Wall clock time and date at job start Mon Mar 30 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46997 * 2 1 4 4 N 1.46903 * 109.46765 * 239.99784 * 2 1 3 5 5 C 1.46897 * 110.99988 * 85.00211 * 4 2 1 6 6 C 1.52994 * 109.47347 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47627 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47627 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47263 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99953 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99721 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00271 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99591 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47156 * 59.99854 * 13 11 9 15 15 H 1.48499 * 109.46959 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47088 * 299.99407 * 13 11 9 17 17 C 1.53001 * 109.47016 * 119.99845 * 2 1 3 18 18 C 1.53000 * 117.50223 * 299.99980 * 17 2 1 19 19 C 1.52997 * 117.49889 * 231.37242 * 17 2 1 20 20 H 1.09005 * 109.47267 * 300.00032 * 1 2 3 21 21 H 1.08997 * 109.47409 * 59.99734 * 1 2 3 22 22 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 23 23 H 1.00897 * 111.00381 * 321.04647 * 4 2 1 24 24 H 1.09000 * 109.47158 * 300.00145 * 5 4 2 25 25 H 1.08998 * 109.47299 * 59.99238 * 5 4 2 26 26 H 1.09000 * 109.47239 * 300.00253 * 6 5 4 27 27 H 1.09004 * 109.47015 * 59.99604 * 6 5 4 28 28 H 1.09000 * 109.47122 * 300.00453 * 7 6 5 29 29 H 1.09004 * 109.47142 * 59.99809 * 7 6 5 30 30 H 1.09010 * 109.46880 * 299.99940 * 8 7 6 31 31 H 1.08998 * 109.47414 * 59.99594 * 8 7 6 32 32 H 0.97002 * 120.00318 * 179.97438 * 12 11 9 33 33 H 1.09002 * 115.55911 * 85.68670 * 17 2 1 34 34 H 1.08990 * 117.49990 * 145.01974 * 18 17 2 35 35 H 1.09004 * 117.49237 * 359.97438 * 18 17 2 36 36 H 1.08999 * 117.49685 * 0.02562 * 19 17 2 37 37 H 1.08999 * 117.52022 * 214.97106 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 2.0824 0.2225 -2.3469 6 6 2.5961 -0.5330 -3.5742 7 6 2.6609 0.4198 -4.7695 8 6 3.1739 -0.3358 -5.9969 9 6 3.2384 0.6030 -7.1740 10 1 2.9425 1.6352 -7.0583 11 6 3.6740 0.1437 -8.3989 12 7 4.0338 -1.1133 -8.5399 13 14 3.7532 1.3072 -9.8582 14 1 4.6748 2.4293 -9.5472 15 1 4.2513 0.5738 -11.0495 16 1 2.3969 1.8435 -10.1379 17 6 2.0400 -0.7212 1.2493 18 6 1.6357 -0.1495 2.6097 19 6 3.0742 0.0051 2.1116 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.4495 -1.4980 -1.4100 24 1 1.0870 0.6163 -2.5525 25 1 2.7587 1.0461 -2.1183 26 1 3.5915 -0.9264 -3.3683 27 1 1.9200 -1.3568 -3.8029 28 1 1.6653 0.8129 -4.9752 29 1 3.3367 1.2440 -4.5409 30 1 4.1696 -0.7291 -5.7914 31 1 2.4978 -1.1596 -6.2253 32 1 4.3399 -1.4365 -9.4017 33 1 2.1270 -1.8044 1.1644 34 1 1.4569 -0.8565 3.4196 35 1 1.0068 0.7408 2.6145 36 1 3.3909 0.9970 1.7892 37 1 3.8416 -0.5999 2.5944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385286619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:48 Heat of formation + Delta-G solvation = -8.091033 kcal Electronic energy + Delta-G solvation = -13501.133353 eV Core-core repulsion = 11277.895485 eV Total energy + Delta-G solvation = -2223.237868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.55616 -36.04895 -34.06804 -32.24779 -29.94329 -27.45883 -24.73934 -23.30824 -22.40851 -21.38206 -20.33207 -19.71386 -16.26747 -15.98468 -15.55323 -15.03617 -14.43334 -14.16279 -13.99679 -13.09185 -12.90248 -12.53846 -12.18475 -12.08765 -11.64276 -11.57355 -11.36754 -10.96420 -10.94159 -10.57646 -10.53857 -10.39873 -10.36212 -10.08801 -9.59018 -9.21853 -8.97565 -8.30898 -8.28027 -5.95020 -3.97283 3.35981 3.40048 3.42678 3.64427 4.16873 4.49860 4.63246 4.79378 4.97254 5.12378 5.20192 5.28858 5.40139 5.44329 5.47191 5.55748 5.59752 5.74086 5.83885 5.92551 5.97316 5.99794 6.15652 6.21694 6.33404 6.55751 6.87018 7.00977 7.11496 7.28539 7.49001 7.73931 7.90477 8.06254 8.49058 9.10087 9.66328 11.16330 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.077458 B = 0.004025 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.398846 B = 6954.170355 C = 7013.328438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.112 3.888 3 H 0.075 0.925 4 N -0.684 5.684 5 C 0.060 3.940 6 C -0.116 4.116 7 C -0.109 4.109 8 C 0.021 3.979 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.133 4.133 18 C -0.185 4.185 19 C -0.176 4.176 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.340 0.660 24 H 0.026 0.974 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.016 0.984 31 H 0.014 0.986 32 H 0.260 0.740 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 1.492 19.131 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.002 3.998 3 H 0.093 0.907 4 N -0.314 5.314 5 C -0.069 4.069 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.016 4.016 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.152 4.152 18 C -0.223 4.223 19 C -0.213 4.213 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.158 0.842 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.003 1.450 19.149 19.845 hybrid contribution -0.880 0.662 -1.076 1.540 sum -5.884 2.113 18.073 19.124 Atomic orbital electron populations 1.22473 0.97194 1.02209 1.02012 1.21093 0.92208 0.97178 0.89348 0.90678 1.60534 1.57139 1.09970 1.03795 1.22090 0.99071 0.95471 0.90231 1.21635 1.01381 0.98727 0.93603 1.21588 1.00076 0.97858 0.95185 1.19089 0.96263 0.95359 0.90890 1.21263 1.43539 0.96426 0.94696 0.92835 1.25034 0.95517 0.95090 0.98884 1.69956 1.44743 1.14401 1.24488 0.86669 0.78373 0.80974 0.82039 1.20257 1.21304 1.20292 1.22212 1.03035 0.99526 0.90384 1.22957 0.98498 1.03279 0.97556 1.22959 0.92239 1.02078 1.04053 0.92186 0.92585 0.92349 0.84227 0.95594 0.91412 0.91655 0.92787 0.93726 0.93471 0.96602 0.96741 0.92997 0.87663 0.89040 0.89059 0.88976 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.00 37.16 0.33 -1.40 16 2 C 0.11 1.22 2.82 -67.71 -0.19 1.03 16 3 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 4 N -0.68 -8.81 6.25 -106.73 -0.67 -9.47 16 5 C 0.06 0.87 5.48 -3.83 -0.02 0.85 16 6 C -0.12 -2.03 5.47 -26.74 -0.15 -2.17 16 7 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 8 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 9 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 13 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.13 -1.33 5.45 -90.62 -0.49 -1.82 16 18 C -0.19 -1.56 9.74 -26.73 -0.26 -1.82 16 19 C -0.18 -1.65 10.18 -26.73 -0.27 -1.92 16 20 H 0.06 0.51 7.29 -51.93 -0.38 0.13 16 21 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 22 H 0.06 0.54 8.13 -51.92 -0.42 0.12 16 23 H 0.34 4.12 8.47 -39.29 -0.33 3.79 16 24 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 25 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.72 7.61 -51.93 -0.40 0.33 16 36 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 302.61 15.07 4.56 4.56 Total: -1.00 -30.18 302.61 -9.01 -39.19 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.88 Total: -1.24 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -1.74 Total: -23.23 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.07 Total: -36.30 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.18 -9.01 -39.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385286619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.094 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds