Wall clock time and date at job start Mon Mar 30 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 109.47304 * 2 1 4 4 C 1.50705 * 109.47384 * 120.00092 * 2 1 3 5 5 H 1.07991 * 120.00207 * 119.99808 * 4 2 1 6 6 C 1.37879 * 119.99584 * 300.00461 * 4 2 1 7 7 N 1.31515 * 119.99695 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00342 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46681 * 90.00281 * 8 6 4 10 10 H 1.48490 * 109.47043 * 210.00105 * 8 6 4 11 11 H 1.48501 * 109.46970 * 330.00562 * 8 6 4 12 12 N 1.46903 * 109.47675 * 240.00137 * 2 1 3 13 13 C 1.46901 * 110.99880 * 84.99764 * 12 2 1 14 14 H 1.09002 * 109.47401 * 325.00504 * 13 12 2 15 15 C 1.53000 * 109.46769 * 85.00797 * 13 12 2 16 16 C 1.53002 * 109.46860 * 205.00557 * 13 12 2 17 17 C 1.52997 * 109.47469 * 65.00222 * 16 13 12 18 18 C 1.53774 * 113.61403 * 272.49780 * 17 16 13 19 19 C 1.53783 * 87.08194 * 220.01388 * 18 17 16 20 20 C 1.53778 * 113.61592 * 174.99826 * 17 16 13 21 21 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47193 * 300.00374 * 1 2 3 23 23 H 1.09002 * 109.47159 * 59.99471 * 1 2 3 24 24 H 0.97002 * 120.00165 * 179.97438 * 7 6 4 25 25 H 1.00892 * 111.00423 * 208.95934 * 12 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 27 27 H 1.09001 * 109.47194 * 299.99524 * 15 13 12 28 28 H 1.08992 * 109.47399 * 59.99697 * 15 13 12 29 29 H 1.09008 * 109.46873 * 185.00316 * 16 13 12 30 30 H 1.08997 * 109.47047 * 305.00005 * 16 13 12 31 31 H 1.09009 * 112.84444 * 43.80319 * 17 16 13 32 32 H 1.09003 * 113.61441 * 334.56634 * 18 17 16 33 33 H 1.09005 * 113.61767 * 105.46541 * 18 17 16 34 34 H 1.08999 * 113.61762 * 270.88529 * 19 18 17 35 35 H 1.08997 * 113.61164 * 139.97917 * 19 18 17 36 36 H 1.09008 * 113.61277 * 254.52829 * 20 17 16 37 37 H 1.08999 * 113.61562 * 25.34800 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6256 1.2797 2.6542 9 1 -0.8022 0.8742 2.6994 10 1 0.9769 1.9952 3.9070 11 1 0.8488 2.1772 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2227 -2.3469 14 1 1.2576 0.9330 -2.2907 15 6 3.4112 0.9809 -2.3223 16 6 1.9771 -0.5796 -3.6454 17 6 0.5984 -1.2379 -3.7277 18 6 0.5314 -2.6144 -3.0455 19 6 -0.3420 -3.0698 -4.2266 20 6 0.3441 -1.9710 -5.0554 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.9031 -0.5281 4.4376 25 1 2.9173 -1.1205 -1.0287 26 1 3.4576 1.6603 -3.1734 27 1 3.4863 1.5525 -1.3972 28 1 4.2360 0.2706 -2.3784 29 1 2.1126 0.0876 -4.4967 30 1 2.7487 -1.3493 -3.6606 31 1 -0.2095 -0.5658 -3.4382 32 1 1.4940 -3.1230 -2.9927 33 1 0.0043 -2.6038 -2.0914 34 1 -1.4076 -2.8996 -4.0728 35 1 -0.1189 -4.0796 -4.5707 36 1 -0.3343 -1.4407 -5.7239 37 1 1.2556 -2.3023 -5.5528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379397550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:20 Heat of formation + Delta-G solvation = -12.229083 kcal Electronic energy + Delta-G solvation = -14750.059549 eV Core-core repulsion = 12526.642241 eV Total energy + Delta-G solvation = -2223.417307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.93671 -38.06565 -35.17594 -33.16925 -29.70820 -28.71300 -27.12907 -26.21500 -24.08979 -22.14145 -21.20342 -19.98736 -18.78155 -17.24637 -16.46266 -15.91102 -15.61965 -15.26450 -14.88467 -14.53023 -14.01836 -13.96065 -13.67665 -13.12299 -13.05511 -12.97308 -12.70663 -12.67358 -12.40514 -12.10095 -11.81653 -11.53829 -11.39626 -11.23147 -11.03878 -10.82807 -10.75644 -10.68718 -8.93632 -8.31016 -6.34235 1.29037 1.33074 1.43645 2.30039 3.04616 3.57675 3.81895 3.97403 4.01766 4.22773 4.27976 4.40784 4.56131 4.61754 4.72676 4.79978 4.84476 4.88550 4.95871 4.97825 5.05769 5.08410 5.14525 5.17820 5.23139 5.35055 5.39303 5.49870 5.55362 5.65819 5.69231 5.83922 6.07011 6.57970 6.73105 6.92721 7.32736 8.85561 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037217 B = 0.008575 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.154710 B = 3264.625562 C = 3513.265598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.189 3.811 3 H -0.008 1.008 4 C -0.518 4.518 5 H 0.040 0.960 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.298 1.298 11 H -0.253 1.253 12 N -0.664 5.664 13 C 0.078 3.922 14 H 0.062 0.938 15 C -0.175 4.175 16 C -0.086 4.086 17 C -0.095 4.095 18 C -0.119 4.119 19 C -0.146 4.146 20 C -0.129 4.129 21 H 0.048 0.952 22 H 0.026 0.974 23 H 0.052 0.948 24 H 0.265 0.735 25 H 0.331 0.669 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.171 2.027 -16.883 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.080 3.920 3 H 0.009 0.991 4 C -0.557 4.557 5 H 0.058 0.942 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.226 1.226 11 H -0.177 1.177 12 N -0.294 5.294 13 C -0.032 4.032 14 H 0.080 0.920 15 C -0.234 4.234 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.156 4.156 19 C -0.183 4.183 20 C -0.166 4.166 21 H 0.068 0.932 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.149 0.851 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.794 1.770 -16.878 17.390 hybrid contribution 0.481 0.935 1.259 1.641 sum -3.312 2.706 -15.619 16.194 Atomic orbital electron populations 1.21956 0.97722 1.00676 0.98380 1.19298 0.92345 0.92043 0.88357 0.99058 1.21436 1.31012 1.12467 0.90765 0.94212 1.25778 0.97277 0.99893 0.95466 1.70040 1.47761 1.42446 0.98556 0.85816 0.79201 0.80075 0.77029 1.19435 1.22632 1.17694 1.60584 1.32387 1.32320 1.04144 1.21727 0.96193 0.93353 0.91963 0.91969 1.22445 0.98571 1.00969 1.01426 1.21491 0.96719 0.98891 0.95271 1.22303 0.97073 0.95688 0.96292 1.22694 0.99354 0.96826 0.96763 1.22878 0.99150 0.98945 0.97356 1.22923 1.00730 0.97116 0.95830 0.93246 0.95514 0.92912 0.92568 0.85096 0.90620 0.94832 0.92414 0.90467 0.92191 0.90971 0.91337 0.93932 0.90600 0.91357 0.91078 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.88 71.98 0.64 -4.98 16 2 C 0.19 8.80 2.00 44.17 0.09 8.89 16 3 H -0.01 -0.39 6.17 -2.38 -0.01 -0.40 16 4 C -0.52 -29.57 9.17 25.60 0.23 -29.33 16 5 H 0.04 2.50 7.86 -2.92 -0.02 2.48 16 6 C 0.01 0.78 5.45 84.66 0.46 1.24 16 7 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 8 Si 0.95 45.81 24.37 68.60 1.67 47.48 16 9 H -0.27 -12.38 6.87 99.48 0.68 -11.70 16 10 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 11 H -0.25 -11.40 6.53 99.48 0.65 -10.75 16 12 N -0.66 -25.83 5.11 -473.29 -2.42 -28.25 16 13 C 0.08 2.41 2.39 44.92 0.11 2.52 16 14 H 0.06 2.01 7.11 -2.39 -0.02 1.99 16 15 C -0.18 -5.02 9.15 71.98 0.66 -4.36 16 16 C -0.09 -2.15 4.76 30.59 0.15 -2.00 16 17 C -0.10 -2.43 3.52 -10.27 -0.04 -2.46 16 18 C -0.12 -3.38 6.89 31.12 0.21 -3.17 16 19 C -0.15 -3.30 8.08 31.12 0.25 -3.05 16 20 C -0.13 -2.63 7.64 31.12 0.24 -2.39 16 21 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.03 1.19 3.27 -2.39 -0.01 1.18 16 23 H 0.05 1.96 7.43 -2.39 -0.02 1.94 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.33 13.51 7.96 -89.70 -0.71 12.79 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.03 1.10 7.43 -2.39 -0.02 1.08 16 28 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16 31 H 0.07 1.98 8.13 -2.38 -0.02 1.96 16 32 H 0.07 2.01 7.90 -2.39 -0.02 1.99 16 33 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -62.23 284.51 2.78 -59.45 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.23 Total: 19.74 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 3.00 Total: -39.10 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.12 Total: -87.57 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.48 kcal Total: -62.23 2.78 -59.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379397550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.225 kcal (2) G-P(sol) polarization free energy of solvation -62.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds