -10.55300 -8.94024 -8.12446 -6.25603 1.40651 1.42375 1.49797 2.41104 2.91455 3.16329 3.65640 3.70725 4.02349 4.05725 4.18156 4.28590 4.40863 4.65623 4.69711 4.76859 4.86170 4.87362 4.96770 5.01081 5.04558 5.07614 5.14861 5.23382 5.25394 5.29823 5.30537 5.47565 5.51124 5.57571 5.73580 5.91307 6.21919 6.54543 6.85387 7.09143 7.44716 8.93333 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021699 B = 0.009880 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.077715 B = 2833.461201 C = 3795.833707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.222 3.778 3 H -0.030 1.030 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.683 5.683 13 C 0.075 3.925 14 H 0.032 0.968 15 C -0.126 4.126 16 C -0.116 4.116 17 C -0.089 4.089 18 C -0.152 4.152 19 C -0.173 4.173 20 C -0.192 4.192 21 H 0.021 0.979 22 H 0.049 0.951 23 H 0.023 0.977 24 H 0.261 0.739 25 H 0.332 0.668 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.508 0.567 10.043 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 H -0.012 1.012 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.314 5.314 13 C -0.036 4.036 14 H 0.050 0.950 15 C -0.184 4.184 16 C -0.154 4.154 17 C -0.126 4.126 18 C -0.170 4.170 19 C -0.210 4.210 20 C -0.229 4.229 21 H 0.040 0.960 22 H 0.068 0.932 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.150 0.850 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.136 0.864 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.789 0.483 10.101 12.764 hybrid contribution 0.702 0.331 -1.540 1.725 sum 8.491 0.814 8.560 12.085 Atomic orbital electron populations 1.21525 0.98256 0.98990 0.97945 1.18919 0.92231 0.90635 0.86912 1.01201 1.21600 1.31597 1.12477 0.91793 0.92474 1.25708 0.95239 0.95644 1.01947 1.70038 1.37623 1.24029 1.24073 0.85622 0.78766 0.78737 0.78579 1.19657 1.20996 1.19599 1.60742 1.34661 1.29430 1.06604 1.21734 0.95181 0.94071 0.92574 0.94969 1.21727 0.99149 1.01247 0.96288 1.21955 0.93547 1.01760 0.98123 1.21120 0.93370 0.99859 0.98294 1.22332 0.92915 0.99032 1.02751 1.23084 1.03619 0.93231 1.01026 1.23012 1.00473 1.05020 0.94355 0.95958 0.93219 0.95730 0.92968 0.84984 0.91514 0.94098 0.92040 0.90046 0.90713 0.93702 0.94143 0.86389 0.89664 0.86892 0.87289 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 9.15 71.98 0.66 -4.97 16 2 C 0.22 11.51 2.48 44.17 0.11 11.62 16 3 H -0.03 -1.70 7.40 -2.39 -0.02 -1.72 16 4 C -0.54 -29.88 8.58 25.60 0.22 -29.66 16 5 H 0.06 3.11 7.56 -2.91 -0.02 3.09 16 6 C 0.01 0.78 5.31 84.66 0.45 1.23 16 7 N -0.92 -53.93 11.42 21.45 0.24 -53.68 16 8 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 N -0.68 -29.26 5.98 -473.30 -2.83 -32.09 16 13 C 0.07 2.65 2.70 44.91 0.12 2.77 16 14 H 0.03 1.30 7.18 -2.39 -0.02 1.28 16 15 C -0.13 -3.77 9.53 71.98 0.69 -3.08 16 16 C -0.12 -3.34 4.45 30.59 0.14 -3.21 16 17 C -0.09 -2.86 5.36 30.59 0.16 -2.70 16 18 C -0.15 -3.92 5.74 -10.79 -0.06 -3.98 16 19 C -0.17 -3.92 10.18 30.60 0.31 -3.60 16 20 C -0.19 -4.81 10.25 30.60 0.31 -4.49 16 21 H 0.02 1.02 8.12 -2.39 -0.02 1.00 16 22 H 0.05 2.79 6.31 -2.39 -0.02 2.77 16 23 H 0.02 1.25 8.13 -2.39 -0.02 1.23 16 24 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.33 14.00 6.63 -89.70 -0.59 13.41 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.67 8.13 -2.39 -0.02 1.66 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 31 H 0.04 1.74 7.15 -2.39 -0.02 1.72 16 32 H 0.04 1.43 7.87 -2.39 -0.02 1.41 16 33 H 0.12 2.62 8.07 -2.39 -0.02 2.60 16 34 H 0.08 2.05 8.03 -2.38 -0.02 2.03 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -60.03 297.84 2.96 -57.07 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.42 Total: 22.61 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 3.11 Total: -40.08 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.58 Total: -85.77 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.03 2.96 -57.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308255198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.951 kcal (2) G-P(sol) polarization free energy of solvation -60.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds