Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46867 * 2 1 4 4 N 1.46500 * 109.46639 * 180.02562 * 3 2 1 5 5 C 1.36944 * 120.00132 * 85.06102 * 4 3 2 6 6 H 1.08001 * 119.99773 * 209.78469 * 5 4 3 7 7 C 1.38805 * 119.99577 * 29.78840 * 5 4 3 8 8 N 1.31617 * 120.00364 * 40.66726 * 7 5 4 9 9 Si 1.86808 * 119.99659 * 220.66758 * 7 5 4 10 10 H 1.48502 * 109.47044 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46965 * 299.99607 * 9 7 5 12 12 H 1.48494 * 109.47031 * 59.99854 * 9 7 5 13 13 C 1.46504 * 120.00143 * 265.05506 * 4 3 2 14 14 H 1.08998 * 110.01374 * 0.06818 * 13 4 3 15 15 C 1.53876 * 110.03151 * 121.45675 * 13 4 3 16 16 C 1.54259 * 106.60042 * 119.28566 * 15 13 4 17 17 C 1.54892 * 104.19876 * 23.61109 * 16 15 13 18 18 H 1.09000 * 110.75031 * 80.36895 * 17 16 15 19 19 C 1.52993 * 110.76025 * 203.74362 * 17 16 15 20 20 C 1.54263 * 110.03650 * 238.62017 * 13 4 3 21 21 H 1.08997 * 109.47523 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47298 * 300.00043 * 1 2 3 23 23 H 1.08999 * 109.47189 * 59.99798 * 1 2 3 24 24 H 1.09004 * 109.46814 * 240.00155 * 2 1 3 25 25 H 1.08999 * 109.47189 * 120.00202 * 2 1 3 26 26 H 1.08995 * 109.47494 * 60.00485 * 3 2 1 27 27 H 1.09004 * 109.47350 * 299.99582 * 3 2 1 28 28 H 0.96995 * 120.00520 * 5.84198 * 8 7 5 29 29 H 1.09000 * 110.03294 * 238.57506 * 15 13 4 30 30 H 1.09008 * 110.03200 * 359.95498 * 15 13 4 31 31 H 1.09006 * 110.48913 * 142.29176 * 16 15 13 32 32 H 1.09005 * 110.49019 * 264.93543 * 16 15 13 33 33 H 1.08997 * 109.47283 * 58.54882 * 19 17 16 34 34 H 1.09004 * 109.47378 * 178.54631 * 19 17 16 35 35 H 1.09001 * 109.47161 * 298.53890 * 19 17 16 36 36 H 1.09001 * 110.48620 * 335.78918 * 20 13 4 37 37 H 1.09002 * 110.48183 * 98.42956 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1892 1.3405 -1.1825 6 1 5.1621 0.8722 -1.2044 7 6 3.6322 1.8390 -2.3520 8 7 2.9886 2.9871 -2.3373 9 14 3.7959 0.8805 -3.9470 10 1 3.1202 1.6221 -5.0419 11 1 5.2337 0.7120 -4.2779 12 1 3.1645 -0.4543 -3.7894 13 6 4.2380 1.5516 1.2631 14 1 3.5379 1.6223 2.0956 15 6 5.1549 0.3297 1.4478 16 6 6.5978 0.8695 1.5267 17 6 6.4295 2.3373 1.9919 18 1 6.2769 2.3857 3.0700 19 6 7.6365 3.1800 1.5751 20 6 5.1558 2.7912 1.2363 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 2.9757 3.5256 -1.5307 29 1 4.9004 -0.1921 2.3703 30 1 5.0539 -0.3448 0.5975 31 1 7.1779 0.3026 2.2550 32 1 7.0734 0.8321 0.5466 33 1 7.7487 3.1431 0.4915 34 1 7.4847 4.2126 1.8896 35 1 8.5359 2.7850 2.0473 36 1 5.3984 3.0641 0.2093 37 1 4.6834 3.6268 1.7527 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308400248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = -23.784380 kcal Electronic energy + Delta-G solvation = -15030.970489 eV Core-core repulsion = 12807.052106 eV Total energy + Delta-G solvation = -2223.918383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75170 -37.08022 -34.19509 -32.99878 -30.86380 -28.94873 -27.22247 -25.87651 -24.10847 -21.93020 -21.03744 -20.72122 -18.67861 -17.06447 -16.53379 -15.76989 -15.56211 -15.21235 -14.57702 -14.44078 -14.11588 -13.86030 -13.75333 -13.21266 -12.80979 -12.51503 -12.49604 -12.37049 -11.97088 -11.86507 -11.82714 -11.78131 -11.61506 -11.43050 -11.33045 -11.25499 -11.16523 -10.19474 -8.77042 -8.17113 -5.22170 1.56586 1.61989 1.81230 2.67986 3.13795 3.54417 3.81826 3.93340 4.13646 4.23215 4.39245 4.46535 4.61070 4.62036 4.71235 4.75918 4.77953 4.82636 4.87776 4.97657 5.00457 5.13895 5.18983 5.21974 5.23492 5.24789 5.36127 5.44007 5.52624 5.56567 5.66178 5.70153 6.11218 6.44744 7.20186 7.93932 8.38189 8.98123 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023780 B = 0.012402 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.160598 B = 2257.158168 C = 2906.475642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.141 3.859 4 N -0.600 5.600 5 C -0.340 4.340 6 H 0.038 0.962 7 C -0.059 4.059 8 N -0.912 5.912 9 Si 1.081 2.919 10 H -0.294 1.294 11 H -0.280 1.280 12 H -0.285 1.285 13 C 0.159 3.841 14 H 0.056 0.944 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.089 4.089 18 H 0.088 0.912 19 C -0.136 4.136 20 C -0.124 4.124 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.253 0.747 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -3.879 8.914 10.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.015 3.985 4 N -0.321 5.321 5 C -0.469 4.469 6 H 0.056 0.944 7 C -0.259 4.259 8 N -0.551 5.551 9 Si 0.908 3.092 10 H -0.221 1.221 11 H -0.206 1.206 12 H -0.212 1.212 13 C 0.053 3.947 14 H 0.075 0.925 15 C -0.166 4.166 16 C -0.145 4.145 17 C -0.107 4.107 18 H 0.106 0.894 19 C -0.194 4.194 20 C -0.163 4.163 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.360 -3.903 7.316 8.622 hybrid contribution 0.376 0.266 1.170 1.257 sum 2.736 -3.637 8.487 9.630 Atomic orbital electron populations 1.21659 0.94791 1.01856 1.01399 1.21847 0.95888 0.98643 1.00157 1.20918 0.83706 0.95075 0.98810 1.44346 1.00818 1.84885 1.02082 1.19525 1.04827 1.35390 0.87204 0.94446 1.26539 1.00382 0.95761 1.03255 1.70902 1.47034 1.08207 1.29003 0.83319 0.76521 0.75469 0.73937 1.22070 1.20648 1.21217 1.21288 0.92684 0.93295 0.87474 0.92534 1.22470 0.95619 0.98217 1.00276 1.22281 0.96142 0.95885 1.00164 1.22028 0.94284 0.94842 0.99573 0.89416 1.21697 0.97655 0.99653 1.00363 1.22763 0.96529 0.97895 0.99119 0.91586 0.92045 0.93964 0.94736 0.92888 0.94521 0.94500 0.93819 0.91435 0.93758 0.90231 0.93946 0.94645 0.92463 0.91041 0.94174 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.91 71.98 0.71 -3.80 16 2 C -0.13 -5.05 6.23 30.59 0.19 -4.86 16 3 C 0.14 6.56 5.18 86.38 0.45 7.01 16 4 N -0.60 -29.45 2.31 -674.02 -1.55 -31.00 16 5 C -0.34 -18.69 7.41 84.03 0.62 -18.07 16 6 H 0.04 2.16 7.39 -2.91 -0.02 2.13 16 7 C -0.06 -3.38 4.52 84.86 0.38 -2.99 16 8 N -0.91 -55.16 12.21 21.65 0.26 -54.89 16 9 Si 1.08 51.79 30.06 68.60 2.06 53.85 16 10 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 C 0.16 6.57 3.42 45.71 0.16 6.72 16 14 H 0.06 2.18 7.77 -2.39 -0.02 2.16 16 15 C -0.13 -4.64 6.12 31.32 0.19 -4.45 16 16 C -0.11 -3.45 6.28 31.67 0.20 -3.25 16 17 C -0.09 -2.74 3.50 -9.50 -0.03 -2.78 16 18 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 19 C -0.14 -3.82 9.27 71.98 0.67 -3.16 16 20 C -0.12 -4.92 5.86 31.67 0.19 -4.74 16 21 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.57 7.83 -2.39 -0.02 1.56 16 27 H 0.04 1.98 5.70 -2.39 -0.01 1.97 16 28 H 0.25 15.68 8.11 -92.71 -0.75 14.93 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.88 7.04 -2.38 -0.02 1.86 16 31 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.04 1.53 8.05 -2.38 -0.02 1.51 16 33 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.94 6.95 -2.39 -0.02 1.93 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -61.06 290.12 5.51 -55.55 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.01 Total: 10.86 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 3.72 Total: -34.36 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.29 Total: -85.89 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.06 Total: 53.85 kcal Total: -61.06 5.51 -55.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308400248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.766 kcal (2) G-P(sol) polarization free energy of solvation -61.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds