Wall clock time and date at job start Mon Mar 30 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47209 * 2 1 4 4 C 1.52997 * 109.47343 * 239.99239 * 2 1 3 5 5 C 1.52999 * 109.47177 * 175.00167 * 4 2 1 6 6 C 1.53780 * 113.61391 * 272.49589 * 5 4 2 7 7 C 1.53777 * 87.08494 * 220.02276 * 6 5 4 8 8 C 1.53782 * 113.61111 * 175.00093 * 5 4 2 9 9 N 1.46909 * 109.46895 * 119.99581 * 2 1 3 10 10 C 1.46903 * 110.99894 * 272.20811 * 9 2 1 11 11 H 1.08997 * 109.47019 * 341.95561 * 10 9 2 12 12 C 1.52996 * 109.47007 * 101.95406 * 10 9 2 13 13 C 1.50697 * 109.46952 * 221.95487 * 10 9 2 14 14 H 1.07991 * 120.00244 * 325.60339 * 13 10 9 15 15 C 1.37879 * 119.99917 * 145.60419 * 13 10 9 16 16 N 1.31513 * 119.99859 * 162.97414 * 15 13 10 17 17 Si 1.86807 * 120.00015 * 342.98160 * 15 13 10 18 18 H 1.48498 * 109.46884 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.46813 * 299.99783 * 17 15 13 20 20 H 1.48498 * 109.47249 * 59.99491 * 17 15 13 21 21 H 1.09001 * 109.47005 * 50.41783 * 1 2 3 22 22 H 1.09005 * 109.47368 * 170.42133 * 1 2 3 23 23 H 1.09002 * 109.47293 * 290.41913 * 1 2 3 24 24 H 1.09001 * 109.47208 * 295.00306 * 4 2 1 25 25 H 1.09003 * 109.46519 * 54.99780 * 4 2 1 26 26 H 1.08994 * 112.85005 * 43.80724 * 5 4 2 27 27 H 1.09006 * 113.61401 * 334.57133 * 6 5 4 28 28 H 1.08999 * 113.61158 * 105.47342 * 6 5 4 29 29 H 1.08999 * 113.61167 * 270.88973 * 7 6 5 30 30 H 1.08994 * 113.61980 * 139.98236 * 7 6 5 31 31 H 1.08991 * 113.61637 * 254.52589 * 8 5 4 32 32 H 1.09000 * 113.61398 * 25.34995 * 8 5 4 33 33 H 1.00897 * 110.99436 * 148.25861 * 9 2 1 34 34 H 1.09001 * 109.47322 * 173.76971 * 12 10 9 35 35 H 1.09008 * 109.47177 * 293.77099 * 12 10 9 36 36 H 1.09003 * 109.47550 * 53.76936 * 12 10 9 37 37 H 0.96997 * 120.00260 * 354.88877 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 6 4.0631 0.6561 -2.0239 7 6 5.1481 -0.2239 -2.6666 8 6 4.1905 -1.4112 -2.4698 9 7 2.0196 -0.6925 1.1996 10 6 2.1453 0.2375 2.3298 11 1 2.1595 1.2618 1.9576 12 6 0.9562 0.0548 3.2751 13 6 3.4257 -0.0449 3.0727 14 1 3.7906 -1.0580 3.1540 15 6 4.1312 0.9903 3.6486 16 7 5.0417 0.7368 4.5631 17 14 3.7937 2.7529 3.1300 18 1 4.6772 3.6710 3.8927 19 1 4.0612 2.9011 1.6769 20 1 2.3740 3.0876 3.4086 21 1 -0.3633 0.6548 -0.7920 22 1 -0.3634 -1.0134 -0.1710 23 1 -0.3634 0.3585 0.9631 24 1 1.7517 -1.7717 -1.2054 25 1 1.6053 -0.2619 -2.1369 26 1 4.0429 -0.7927 -0.3505 27 1 3.3502 1.0636 -2.7408 28 1 4.4589 1.4103 -1.3437 29 1 6.0599 -0.2956 -2.0737 30 1 5.3399 0.0135 -3.7129 31 1 4.6892 -2.3259 -2.1496 32 1 3.5120 -1.5701 -3.3080 33 1 2.8954 -1.1586 1.0158 34 1 1.1043 0.6635 4.1671 35 1 0.0406 0.3650 2.7714 36 1 0.8765 -0.9942 3.5603 37 1 5.1655 -0.1694 4.8861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379397553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:23 Heat of formation + Delta-G solvation = -22.802137 kcal Electronic energy + Delta-G solvation = -14747.352128 eV Core-core repulsion = 12523.476338 eV Total energy + Delta-G solvation = -2223.875790 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15277 -38.02494 -35.19449 -33.10732 -29.39341 -29.20403 -26.73069 -26.47131 -24.08975 -21.72347 -21.26958 -20.17554 -19.77356 -16.79567 -16.54678 -16.16340 -15.84499 -15.36223 -15.04361 -14.12438 -13.85450 -13.79559 -13.37439 -13.27677 -13.19063 -12.99145 -12.69482 -12.57722 -12.31164 -12.19720 -11.94829 -11.79074 -11.53359 -11.35663 -11.02504 -10.97587 -10.77495 -10.47916 -9.19077 -8.67779 -6.42231 1.38848 1.44538 1.64889 2.42111 2.99358 3.55468 3.71134 3.80145 3.84055 3.99001 4.28010 4.37794 4.46364 4.58482 4.69056 4.83899 4.85364 4.86628 4.89942 4.95275 4.97772 5.00788 5.05947 5.10389 5.14939 5.27307 5.28044 5.47367 5.51339 5.64490 5.67559 5.83824 6.00313 6.31748 6.73694 6.88202 7.36571 8.58902 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.010989 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.589639 B = 2547.389093 C = 3111.238163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 H 0.020 0.980 4 C -0.097 4.097 5 C -0.125 4.125 6 C -0.140 4.140 7 C -0.139 4.139 8 C -0.125 4.125 9 N -0.685 5.685 10 C 0.186 3.814 11 H 0.009 0.991 12 C -0.119 4.119 13 C -0.605 4.605 14 H 0.022 0.978 15 C -0.016 4.016 16 N -0.936 5.936 17 Si 1.083 2.917 18 H -0.285 1.285 19 H -0.267 1.267 20 H -0.261 1.261 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.332 0.668 34 H 0.029 0.971 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.069 0.082 -15.645 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.036 4.036 3 H 0.038 0.962 4 C -0.135 4.135 5 C -0.144 4.144 6 C -0.178 4.178 7 C -0.176 4.176 8 C -0.163 4.163 9 N -0.317 5.317 10 C 0.076 3.924 11 H 0.027 0.973 12 C -0.177 4.177 13 C -0.644 4.644 14 H 0.040 0.960 15 C -0.215 4.215 16 N -0.571 5.571 17 Si 0.905 3.095 18 H -0.211 1.211 19 H -0.193 1.193 20 H -0.185 1.185 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.198 1.401 -15.234 16.506 hybrid contribution 0.802 -1.419 0.398 1.678 sum -5.396 -0.018 -14.837 15.787 Atomic orbital electron populations 1.21832 0.94015 1.02057 1.01327 1.21730 0.96329 0.95175 0.90320 0.96157 1.21683 0.93857 1.00973 0.96982 1.22596 0.96074 0.97965 0.97784 1.23018 0.99194 0.96113 0.99442 1.22773 0.96794 0.96699 1.01365 1.22898 0.98436 0.96892 0.98035 1.60812 1.34661 1.31124 1.05144 1.19455 0.93166 0.90462 0.89289 0.97336 1.21835 0.97637 0.99929 0.98336 1.22408 1.09875 0.94247 1.37843 0.95979 1.27123 0.93100 1.08485 0.92819 1.70939 1.36194 1.22730 1.27252 0.83410 0.77411 0.71735 0.76912 1.21104 1.19261 1.18532 0.91182 0.92101 0.93680 0.91197 0.89526 0.92197 0.88475 0.93975 0.91419 0.89727 0.91937 0.88289 0.84891 0.95222 0.93045 0.94366 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 9.49 71.98 0.68 -3.16 16 2 C 0.07 2.50 2.62 44.91 0.12 2.61 16 3 H 0.02 0.76 7.28 -2.39 -0.02 0.74 16 4 C -0.10 -2.63 4.61 30.59 0.14 -2.49 16 5 C -0.13 -3.62 3.47 -10.27 -0.04 -3.65 16 6 C -0.14 -3.72 7.63 31.12 0.24 -3.48 16 7 C -0.14 -3.21 8.08 31.12 0.25 -2.96 16 8 C -0.13 -2.86 7.64 31.12 0.24 -2.62 16 9 N -0.68 -28.52 6.21 -473.31 -2.94 -31.46 16 10 C 0.19 8.91 2.48 44.17 0.11 9.02 16 11 H 0.01 0.43 4.38 -2.39 -0.01 0.42 16 12 C -0.12 -5.31 9.38 71.98 0.68 -4.63 16 13 C -0.61 -34.78 8.49 25.60 0.22 -34.57 16 14 H 0.02 1.40 8.06 -2.92 -0.02 1.37 16 15 C -0.02 -0.95 5.47 84.66 0.46 -0.48 16 16 N -0.94 -59.22 13.70 21.45 0.29 -58.93 16 17 Si 1.08 51.44 27.24 68.60 1.87 53.31 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 1.64 8.12 -2.38 -0.02 1.62 16 23 H 0.04 1.40 5.93 -2.39 -0.01 1.39 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 1.90 7.84 -2.39 -0.02 1.89 16 26 H 0.06 2.18 6.46 -2.39 -0.02 2.16 16 27 H 0.10 2.15 7.90 -2.38 -0.02 2.13 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 33 H 0.33 14.59 5.88 -89.70 -0.53 14.06 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.97 6.16 -2.38 -0.01 1.96 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 Total: -1.00 -63.45 287.80 2.78 -60.67 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.46 Total: 22.83 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 3.10 Total: -46.41 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -2.65 Total: -90.39 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 1.87 Total: 53.31 kcal Total: -63.45 2.78 -60.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379397553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.864 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds