Wall clock time and date at job start Mon Mar 30 2020 03:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 112.84878 * 2 1 4 4 C 1.53775 * 113.61857 * 228.69415 * 2 1 3 5 5 C 1.53781 * 87.08517 * 220.01539 * 4 2 1 6 6 H 1.08995 * 113.68978 * 270.87497 * 5 4 2 7 7 N 1.46901 * 113.61391 * 139.97814 * 5 4 2 8 8 C 1.46902 * 110.99844 * 107.50480 * 7 5 4 9 9 C 1.52994 * 109.46988 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47119 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.53782 * 87.07905 * 25.43164 * 5 4 2 20 20 H 1.09001 * 113.61570 * 89.11464 * 19 5 4 21 21 C 1.52990 * 113.61660 * 219.93362 * 19 5 4 22 22 H 1.08995 * 109.47437 * 288.79984 * 1 2 3 23 23 H 1.08995 * 109.47433 * 48.80679 * 1 2 3 24 24 H 1.09011 * 109.46709 * 168.80231 * 1 2 3 25 25 H 1.09001 * 113.61391 * 105.46514 * 4 2 1 26 26 H 1.08997 * 113.61434 * 334.56996 * 4 2 1 27 27 H 1.00893 * 110.99878 * 343.55145 * 7 5 4 28 28 H 1.08998 * 109.46869 * 60.00380 * 8 7 5 29 29 H 1.08994 * 109.47040 * 300.00083 * 8 7 5 30 30 H 1.09004 * 109.46806 * 60.00264 * 9 8 7 31 31 H 1.09000 * 109.47828 * 300.00569 * 9 8 7 32 32 H 1.09004 * 109.47066 * 60.00422 * 10 9 8 33 33 H 1.08994 * 109.47405 * 300.00252 * 10 9 8 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.47007 * 60.00001 * 21 19 5 36 36 H 1.09002 * 109.47740 * 179.97438 * 21 19 5 37 37 H 1.08999 * 109.47508 * 300.00187 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1461 -0.9300 -1.0584 5 6 3.1924 -1.3135 0.0013 6 1 4.0717 -0.6694 0.0016 7 7 3.5321 -2.7427 0.0026 8 6 4.8751 -2.9651 -0.5495 9 6 5.1927 -4.4616 -0.5310 10 6 6.5917 -4.6932 -1.1055 11 6 6.9042 -6.1674 -1.0879 12 1 6.1775 -6.8690 -0.7056 13 6 8.1155 -6.6210 -1.5656 14 7 9.0002 -5.7667 -2.0314 15 14 8.4998 -8.4489 -1.5509 16 1 8.0495 -9.0598 -2.8274 17 1 9.9637 -8.6458 -1.3973 18 1 7.7918 -9.0946 -0.4164 19 6 2.1461 -0.9280 1.0603 20 1 1.4946 -1.7522 1.3507 21 6 2.7344 -0.1844 2.2609 22 1 -0.3634 0.3312 0.9728 23 1 -0.3634 0.6768 -0.7733 24 1 -0.3633 -1.0082 -0.1996 25 1 2.5650 -0.4006 -1.9141 26 1 1.4946 -1.7547 -1.3473 27 1 2.8411 -3.2790 -0.5001 28 1 5.6090 -2.4309 0.0539 29 1 4.9116 -2.5981 -1.5752 30 1 4.4588 -4.9962 -1.1342 31 1 5.1562 -4.8283 0.4948 32 1 7.3253 -4.1587 -0.5020 33 1 6.6286 -4.3266 -2.1312 34 1 9.8525 -6.0859 -2.3672 35 1 3.2081 0.7367 1.9213 36 1 1.9382 0.0554 2.9657 37 1 3.4762 -0.8150 2.7511 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308322822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:09 Heat of formation + Delta-G solvation = -31.642595 kcal Electronic energy + Delta-G solvation = -13759.158433 eV Core-core repulsion = 11534.899293 eV Total energy + Delta-G solvation = -2224.259141 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58574 -36.96095 -35.04726 -32.70664 -31.10191 -29.61561 -27.64137 -24.57437 -23.67340 -22.49748 -21.95314 -20.26858 -18.47233 -16.66677 -16.58452 -16.03677 -15.76733 -15.23453 -14.98848 -14.33154 -14.12789 -13.80771 -13.64788 -13.36430 -13.35650 -12.98684 -12.76660 -12.48266 -12.39752 -12.30785 -12.03703 -11.73029 -11.51640 -11.45296 -11.26604 -10.91950 -10.73068 -10.55914 -9.21931 -8.20611 -6.31936 1.39883 1.41631 1.53085 2.40991 3.12376 3.24909 3.66409 3.71546 3.88885 4.00861 4.24614 4.42291 4.51163 4.60205 4.64160 4.70058 4.72084 4.84089 4.89191 4.97016 5.01252 5.07720 5.10497 5.12735 5.23675 5.26880 5.35363 5.50993 5.54383 5.64029 5.74370 5.85001 6.16189 6.28429 6.53294 6.84909 7.37374 8.91451 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.070506 B = 0.004475 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.036146 B = 6255.487621 C = 6297.875293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 H 0.093 0.907 4 C -0.163 4.163 5 C 0.058 3.942 6 H 0.085 0.915 7 N -0.681 5.681 8 C 0.074 3.926 9 C -0.093 4.093 10 C 0.024 3.976 11 C -0.544 4.544 12 H 0.059 0.941 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.095 4.095 20 H 0.087 0.913 21 C -0.138 4.138 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.344 0.656 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.050 0.950 31 H 0.051 0.949 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.840 11.286 4.380 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.112 0.888 4 C -0.202 4.202 5 C -0.052 4.052 6 H 0.103 0.897 7 N -0.311 5.311 8 C -0.056 4.056 9 C -0.131 4.131 10 C -0.013 4.013 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.114 4.114 20 H 0.106 0.894 21 C -0.195 4.195 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.163 0.837 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.447 11.288 4.970 19.767 hybrid contribution 0.608 -0.697 -1.165 1.488 sum -14.839 10.591 3.805 18.624 Atomic orbital electron populations 1.21678 0.93806 1.01855 1.02103 1.22437 0.96298 0.97943 0.95362 0.88838 1.23710 0.98727 1.00344 0.97399 1.23237 0.96531 0.88332 0.97076 0.89665 1.60442 1.03315 1.08199 1.59162 1.21831 0.90735 0.96457 0.96539 1.21382 0.96935 0.94598 1.00150 1.18978 0.92587 0.95425 0.94327 1.21708 1.01446 0.94006 1.41069 0.92238 1.26015 0.96128 1.03070 0.94730 1.70104 1.08048 1.36382 1.42937 0.85414 0.77362 0.79123 0.78957 1.19646 1.20634 1.18747 1.22730 0.96581 0.97945 0.94125 0.89433 1.21669 1.00641 0.99632 0.97580 0.91938 0.92139 0.92827 0.91834 0.89694 0.83704 0.92383 0.96072 0.93107 0.93017 0.99106 0.99108 0.92741 0.92466 0.91748 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.71 71.98 0.70 -1.28 16 2 C -0.10 -1.75 3.91 -10.27 -0.04 -1.79 16 3 H 0.09 1.51 7.97 -2.39 -0.02 1.49 16 4 C -0.16 -3.31 7.25 31.12 0.23 -3.08 16 5 C 0.06 1.43 3.74 45.44 0.17 1.60 16 6 H 0.09 2.21 7.82 -2.39 -0.02 2.19 16 7 N -0.68 -20.10 6.62 -488.87 -3.24 -23.34 16 8 C 0.07 2.65 5.53 86.30 0.48 3.12 16 9 C -0.09 -3.99 5.41 30.59 0.17 -3.83 16 10 C 0.02 1.34 4.97 29.85 0.15 1.49 16 11 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 12 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 13 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 14 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 15 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 C -0.09 -1.93 3.71 -10.27 -0.04 -1.97 16 20 H 0.09 1.88 8.10 -2.39 -0.02 1.86 16 21 C -0.14 -2.64 9.71 71.98 0.70 -1.95 16 22 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.79 7.94 -2.38 -0.02 0.78 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.68 7.64 -2.39 -0.02 1.66 16 27 H 0.34 9.42 8.19 -89.70 -0.74 8.69 16 28 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.32 8.31 -92.70 -0.77 14.54 16 35 H 0.06 1.01 7.95 -2.38 -0.02 0.99 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -63.65 300.51 2.54 -61.11 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.27 Total: 11.96 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 3.20 Total: -39.06 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.95 Total: -81.08 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.65 2.54 -61.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308322822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.466 kcal (2) G-P(sol) polarization free energy of solvation -63.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds