Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46916 * 2 1 4 4 N 1.46503 * 109.46852 * 240.00154 * 2 1 3 5 5 C 1.36937 * 119.99847 * 188.02793 * 4 2 1 6 6 H 1.08001 * 120.00074 * 183.10346 * 5 4 2 7 7 C 1.38816 * 119.99819 * 3.11152 * 5 4 2 8 8 N 1.31612 * 120.00098 * 7.01179 * 7 5 4 9 9 Si 1.86807 * 119.99787 * 187.01449 * 7 5 4 10 10 H 1.48498 * 109.46771 * 89.99789 * 9 7 5 11 11 H 1.48501 * 109.46712 * 209.99604 * 9 7 5 12 12 H 1.48495 * 109.46936 * 329.99530 * 9 7 5 13 13 C 1.46493 * 120.00053 * 8.03463 * 4 2 1 14 14 C 1.53003 * 109.47335 * 96.69051 * 13 4 2 15 15 C 1.52998 * 112.85054 * 42.43219 * 14 13 4 16 16 C 1.53785 * 113.61414 * 271.12381 * 14 13 4 17 17 C 1.53779 * 87.07962 * 220.01873 * 16 14 13 18 18 C 1.53778 * 87.08504 * 25.43157 * 17 16 14 19 19 H 1.09003 * 109.47055 * 54.18428 * 1 2 3 20 20 H 1.08998 * 109.47295 * 174.18409 * 1 2 3 21 21 H 1.09001 * 109.46896 * 294.18263 * 1 2 3 22 22 H 1.08990 * 109.47356 * 120.00165 * 2 1 3 23 23 H 1.09003 * 109.47641 * 66.05807 * 3 2 1 24 24 H 1.09005 * 109.47142 * 186.05479 * 3 2 1 25 25 H 1.09005 * 109.47883 * 306.05583 * 3 2 1 26 26 H 0.97007 * 120.00437 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.46889 * 216.68697 * 13 4 2 28 28 H 1.08993 * 109.47346 * 336.68932 * 13 4 2 29 29 H 1.09003 * 109.47474 * 69.66620 * 15 14 13 30 30 H 1.09002 * 109.47379 * 189.67231 * 15 14 13 31 31 H 1.09005 * 109.46814 * 309.66551 * 15 14 13 32 32 H 1.08999 * 113.61044 * 334.56592 * 16 14 13 33 33 H 1.08995 * 113.61012 * 105.47050 * 16 14 13 34 34 H 1.09006 * 113.61694 * 270.88515 * 17 16 14 35 35 H 1.09000 * 113.61619 * 139.98626 * 17 16 14 36 36 H 1.09001 * 113.61700 * 220.02188 * 18 17 16 37 37 H 1.08997 * 113.61551 * 89.11271 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 3.3536 -0.9611 -1.3335 6 1 3.7205 -1.4250 -2.2372 7 6 4.2357 -0.6392 -0.3111 8 7 3.7754 -0.2027 0.8421 9 14 6.0760 -0.8254 -0.5720 10 1 6.6299 0.4418 -1.1130 11 1 6.7305 -1.1384 0.7237 12 1 6.3305 -1.9275 -1.5341 13 6 1.0780 -1.0916 -2.2456 14 6 1.0664 -0.0342 -3.3513 15 6 2.4667 0.4703 -3.7057 16 6 0.0451 1.0913 -3.1167 17 6 -0.2549 1.0262 -4.6235 18 6 0.2271 -0.4334 -4.5766 19 1 -0.3633 0.6014 -0.8334 20 1 -0.3634 -1.0223 -0.1041 21 1 -0.3633 0.4210 0.9375 22 1 1.8934 -0.5138 0.8899 23 1 1.7679 1.9241 0.9392 24 1 3.1246 1.4444 -0.1084 25 1 1.5908 1.9868 -0.8308 26 1 4.3917 0.0227 1.5565 27 1 1.3865 -2.0502 -2.6628 28 1 0.0783 -1.1848 -1.8214 29 1 3.0218 -0.3216 -4.2087 30 1 2.3855 1.3333 -4.3665 31 1 2.9904 0.7586 -2.7943 32 1 -0.7962 0.7939 -2.4907 33 1 0.4968 2.0319 -2.8017 34 1 0.3810 1.6769 -5.2239 35 1 -1.3133 1.1290 -4.8629 36 1 0.8257 -0.7235 -5.4401 37 1 -0.5644 -1.1475 -4.3497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308332224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = 51.971617 kcal Electronic energy + Delta-G solvation = -15589.517520 eV Core-core repulsion = 13368.884163 eV Total energy + Delta-G solvation = -2220.633356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.12787 -36.05196 -31.54392 -30.86067 -27.96459 -26.65820 -25.32274 -25.01359 -23.20614 -21.39734 -18.95647 -17.52731 -16.54413 -15.02635 -14.75054 -14.34462 -13.84506 -13.40724 -12.96793 -12.61242 -12.16548 -11.84108 -11.57140 -11.42443 -11.07569 -10.92681 -10.70664 -10.62743 -10.52089 -10.49313 -10.12485 -9.89572 -9.75217 -9.46284 -9.35599 -9.23639 -9.13642 -8.14627 -6.64654 -5.45210 -2.94929 3.43846 3.50584 3.51259 4.57617 5.16700 5.21532 5.26995 5.38900 5.58113 5.68796 6.02180 6.14287 6.14788 6.23494 6.29595 6.37698 6.46257 6.50677 6.54325 6.60115 6.69759 6.74086 6.89364 6.99743 7.04898 7.10673 7.16641 7.29236 7.48787 7.53313 7.78770 8.16886 8.27796 8.59510 9.42993 10.06286 10.48182 11.43533 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034201 B = 0.012388 C = 0.010340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.488072 B = 2259.745118 C = 2707.210680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.190 3.810 3 C -0.127 4.127 4 N -0.597 5.597 5 C -0.220 4.220 6 H 0.073 0.927 7 C -0.017 4.017 8 N -0.911 5.911 9 Si 0.902 3.098 10 H -0.292 1.292 11 H -0.294 1.294 12 H -0.284 1.284 13 C 0.157 3.843 14 C -0.092 4.092 15 C -0.119 4.119 16 C -0.127 4.127 17 C -0.143 4.143 18 C -0.138 4.138 19 H 0.048 0.952 20 H 0.041 0.959 21 H 0.040 0.960 22 H 0.103 0.897 23 H 0.014 0.986 24 H 0.083 0.917 25 H 0.003 0.997 26 H 0.246 0.754 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.026 0.974 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 1.417 -6.226 9.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.085 3.915 3 C -0.186 4.186 4 N -0.319 5.319 5 C -0.349 4.349 6 H 0.091 0.909 7 C -0.211 4.211 8 N -0.561 5.561 9 Si 0.733 3.267 10 H -0.219 1.219 11 H -0.220 1.220 12 H -0.209 1.209 13 C 0.030 3.970 14 C -0.095 4.095 15 C -0.176 4.176 16 C -0.164 4.164 17 C -0.181 4.181 18 C -0.176 4.176 19 H 0.067 0.933 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.120 0.880 23 H 0.033 0.967 24 H 0.101 0.899 25 H 0.022 0.978 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.302 1.427 -6.056 8.856 hybrid contribution 0.958 0.103 -0.222 0.988 sum -5.345 1.530 -6.278 8.386 Atomic orbital electron populations 1.22533 1.00714 0.99744 0.99982 1.20707 0.86677 0.92702 0.91388 1.22405 1.03943 0.96796 0.95421 1.44205 1.03436 1.66618 1.17593 1.19292 0.83041 1.32435 1.00164 0.90922 1.24699 0.97591 1.02608 0.96244 1.70163 1.31271 1.51268 1.03410 0.86255 0.86157 0.77587 0.76679 1.21926 1.22035 1.20949 1.20837 0.93766 0.94079 0.88356 1.22483 0.94244 0.97312 0.95465 1.21589 0.95306 0.98356 1.02304 1.23016 0.99099 0.99571 0.94743 1.22813 0.99708 0.97589 0.97956 1.23004 0.99698 0.95938 0.98970 0.93328 0.94031 0.94140 0.87965 0.96702 0.89862 0.97830 0.94231 0.94716 0.93156 0.93956 0.95470 0.88816 0.90669 0.92171 0.90986 0.92724 0.92484 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 7.85 37.16 0.29 -3.11 16 2 C 0.19 4.51 2.85 -67.93 -0.19 4.31 16 3 C -0.13 -3.02 8.46 37.16 0.31 -2.70 16 4 N -0.60 -14.24 2.24 -165.67 -0.37 -14.61 16 5 C -0.22 -5.73 7.08 -15.06 -0.11 -5.84 16 6 H 0.07 1.89 7.49 -52.49 -0.39 1.49 16 7 C -0.02 -0.46 4.55 -17.43 -0.08 -0.53 16 8 N -0.91 -25.21 7.67 55.49 0.43 -24.78 16 9 Si 0.90 21.74 29.56 -169.99 -5.02 16.72 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.16 3.20 4.97 -4.04 -0.02 3.18 16 14 C -0.09 -1.67 1.22 -153.69 -0.19 -1.86 16 15 C -0.12 -2.30 7.95 37.16 0.30 -2.01 16 16 C -0.13 -2.12 6.18 -25.92 -0.16 -2.28 16 17 C -0.14 -2.07 7.73 -25.92 -0.20 -2.27 16 18 C -0.14 -2.10 7.23 -25.92 -0.19 -2.29 16 19 H 0.05 0.90 4.55 -51.93 -0.24 0.67 16 20 H 0.04 0.79 6.99 -51.93 -0.36 0.43 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.10 2.79 5.99 -51.93 -0.31 2.48 16 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 2.23 5.42 -51.93 -0.28 1.95 16 25 H 0.00 0.06 7.59 -51.93 -0.39 -0.33 16 26 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.05 0.97 5.00 -51.93 -0.26 0.71 16 29 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.03 0.47 7.34 -51.93 -0.38 0.09 16 31 H 0.09 2.14 5.85 -51.93 -0.30 1.84 16 32 H 0.07 1.23 6.04 -51.93 -0.31 0.92 16 33 H 0.06 1.07 7.55 -51.93 -0.39 0.68 16 34 H 0.07 1.02 7.64 -51.93 -0.40 0.62 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 269.41 15.07 4.06 4.06 Total: -1.00 -26.45 269.41 -7.25 -33.71 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.11 Total: 0.31 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.23 Total: -15.40 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.05 Total: -39.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.45 -7.25 -33.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308332224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.677 kcal (2) G-P(sol) polarization free energy of solvation -26.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds