Wall clock time and date at job start Mon Mar 30 2020 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 N 1.46503 * 109.47366 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99753 * 265.50209 * 4 3 2 6 6 H 1.08005 * 119.99601 * 146.28613 * 5 4 3 7 7 C 1.38815 * 120.00150 * 326.29121 * 5 4 3 8 8 N 1.31614 * 119.99535 * 335.87381 * 7 5 4 9 9 Si 1.86796 * 119.99993 * 155.88221 * 7 5 4 10 10 H 1.48503 * 109.47243 * 89.99696 * 9 7 5 11 11 H 1.48501 * 109.47239 * 209.99628 * 9 7 5 12 12 H 1.48498 * 109.47238 * 330.00032 * 9 7 5 13 13 C 1.46493 * 120.00164 * 85.49918 * 4 3 2 14 14 H 1.09008 * 110.05759 * 352.44279 * 13 4 3 15 15 C 1.54265 * 110.03336 * 231.02268 * 13 4 3 16 16 C 1.54894 * 104.19694 * 217.10273 * 15 13 4 17 17 C 1.54892 * 102.74323 * 37.94544 * 16 15 13 18 18 C 1.53872 * 110.03397 * 113.85486 * 13 4 3 19 19 H 1.09000 * 110.07790 * 238.59248 * 18 13 4 20 20 C 1.53006 * 110.03258 * 0.02562 * 18 13 4 21 21 H 1.09007 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46898 * 299.99837 * 1 2 3 23 23 H 1.08998 * 109.47414 * 59.99526 * 1 2 3 24 24 H 1.09004 * 109.46898 * 240.00163 * 2 1 3 25 25 H 1.08998 * 109.47414 * 120.00474 * 2 1 3 26 26 H 1.09004 * 109.47154 * 60.00319 * 3 2 1 27 27 H 1.09007 * 109.47550 * 300.00272 * 3 2 1 28 28 H 0.97007 * 119.99391 * 180.02562 * 8 7 5 29 29 H 1.09003 * 110.48376 * 98.42655 * 15 13 4 30 30 H 1.08989 * 110.60191 * 335.84303 * 15 13 4 31 31 H 1.09001 * 110.75770 * 279.62962 * 16 15 13 32 32 H 1.09004 * 110.91126 * 156.33028 * 16 15 13 33 33 H 1.09006 * 110.47977 * 203.37762 * 17 16 15 34 34 H 1.08993 * 110.59998 * 80.79355 * 17 16 15 35 35 H 1.08993 * 109.47433 * 186.97299 * 20 18 13 36 36 H 1.09003 * 109.47092 * 66.96908 * 20 18 13 37 37 H 1.09001 * 109.46700 * 306.97667 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5354 1.1814 6 1 5.1340 1.0240 1.3000 7 6 3.6715 2.2867 2.2271 8 7 2.8240 3.2627 1.9791 9 14 4.1765 1.9125 3.9862 10 1 5.3782 2.7114 4.3368 11 1 3.0640 2.2624 4.9056 12 1 4.4887 0.4665 4.1146 13 6 4.2369 1.3432 -1.2657 14 1 3.5445 1.1438 -2.0836 15 6 5.2908 0.2199 -1.1797 16 6 6.4989 0.7705 -1.9775 17 6 6.5014 2.2728 -1.6004 18 6 5.0066 2.6485 -1.5332 19 1 4.6880 3.0833 -2.4806 20 6 4.7670 3.6412 -0.3939 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 2.4619 3.7879 2.7099 29 1 4.9135 -0.6931 -1.6404 30 1 5.5707 0.0352 -0.1427 31 1 6.3454 0.6414 -3.0489 32 1 7.4253 0.2912 -1.6609 33 1 7.0077 2.8580 -2.3681 34 1 6.9767 2.4241 -0.6313 35 1 5.2125 4.6024 -0.6497 36 1 5.2225 3.2615 0.5207 37 1 3.6951 3.7667 -0.2408 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308391964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:19 Heat of formation + Delta-G solvation = 4.391785 kcal Electronic energy + Delta-G solvation = -15385.405730 eV Core-core repulsion = 13162.709157 eV Total energy + Delta-G solvation = -2222.696573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.23676 -34.85892 -32.37882 -30.57150 -29.92037 -26.73930 -25.60073 -23.91934 -22.22799 -20.23538 -19.83769 -18.24187 -16.27464 -15.09201 -14.91576 -14.10116 -13.74804 -13.47250 -12.91483 -12.66468 -12.55049 -11.90595 -11.50487 -11.35444 -10.91727 -10.82694 -10.68462 -10.43015 -10.37190 -10.25783 -10.14548 -9.97927 -9.63240 -9.62235 -9.41669 -9.34202 -9.20195 -8.18508 -6.47786 -5.69810 -3.17731 3.39324 3.48002 3.51203 4.54643 5.31825 5.42828 5.48740 5.55151 5.76873 5.89078 5.97873 6.19478 6.23931 6.31496 6.36204 6.44189 6.54488 6.58730 6.60921 6.64947 6.71958 6.81524 6.90287 6.96588 7.07520 7.13808 7.22583 7.34312 7.37816 7.70515 7.83825 7.92550 8.25903 8.58934 9.30130 9.93659 10.50210 11.28971 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.015329 C = 0.011068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.610970 B = 1826.159233 C = 2529.153578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.146 3.854 4 N -0.578 5.578 5 C -0.236 4.236 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.172 3.828 14 H 0.045 0.955 15 C -0.133 4.133 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.107 4.107 19 H 0.040 0.960 20 C -0.121 4.121 21 H 0.038 0.962 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.017 0.983 28 H 0.252 0.748 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.063 0.937 35 H -0.002 1.002 36 H 0.081 0.919 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 -3.455 -5.339 6.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.020 3.980 4 N -0.297 5.297 5 C -0.366 4.366 6 H 0.079 0.921 7 C -0.194 4.194 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.064 3.936 14 H 0.063 0.937 15 C -0.172 4.172 16 C -0.161 4.161 17 C -0.152 4.152 18 C -0.128 4.128 19 H 0.059 0.941 20 C -0.178 4.178 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.017 0.983 36 H 0.100 0.900 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.184 -3.322 -5.214 6.295 hybrid contribution 0.255 -0.163 0.868 0.919 sum 1.439 -3.486 -4.346 5.754 Atomic orbital electron populations 1.21700 0.97728 0.99794 1.01031 1.22134 0.93514 1.01948 1.00455 1.20983 0.83575 0.91937 1.01513 1.43949 1.00614 1.84177 1.00916 1.18808 1.05359 1.23046 0.89349 0.92075 1.24921 1.00569 0.95395 0.98473 1.69987 1.34249 1.17963 1.30416 0.86551 0.77601 0.78228 0.85971 1.21582 1.21731 1.20653 1.21049 0.91985 0.91773 0.88753 0.93662 1.22759 0.95767 0.97950 1.00726 1.22418 0.98140 0.96656 0.98913 1.22385 0.97589 0.94975 1.00219 1.22205 0.93895 0.98559 0.98093 0.94107 1.21807 1.04599 0.93265 0.98168 0.94315 0.93128 0.93718 0.94299 0.92628 0.88464 0.96489 0.93805 0.93682 0.90406 0.92866 0.92993 0.93741 0.91865 0.98271 0.89988 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.08 16 2 C -0.14 -2.80 6.26 -26.73 -0.17 -2.97 16 3 C 0.15 3.35 5.16 -4.04 -0.02 3.33 16 4 N -0.58 -13.59 1.36 -164.39 -0.22 -13.81 16 5 C -0.24 -6.00 5.85 -15.06 -0.09 -6.09 16 6 H 0.06 1.59 6.30 -52.48 -0.33 1.26 16 7 C 0.01 0.15 4.25 -17.43 -0.07 0.07 16 8 N -0.88 -23.92 10.01 55.49 0.56 -23.36 16 9 Si 0.89 21.12 29.62 -169.99 -5.03 16.08 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.17 3.60 3.40 -66.82 -0.23 3.37 16 14 H 0.05 0.92 7.95 -51.92 -0.41 0.51 16 15 C -0.13 -2.52 6.38 -25.07 -0.16 -2.68 16 16 C -0.12 -2.04 6.91 -24.73 -0.17 -2.21 16 17 C -0.11 -2.05 6.36 -25.07 -0.16 -2.21 16 18 C -0.11 -2.18 3.47 -89.50 -0.31 -2.49 16 19 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 20 C -0.12 -2.81 7.37 37.16 0.27 -2.54 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.10 2.51 5.39 -51.93 -0.28 2.23 16 27 H 0.02 0.38 8.09 -51.92 -0.42 -0.04 16 28 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.63 5.93 -51.94 -0.31 1.32 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 35 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 36 H 0.08 2.08 5.25 -51.93 -0.27 1.81 16 37 H 0.08 2.13 6.23 -51.93 -0.32 1.80 16 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -25.69 278.38 -7.78 -33.47 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.53 Total: -0.09 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.74 Total: -16.48 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.33 Total: -37.17 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.69 -7.78 -33.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308391964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.859 kcal (2) G-P(sol) polarization free energy of solvation -25.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds