Wall clock time and date at job start Mon Mar 30 2020 03:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 112.84878 * 2 1 4 4 C 1.53775 * 113.61857 * 228.69415 * 2 1 3 5 5 C 1.53781 * 87.08517 * 220.01539 * 4 2 1 6 6 H 1.08995 * 113.68978 * 270.87497 * 5 4 2 7 7 N 1.46901 * 113.61391 * 139.97814 * 5 4 2 8 8 C 1.46902 * 110.99844 * 107.50480 * 7 5 4 9 9 C 1.52994 * 109.46988 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47119 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.53782 * 87.07905 * 25.43164 * 5 4 2 20 20 H 1.09001 * 113.61570 * 89.11464 * 19 5 4 21 21 C 1.52990 * 113.61660 * 219.93362 * 19 5 4 22 22 H 1.08995 * 109.47437 * 288.79984 * 1 2 3 23 23 H 1.08995 * 109.47433 * 48.80679 * 1 2 3 24 24 H 1.09011 * 109.46709 * 168.80231 * 1 2 3 25 25 H 1.09001 * 113.61391 * 105.46514 * 4 2 1 26 26 H 1.08997 * 113.61434 * 334.56996 * 4 2 1 27 27 H 1.00893 * 110.99878 * 343.55145 * 7 5 4 28 28 H 1.08998 * 109.46869 * 60.00380 * 8 7 5 29 29 H 1.08994 * 109.47040 * 300.00083 * 8 7 5 30 30 H 1.09004 * 109.46806 * 60.00264 * 9 8 7 31 31 H 1.09000 * 109.47828 * 300.00569 * 9 8 7 32 32 H 1.09004 * 109.47066 * 60.00422 * 10 9 8 33 33 H 1.08994 * 109.47405 * 300.00252 * 10 9 8 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.47007 * 60.00001 * 21 19 5 36 36 H 1.09002 * 109.47740 * 179.97438 * 21 19 5 37 37 H 1.08999 * 109.47508 * 300.00187 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1461 -0.9300 -1.0584 5 6 3.1924 -1.3135 0.0013 6 1 4.0717 -0.6694 0.0016 7 7 3.5321 -2.7427 0.0026 8 6 4.8751 -2.9651 -0.5495 9 6 5.1927 -4.4616 -0.5310 10 6 6.5917 -4.6932 -1.1055 11 6 6.9042 -6.1674 -1.0879 12 1 6.1775 -6.8690 -0.7056 13 6 8.1155 -6.6210 -1.5656 14 7 9.0002 -5.7667 -2.0314 15 14 8.4998 -8.4489 -1.5509 16 1 8.0495 -9.0598 -2.8274 17 1 9.9637 -8.6458 -1.3973 18 1 7.7918 -9.0946 -0.4164 19 6 2.1461 -0.9280 1.0603 20 1 1.4946 -1.7522 1.3507 21 6 2.7344 -0.1844 2.2609 22 1 -0.3634 0.3312 0.9728 23 1 -0.3634 0.6768 -0.7733 24 1 -0.3633 -1.0082 -0.1996 25 1 2.5650 -0.4006 -1.9141 26 1 1.4946 -1.7547 -1.3473 27 1 2.8411 -3.2790 -0.5001 28 1 5.6090 -2.4309 0.0539 29 1 4.9116 -2.5981 -1.5752 30 1 4.4588 -4.9962 -1.1342 31 1 5.1562 -4.8283 0.4948 32 1 7.3253 -4.1587 -0.5020 33 1 6.6286 -4.3266 -2.1312 34 1 9.8525 -6.0859 -2.3672 35 1 3.2081 0.7367 1.9213 36 1 1.9382 0.0554 2.9657 37 1 3.4762 -0.8150 2.7511 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308322822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:09 Heat of formation + Delta-G solvation = -13.922581 kcal Electronic energy + Delta-G solvation = -13758.390036 eV Core-core repulsion = 11534.899293 eV Total energy + Delta-G solvation = -2223.490743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.65124 -35.39448 -33.10472 -30.99047 -30.25713 -28.48761 -25.86855 -23.06414 -22.53323 -21.41911 -20.27168 -19.25408 -16.25642 -15.39671 -15.06343 -14.66024 -14.35810 -14.16292 -13.80509 -13.20185 -12.68403 -12.63762 -12.35830 -12.20420 -11.86275 -11.58143 -11.46629 -11.10074 -10.87024 -10.77373 -10.55398 -10.53053 -10.08438 -10.07101 -9.64987 -9.25666 -8.99516 -8.31176 -8.00744 -5.96423 -3.98323 3.34453 3.40413 3.44498 4.36230 4.49370 4.54303 4.57841 4.77390 5.01564 5.31576 5.39340 5.41659 5.44301 5.53807 5.63794 5.66635 5.79451 5.85497 5.89857 5.92316 5.97468 6.01542 6.14009 6.37446 6.38785 6.46615 6.77874 6.85701 7.18396 7.45623 7.70960 7.73340 7.88162 8.04383 8.47878 9.08967 9.65453 11.15091 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.070506 B = 0.004475 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.036146 B = 6255.487621 C = 6297.875293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.166 4.166 5 C 0.071 3.929 6 H 0.093 0.907 7 N -0.680 5.680 8 C 0.059 3.941 9 C -0.107 4.107 10 C 0.021 3.979 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.098 4.098 20 H 0.091 0.909 21 C -0.139 4.139 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.338 0.662 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 11.504 4.075 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.104 0.896 4 C -0.205 4.205 5 C -0.040 4.040 6 H 0.111 0.889 7 N -0.309 5.309 8 C -0.069 4.069 9 C -0.146 4.146 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.118 4.118 20 H 0.109 0.891 21 C -0.196 4.196 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.053 11.495 4.659 18.744 hybrid contribution 0.178 -0.811 -1.072 1.356 sum -13.876 10.683 3.587 17.876 Atomic orbital electron populations 1.21691 0.95020 1.01622 1.01300 1.22485 0.95364 0.98192 0.97088 0.89559 1.23737 0.99364 0.99906 0.97540 1.23081 0.95958 0.90097 0.94884 0.88937 1.60484 1.04707 1.06304 1.59443 1.22146 0.89025 0.99181 0.96594 1.21626 1.00001 0.91972 1.00952 1.19069 0.90079 0.96613 0.95852 1.21272 1.00867 0.92783 1.40738 0.92682 1.25035 0.96400 0.97672 0.95449 1.69972 1.07515 1.33879 1.42297 0.86593 0.77392 0.85638 0.78378 1.20722 1.21244 1.19844 1.22761 0.97352 0.97662 0.93978 0.89065 1.21678 1.00550 0.99773 0.97644 0.92717 0.93006 0.92680 0.91829 0.90030 0.84354 0.91619 0.95837 0.93740 0.92611 0.96589 0.96840 0.93066 0.93109 0.93154 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.71 37.16 0.36 -0.82 16 2 C -0.11 -1.09 3.91 -89.81 -0.35 -1.44 16 3 H 0.09 0.80 7.97 -51.93 -0.41 0.39 16 4 C -0.17 -1.82 7.25 -25.92 -0.19 -2.01 16 5 C 0.07 0.90 3.74 -66.90 -0.25 0.65 16 6 H 0.09 1.22 7.82 -51.93 -0.41 0.82 16 7 N -0.68 -10.27 6.62 -105.87 -0.70 -10.97 16 8 C 0.06 1.06 5.53 -3.83 -0.02 1.04 16 9 C -0.11 -2.30 5.41 -26.74 -0.14 -2.44 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 12 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 15 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 19 C -0.10 -1.08 3.71 -89.81 -0.33 -1.42 16 20 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 21 C -0.14 -1.44 9.71 37.15 0.36 -1.08 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.47 7.94 -51.92 -0.41 0.06 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.88 7.64 -51.93 -0.40 0.48 16 27 H 0.34 4.82 8.19 -39.30 -0.32 4.50 16 28 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.05 0.49 7.95 -51.93 -0.41 0.08 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -29.92 300.51 -8.55 -38.47 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.98 Total: -1.35 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.12 Total: -20.96 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.04 Total: -37.71 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.92 -8.55 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308322822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.550 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds