Wall clock time and date at job start Mon Mar 30 2020 03:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47151 * 2 1 4 4 C 1.53004 * 109.46841 * 119.99352 * 2 1 3 5 5 C 1.52997 * 109.46955 * 185.00174 * 4 2 1 6 6 C 1.53784 * 113.61270 * 272.49663 * 5 4 2 7 7 C 1.53779 * 87.08045 * 220.02125 * 6 5 4 8 8 C 1.53779 * 87.08402 * 25.43458 * 7 6 5 9 9 N 1.46895 * 109.47284 * 239.99296 * 2 1 3 10 10 C 1.46907 * 110.99993 * 306.04760 * 9 2 1 11 11 C 1.46897 * 110.99796 * 70.00072 * 9 2 1 12 12 C 1.50700 * 109.46967 * 170.00029 * 11 9 2 13 13 H 1.08000 * 120.00077 * 359.97438 * 12 11 9 14 14 C 1.37888 * 120.00266 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99331 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00259 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47190 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47343 * 119.99778 * 16 14 12 19 19 H 1.48495 * 109.46873 * 239.99869 * 16 14 12 20 20 H 1.08999 * 109.47794 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47429 * 300.00993 * 1 2 3 22 22 H 1.09000 * 109.47161 * 60.00495 * 1 2 3 23 23 H 1.08998 * 109.46831 * 64.99902 * 4 2 1 24 24 H 1.09003 * 109.46913 * 304.99987 * 4 2 1 25 25 H 1.08994 * 112.91116 * 43.75034 * 5 4 2 26 26 H 1.09002 * 113.61478 * 334.57090 * 6 5 4 27 27 H 1.09004 * 113.61162 * 105.47268 * 6 5 4 28 28 H 1.09006 * 113.61307 * 270.88660 * 7 6 5 29 29 H 1.09007 * 113.61642 * 139.98417 * 7 6 5 30 30 H 1.08997 * 113.61646 * 220.02209 * 8 7 6 31 31 H 1.08998 * 113.69354 * 89.12517 * 8 7 6 32 32 H 1.09003 * 109.46778 * 59.99900 * 10 9 2 33 33 H 1.09003 * 109.46630 * 179.97438 * 10 9 2 34 34 H 1.09000 * 109.47140 * 300.00133 * 10 9 2 35 35 H 1.08998 * 109.47378 * 290.00154 * 11 9 2 36 36 H 1.09004 * 109.46984 * 50.00277 * 11 9 2 37 37 H 0.97000 * 119.99660 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5647 -0.6131 1.3139 6 6 4.2943 -1.7316 0.5511 7 6 5.2971 -1.7645 1.7164 8 6 4.1702 -1.2023 2.5989 9 7 2.0197 -0.6926 -1.1993 10 6 1.4343 -2.0357 -1.3075 11 6 1.7529 0.0970 -2.4089 12 6 2.4775 -0.5166 -3.5792 13 1 3.0765 -1.4042 -3.4384 14 6 2.3764 0.0556 -4.8297 15 7 1.6473 1.1366 -5.0010 16 14 3.2739 -0.7054 -6.2804 17 1 4.0191 -1.9071 -5.8264 18 1 2.2898 -1.0967 -7.3214 19 1 4.2268 0.2828 -6.8466 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.7515 -1.7714 1.2058 24 1 1.6052 -0.2615 2.1370 25 1 3.9297 0.3863 1.0777 26 1 3.7094 -2.6461 0.4524 27 1 4.7314 -1.4036 -0.3921 28 1 6.1357 -1.0796 1.5902 29 1 5.6095 -2.7708 1.9955 30 1 4.5071 -0.4471 3.3089 31 1 3.5507 -1.9711 3.0608 32 1 0.3490 -1.9550 -1.3691 33 1 1.8133 -2.5260 -2.2042 34 1 1.7058 -2.6222 -0.4298 35 1 0.6814 0.1051 -2.6087 36 1 2.1026 1.1187 -2.2603 37 1 1.5765 1.5394 -5.8806 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379413107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:11 Heat of formation + Delta-G solvation = 9.185129 kcal Electronic energy + Delta-G solvation = -14747.288432 eV Core-core repulsion = 12524.799715 eV Total energy + Delta-G solvation = -2222.488718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.93165 -36.87605 -32.86585 -30.91545 -27.87063 -27.04831 -25.16126 -25.03192 -23.02394 -21.39057 -18.98698 -18.71481 -16.37195 -15.33948 -15.09824 -14.55274 -14.34004 -13.65779 -13.46215 -12.77982 -12.43910 -12.12228 -12.02960 -11.92900 -11.60740 -11.27582 -11.09475 -10.85451 -10.79144 -10.43790 -10.41456 -10.18853 -10.03996 -9.77847 -9.64007 -9.51594 -9.09415 -8.38874 -7.03871 -5.98207 -3.98570 3.32977 3.40399 3.45299 4.46291 4.92626 4.99804 5.08490 5.13698 5.35817 5.38381 5.51900 5.71377 5.86168 5.92036 6.02855 6.05599 6.06361 6.16605 6.19582 6.25280 6.33148 6.38367 6.47132 6.60584 6.68415 6.73900 6.84162 6.85357 6.99101 7.40621 7.46956 7.87626 8.18583 8.32356 8.66164 9.10261 9.65343 11.12740 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.008505 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.903061 B = 3291.513253 C = 3822.796104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.072 0.928 4 C -0.098 4.098 5 C -0.091 4.091 6 C -0.113 4.113 7 C -0.150 4.150 8 C -0.143 4.143 9 N -0.525 5.525 10 C 0.033 3.967 11 C 0.192 3.808 12 C -0.502 4.502 13 H 0.063 0.937 14 C 0.053 3.947 15 N -0.900 5.900 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.285 1.285 20 H 0.053 0.947 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.013 0.987 33 H 0.069 0.931 34 H 0.045 0.955 35 H -0.009 1.009 36 H 0.026 0.974 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 -4.305 12.290 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.109 4.109 6 C -0.151 4.151 7 C -0.188 4.188 8 C -0.180 4.180 9 N -0.248 5.248 10 C -0.116 4.116 11 C 0.067 3.933 12 C -0.541 4.541 13 H 0.081 0.919 14 C -0.148 4.148 15 N -0.540 5.540 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.009 0.991 36 H 0.044 0.956 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.264 -4.233 12.188 13.099 hybrid contribution -0.544 -0.138 -1.002 1.148 sum 1.719 -4.372 11.186 12.133 Atomic orbital electron populations 1.22464 0.98891 1.01538 1.01442 1.21696 0.91626 0.98117 0.91637 0.91025 1.21615 0.95031 1.00418 0.96550 1.22303 0.94583 0.99100 0.94956 1.22741 0.96549 0.98412 0.97358 1.22889 0.97109 1.00307 0.98465 1.23000 0.98201 1.00069 0.96760 1.62294 1.57036 1.02555 1.02942 1.22280 0.96223 0.92132 1.00918 1.19712 0.94752 0.93121 0.85734 1.21235 1.28892 1.11787 0.92161 0.91881 1.24994 0.95708 0.95124 0.98935 1.69974 1.40351 1.20649 1.23047 0.86483 0.79480 0.79257 0.82450 1.19691 1.21216 1.21102 0.92780 0.93476 0.92273 0.92180 0.92798 0.89791 0.90872 0.90724 0.90808 0.92436 0.92473 0.90856 0.96891 0.91192 0.93645 0.99143 0.95584 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.44 37.16 0.31 -2.79 16 2 C 0.08 1.41 2.30 -67.71 -0.16 1.25 16 3 H 0.07 1.35 7.93 -51.93 -0.41 0.93 16 4 C -0.10 -1.46 4.47 -26.73 -0.12 -1.57 16 5 C -0.09 -1.33 3.52 -89.80 -0.32 -1.64 16 6 C -0.11 -1.72 6.89 -25.92 -0.18 -1.89 16 7 C -0.15 -1.91 8.08 -25.92 -0.21 -2.12 16 8 C -0.14 -1.75 7.64 -25.92 -0.20 -1.95 16 9 N -0.52 -11.04 3.76 -236.33 -0.89 -11.93 16 10 C 0.03 0.64 8.60 60.07 0.52 1.16 16 11 C 0.19 5.00 4.29 -4.98 -0.02 4.97 16 12 C -0.50 -14.13 8.46 -34.44 -0.29 -14.42 16 13 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 14 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 16 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H 0.05 0.88 6.33 -51.93 -0.33 0.55 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 1.12 6.91 -51.93 -0.36 0.76 16 23 H 0.06 0.89 6.04 -51.93 -0.31 0.57 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 26 H 0.07 1.11 7.10 -51.93 -0.37 0.75 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.01 0.25 6.21 -51.93 -0.32 -0.07 16 33 H 0.07 1.48 6.76 -51.93 -0.35 1.12 16 34 H 0.04 0.76 5.58 -51.93 -0.29 0.47 16 35 H -0.01 -0.26 7.06 -51.93 -0.37 -0.62 16 36 H 0.03 0.73 7.93 -51.93 -0.41 0.32 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 284.42 15.07 4.29 4.29 Total: -1.00 -28.88 284.42 -8.06 -36.94 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.41 Total: -2.24 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.76 Total: -17.59 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.15 Total: -38.23 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.88 -8.06 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379413107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.123 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds