Wall clock time and date at job start Mon Mar 30 2020 03:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47151 * 2 1 4 4 C 1.53004 * 109.46841 * 119.99352 * 2 1 3 5 5 C 1.52997 * 109.46955 * 185.00174 * 4 2 1 6 6 C 1.53784 * 113.61270 * 272.49663 * 5 4 2 7 7 C 1.53779 * 87.08045 * 220.02125 * 6 5 4 8 8 C 1.53779 * 87.08402 * 25.43458 * 7 6 5 9 9 N 1.46895 * 109.47284 * 239.99296 * 2 1 3 10 10 C 1.46907 * 110.99993 * 306.04760 * 9 2 1 11 11 C 1.46897 * 110.99796 * 70.00072 * 9 2 1 12 12 C 1.50700 * 109.46967 * 170.00029 * 11 9 2 13 13 H 1.08000 * 120.00077 * 359.97438 * 12 11 9 14 14 C 1.37888 * 120.00266 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99331 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00259 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47190 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47343 * 119.99778 * 16 14 12 19 19 H 1.48495 * 109.46873 * 239.99869 * 16 14 12 20 20 H 1.08999 * 109.47794 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47429 * 300.00993 * 1 2 3 22 22 H 1.09000 * 109.47161 * 60.00495 * 1 2 3 23 23 H 1.08998 * 109.46831 * 64.99902 * 4 2 1 24 24 H 1.09003 * 109.46913 * 304.99987 * 4 2 1 25 25 H 1.08994 * 112.91116 * 43.75034 * 5 4 2 26 26 H 1.09002 * 113.61478 * 334.57090 * 6 5 4 27 27 H 1.09004 * 113.61162 * 105.47268 * 6 5 4 28 28 H 1.09006 * 113.61307 * 270.88660 * 7 6 5 29 29 H 1.09007 * 113.61642 * 139.98417 * 7 6 5 30 30 H 1.08997 * 113.61646 * 220.02209 * 8 7 6 31 31 H 1.08998 * 113.69354 * 89.12517 * 8 7 6 32 32 H 1.09003 * 109.46778 * 59.99900 * 10 9 2 33 33 H 1.09003 * 109.46630 * 179.97438 * 10 9 2 34 34 H 1.09000 * 109.47140 * 300.00133 * 10 9 2 35 35 H 1.08998 * 109.47378 * 290.00154 * 11 9 2 36 36 H 1.09004 * 109.46984 * 50.00277 * 11 9 2 37 37 H 0.97000 * 119.99660 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5647 -0.6131 1.3139 6 6 4.2943 -1.7316 0.5511 7 6 5.2971 -1.7645 1.7164 8 6 4.1702 -1.2023 2.5989 9 7 2.0197 -0.6926 -1.1993 10 6 1.4343 -2.0357 -1.3075 11 6 1.7529 0.0970 -2.4089 12 6 2.4775 -0.5166 -3.5792 13 1 3.0765 -1.4042 -3.4384 14 6 2.3764 0.0556 -4.8297 15 7 1.6473 1.1366 -5.0010 16 14 3.2739 -0.7054 -6.2804 17 1 4.0191 -1.9071 -5.8264 18 1 2.2898 -1.0967 -7.3214 19 1 4.2268 0.2828 -6.8466 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.7515 -1.7714 1.2058 24 1 1.6052 -0.2615 2.1370 25 1 3.9297 0.3863 1.0777 26 1 3.7094 -2.6461 0.4524 27 1 4.7314 -1.4036 -0.3921 28 1 6.1357 -1.0796 1.5902 29 1 5.6095 -2.7708 1.9955 30 1 4.5071 -0.4471 3.3089 31 1 3.5507 -1.9711 3.0608 32 1 0.3490 -1.9550 -1.3691 33 1 1.8133 -2.5260 -2.2042 34 1 1.7058 -2.6222 -0.4298 35 1 0.6814 0.1051 -2.6087 36 1 2.1026 1.1187 -2.2603 37 1 1.5765 1.5394 -5.8806 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379413107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:11 Heat of formation + Delta-G solvation = -7.347220 kcal Electronic energy + Delta-G solvation = -14748.005329 eV Core-core repulsion = 12524.799715 eV Total energy + Delta-G solvation = -2223.205614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20806 -38.35460 -34.94841 -32.57373 -29.15243 -29.01906 -26.84790 -26.24586 -24.45768 -23.07862 -20.30771 -20.04265 -18.52442 -16.99036 -16.50169 -16.12116 -15.79924 -15.26472 -15.03542 -14.31220 -14.01238 -13.84883 -13.43759 -13.11612 -12.95175 -12.93315 -12.72939 -12.60792 -12.42442 -12.18919 -12.00590 -11.78110 -11.43391 -11.24791 -11.14659 -10.79253 -10.69775 -10.60216 -8.79552 -8.18799 -6.28237 1.39486 1.40216 1.53800 2.40521 3.13316 3.44631 3.79214 3.95587 4.00339 4.21694 4.23798 4.33468 4.53785 4.62520 4.69967 4.82894 4.86634 4.92431 4.96275 5.02760 5.05449 5.14845 5.16277 5.20573 5.23269 5.28584 5.42429 5.45105 5.49650 5.65948 5.68624 5.83067 6.11203 6.45044 6.77786 6.90674 7.41465 8.92211 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.008505 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.903061 B = 3291.513253 C = 3822.796104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.054 0.946 4 C -0.087 4.087 5 C -0.100 4.100 6 C -0.121 4.121 7 C -0.143 4.143 8 C -0.126 4.126 9 N -0.527 5.527 10 C 0.039 3.961 11 C 0.210 3.790 12 C -0.517 4.517 13 H 0.062 0.938 14 C -0.002 4.002 15 N -0.937 5.937 16 Si 0.967 3.033 17 H -0.263 1.263 18 H -0.279 1.279 19 H -0.280 1.280 20 H 0.062 0.938 21 H 0.076 0.924 22 H 0.026 0.974 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.013 0.987 33 H 0.049 0.951 34 H 0.078 0.922 35 H -0.038 1.038 36 H -0.006 1.006 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -5.729 13.796 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.035 4.035 3 H 0.073 0.927 4 C -0.125 4.125 5 C -0.118 4.118 6 C -0.159 4.159 7 C -0.181 4.181 8 C -0.163 4.163 9 N -0.250 5.250 10 C -0.110 4.110 11 C 0.084 3.916 12 C -0.556 4.556 13 H 0.080 0.920 14 C -0.199 4.199 15 N -0.578 5.578 16 Si 0.792 3.208 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.205 1.205 20 H 0.081 0.919 21 H 0.095 0.905 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.097 0.903 35 H -0.020 1.020 36 H 0.012 0.988 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.787 -5.668 13.718 15.102 hybrid contribution -0.724 0.335 -1.435 1.641 sum 2.063 -5.332 12.283 13.549 Atomic orbital electron populations 1.22378 0.97869 1.02025 1.01295 1.21830 0.92507 0.97545 0.91662 0.92730 1.21548 0.95126 1.00435 0.95351 1.22327 0.94499 0.98177 0.96800 1.22744 0.97794 0.98582 0.96757 1.22855 0.96877 1.01332 0.96996 1.22917 0.97403 1.00350 0.95671 1.62203 1.57778 1.02930 1.02122 1.22252 0.95987 0.91216 1.01511 1.19312 0.92449 0.92129 0.87723 1.21542 1.28981 1.11826 0.93216 0.91981 1.25919 0.96449 0.95508 1.02024 1.70104 1.41704 1.22046 1.23952 0.85363 0.78276 0.78588 0.78571 1.18713 1.20443 1.20530 0.91914 0.90512 0.95489 0.91419 0.90270 0.91447 0.90791 0.94150 0.90760 0.90922 0.91116 0.89326 0.96900 0.93232 0.90330 1.02019 0.98822 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.83 8.44 71.98 0.61 -5.22 16 2 C 0.07 2.60 2.30 44.92 0.10 2.71 16 3 H 0.05 2.10 7.93 -2.39 -0.02 2.09 16 4 C -0.09 -2.36 4.47 30.59 0.14 -2.23 16 5 C -0.10 -2.74 3.52 -10.27 -0.04 -2.77 16 6 C -0.12 -3.55 6.89 31.12 0.21 -3.33 16 7 C -0.14 -3.29 8.08 31.12 0.25 -3.04 16 8 C -0.13 -2.66 7.64 31.12 0.24 -2.43 16 9 N -0.53 -22.57 3.76 -901.60 -3.39 -25.97 16 10 C 0.04 1.48 8.60 127.69 1.10 2.58 16 11 C 0.21 11.45 4.29 85.56 0.37 11.81 16 12 C -0.52 -29.91 8.46 25.60 0.22 -29.70 16 13 H 0.06 3.53 7.12 -2.91 -0.02 3.51 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 15 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 16 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H 0.06 1.94 6.33 -2.39 -0.02 1.93 16 21 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.03 1.04 6.91 -2.39 -0.02 1.02 16 23 H 0.07 1.76 6.04 -2.39 -0.01 1.75 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 26 H 0.07 2.12 7.10 -2.39 -0.02 2.10 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.65 8.10 -2.39 -0.02 1.63 16 32 H 0.01 0.49 6.21 -2.39 -0.01 0.47 16 33 H 0.05 2.09 6.76 -2.39 -0.02 2.08 16 34 H 0.08 2.49 5.58 -2.39 -0.01 2.47 16 35 H -0.04 -2.24 7.06 -2.39 -0.02 -2.25 16 36 H -0.01 -0.38 7.93 -2.38 -0.02 -0.40 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -63.58 284.42 3.59 -60.00 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 1.01 Total: 7.39 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.66 Total: -31.25 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.11 Total: -83.42 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -63.58 3.59 -60.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379413107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.649 kcal (2) G-P(sol) polarization free energy of solvation -63.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds