Wall clock time and date at job start Mon Mar 30 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47209 * 2 1 4 4 C 1.52997 * 109.47343 * 239.99239 * 2 1 3 5 5 C 1.52999 * 109.47177 * 175.00167 * 4 2 1 6 6 C 1.53780 * 113.61391 * 272.49589 * 5 4 2 7 7 C 1.53777 * 87.08494 * 220.02276 * 6 5 4 8 8 C 1.53782 * 113.61111 * 175.00093 * 5 4 2 9 9 N 1.46909 * 109.46895 * 119.99581 * 2 1 3 10 10 C 1.46903 * 110.99894 * 272.20811 * 9 2 1 11 11 H 1.08997 * 109.47019 * 341.95561 * 10 9 2 12 12 C 1.52996 * 109.47007 * 101.95406 * 10 9 2 13 13 C 1.50697 * 109.46952 * 221.95487 * 10 9 2 14 14 H 1.07991 * 120.00244 * 325.60339 * 13 10 9 15 15 C 1.37879 * 119.99917 * 145.60419 * 13 10 9 16 16 N 1.31513 * 119.99859 * 162.97414 * 15 13 10 17 17 Si 1.86807 * 120.00015 * 342.98160 * 15 13 10 18 18 H 1.48498 * 109.46884 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.46813 * 299.99783 * 17 15 13 20 20 H 1.48498 * 109.47249 * 59.99491 * 17 15 13 21 21 H 1.09001 * 109.47005 * 50.41783 * 1 2 3 22 22 H 1.09005 * 109.47368 * 170.42133 * 1 2 3 23 23 H 1.09002 * 109.47293 * 290.41913 * 1 2 3 24 24 H 1.09001 * 109.47208 * 295.00306 * 4 2 1 25 25 H 1.09003 * 109.46519 * 54.99780 * 4 2 1 26 26 H 1.08994 * 112.85005 * 43.80724 * 5 4 2 27 27 H 1.09006 * 113.61401 * 334.57133 * 6 5 4 28 28 H 1.08999 * 113.61158 * 105.47342 * 6 5 4 29 29 H 1.08999 * 113.61167 * 270.88973 * 7 6 5 30 30 H 1.08994 * 113.61980 * 139.98236 * 7 6 5 31 31 H 1.08991 * 113.61637 * 254.52589 * 8 5 4 32 32 H 1.09000 * 113.61398 * 25.34995 * 8 5 4 33 33 H 1.00897 * 110.99436 * 148.25861 * 9 2 1 34 34 H 1.09001 * 109.47322 * 173.76971 * 12 10 9 35 35 H 1.09008 * 109.47177 * 293.77099 * 12 10 9 36 36 H 1.09003 * 109.47550 * 53.76936 * 12 10 9 37 37 H 0.96997 * 120.00260 * 354.88877 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 6 4.0631 0.6561 -2.0239 7 6 5.1481 -0.2239 -2.6666 8 6 4.1905 -1.4112 -2.4698 9 7 2.0196 -0.6925 1.1996 10 6 2.1453 0.2375 2.3298 11 1 2.1595 1.2618 1.9576 12 6 0.9562 0.0548 3.2751 13 6 3.4257 -0.0449 3.0727 14 1 3.7906 -1.0580 3.1540 15 6 4.1312 0.9903 3.6486 16 7 5.0417 0.7368 4.5631 17 14 3.7937 2.7529 3.1300 18 1 4.6772 3.6710 3.8927 19 1 4.0612 2.9011 1.6769 20 1 2.3740 3.0876 3.4086 21 1 -0.3633 0.6548 -0.7920 22 1 -0.3634 -1.0134 -0.1710 23 1 -0.3634 0.3585 0.9631 24 1 1.7517 -1.7717 -1.2054 25 1 1.6053 -0.2619 -2.1369 26 1 4.0429 -0.7927 -0.3505 27 1 3.3502 1.0636 -2.7408 28 1 4.4589 1.4103 -1.3437 29 1 6.0599 -0.2956 -2.0737 30 1 5.3399 0.0135 -3.7129 31 1 4.6892 -2.3259 -2.1496 32 1 3.5120 -1.5701 -3.3080 33 1 2.8954 -1.1586 1.0158 34 1 1.1043 0.6635 4.1671 35 1 0.0406 0.3650 2.7714 36 1 0.8765 -0.9942 3.5603 37 1 5.1655 -0.1694 4.8861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379397553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:23 Heat of formation + Delta-G solvation = -5.062927 kcal Electronic energy + Delta-G solvation = -14746.582898 eV Core-core repulsion = 12523.476338 eV Total energy + Delta-G solvation = -2223.106560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.97185 -36.44739 -33.27045 -31.21644 -28.07654 -27.63982 -25.41985 -24.59562 -22.92685 -20.04513 -19.63100 -19.00483 -17.65036 -15.52129 -14.94933 -14.75147 -14.37987 -13.62805 -13.33233 -12.71048 -12.29196 -12.23364 -12.16811 -11.76468 -11.56964 -11.49625 -11.33272 -11.01515 -10.72019 -10.47365 -10.35643 -10.25467 -10.21548 -9.85664 -9.65514 -9.55993 -8.85928 -8.28153 -7.41544 -6.42762 -4.11094 3.38409 3.39729 3.58888 4.47509 4.78550 4.85003 4.93071 5.02222 5.16079 5.31516 5.53996 5.61246 5.73561 5.84415 5.86448 5.99662 6.02118 6.08323 6.13822 6.20881 6.29877 6.39915 6.42446 6.49808 6.59474 6.71729 6.77947 6.86067 6.97060 7.04019 7.53786 7.84680 8.20165 8.39268 8.66195 8.96188 9.59132 10.91241 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.010989 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.589639 B = 2547.389093 C = 3111.238163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.081 3.919 3 H 0.036 0.964 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.139 4.139 7 C -0.142 4.142 8 C -0.137 4.137 9 N -0.685 5.685 10 C 0.184 3.816 11 H 0.009 0.991 12 C -0.124 4.124 13 C -0.607 4.607 14 H 0.060 0.940 15 C 0.034 3.966 16 N -0.905 5.905 17 Si 1.044 2.956 18 H -0.285 1.285 19 H -0.285 1.285 20 H -0.283 1.283 21 H 0.041 0.959 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.339 0.661 34 H 0.040 0.960 35 H 0.021 0.979 36 H 0.044 0.956 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -0.712 -13.072 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.054 0.946 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.176 4.176 7 C -0.180 4.180 8 C -0.174 4.174 9 N -0.318 5.318 10 C 0.075 3.925 11 H 0.026 0.974 12 C -0.182 4.182 13 C -0.646 4.646 14 H 0.078 0.922 15 C -0.172 4.172 16 N -0.538 5.538 17 Si 0.872 3.128 18 H -0.211 1.211 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.494 0.629 -12.648 13.438 hybrid contribution 0.273 -1.079 -0.392 1.180 sum -4.221 -0.450 -13.040 13.714 Atomic orbital electron populations 1.21873 0.95935 1.00879 1.01034 1.21557 0.94897 0.96037 0.90504 0.94620 1.21746 0.94253 1.00978 0.97580 1.22632 0.95810 0.96234 0.98525 1.22963 0.98202 0.96999 0.99466 1.22793 0.97605 0.97251 1.00339 1.22922 0.98527 0.97285 0.98696 1.60819 1.35132 1.31630 1.04243 1.19552 0.94755 0.89858 0.88314 0.97373 1.21928 0.96939 1.00467 0.98881 1.22240 1.08200 0.96106 1.38016 0.92201 1.25772 0.93624 1.04412 0.93359 1.70821 1.34152 1.23666 1.25165 0.83914 0.76279 0.76287 0.76308 1.21083 1.21118 1.20958 0.93967 0.92923 0.92285 0.91513 0.92263 0.88432 0.90577 0.91538 0.90273 0.92050 0.91797 0.90588 0.84119 0.94137 0.96008 0.93683 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.49 37.16 0.35 -1.87 16 2 C 0.08 1.43 2.62 -67.71 -0.18 1.26 16 3 H 0.04 0.70 7.28 -51.93 -0.38 0.32 16 4 C -0.11 -1.60 4.61 -26.73 -0.12 -1.72 16 5 C -0.11 -1.71 3.47 -89.81 -0.31 -2.02 16 6 C -0.14 -1.97 7.63 -25.92 -0.20 -2.16 16 7 C -0.14 -1.79 8.08 -25.92 -0.21 -2.00 16 8 C -0.14 -1.73 7.64 -25.91 -0.20 -1.92 16 9 N -0.68 -14.41 6.21 -100.95 -0.63 -15.04 16 10 C 0.18 4.44 2.48 -68.87 -0.17 4.27 16 11 H 0.01 0.21 4.38 -51.93 -0.23 -0.02 16 12 C -0.12 -2.82 9.38 37.16 0.35 -2.47 16 13 C -0.61 -16.97 8.49 -34.44 -0.29 -17.26 16 14 H 0.06 1.81 8.06 -52.49 -0.42 1.39 16 15 C 0.03 0.99 5.47 -17.82 -0.10 0.89 16 16 N -0.90 -27.73 13.70 55.43 0.76 -26.97 16 17 Si 1.04 25.63 27.24 -169.99 -4.63 21.00 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 23 H 0.06 1.01 5.93 -51.93 -0.31 0.71 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.78 7.84 -51.93 -0.41 0.38 16 26 H 0.10 1.73 6.46 -51.93 -0.34 1.39 16 27 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.34 7.29 5.88 -39.29 -0.23 7.06 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.43 6.16 -51.92 -0.32 0.11 16 36 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.27 8.21 8.73 -40.82 -0.36 7.86 16 LS Contribution 287.80 15.07 4.34 4.34 Total: -1.00 -28.90 287.80 -7.65 -36.56 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.42 Total: 5.14 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -1.08 Total: -25.02 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.13 Total: -42.01 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.63 Total: 21.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.90 -7.65 -36.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379397553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.494 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds