Wall clock time and date at job start Mon Mar 30 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46997 * 2 1 4 4 N 1.46903 * 109.46765 * 239.99784 * 2 1 3 5 5 C 1.46897 * 110.99988 * 85.00211 * 4 2 1 6 6 C 1.52994 * 109.47347 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47627 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47627 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47263 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99953 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99721 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00271 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99591 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47156 * 59.99854 * 13 11 9 15 15 H 1.48499 * 109.46959 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47088 * 299.99407 * 13 11 9 17 17 C 1.53001 * 109.47016 * 119.99845 * 2 1 3 18 18 C 1.53000 * 117.50223 * 299.99980 * 17 2 1 19 19 C 1.52997 * 117.49889 * 231.37242 * 17 2 1 20 20 H 1.09005 * 109.47267 * 300.00032 * 1 2 3 21 21 H 1.08997 * 109.47409 * 59.99734 * 1 2 3 22 22 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 23 23 H 1.00897 * 111.00381 * 321.04647 * 4 2 1 24 24 H 1.09000 * 109.47158 * 300.00145 * 5 4 2 25 25 H 1.08998 * 109.47299 * 59.99238 * 5 4 2 26 26 H 1.09000 * 109.47239 * 300.00253 * 6 5 4 27 27 H 1.09004 * 109.47015 * 59.99604 * 6 5 4 28 28 H 1.09000 * 109.47122 * 300.00453 * 7 6 5 29 29 H 1.09004 * 109.47142 * 59.99809 * 7 6 5 30 30 H 1.09010 * 109.46880 * 299.99940 * 8 7 6 31 31 H 1.08998 * 109.47414 * 59.99594 * 8 7 6 32 32 H 0.97002 * 120.00318 * 179.97438 * 12 11 9 33 33 H 1.09002 * 115.55911 * 85.68670 * 17 2 1 34 34 H 1.08990 * 117.49990 * 145.01974 * 18 17 2 35 35 H 1.09004 * 117.49237 * 359.97438 * 18 17 2 36 36 H 1.08999 * 117.49685 * 0.02562 * 19 17 2 37 37 H 1.08999 * 117.52022 * 214.97106 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 2.0824 0.2225 -2.3469 6 6 2.5961 -0.5330 -3.5742 7 6 2.6609 0.4198 -4.7695 8 6 3.1739 -0.3358 -5.9969 9 6 3.2384 0.6030 -7.1740 10 1 2.9425 1.6352 -7.0583 11 6 3.6740 0.1437 -8.3989 12 7 4.0338 -1.1133 -8.5399 13 14 3.7532 1.3072 -9.8582 14 1 4.6748 2.4293 -9.5472 15 1 4.2513 0.5738 -11.0495 16 1 2.3969 1.8435 -10.1379 17 6 2.0400 -0.7212 1.2493 18 6 1.6357 -0.1495 2.6097 19 6 3.0742 0.0051 2.1116 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.4495 -1.4980 -1.4100 24 1 1.0870 0.6163 -2.5525 25 1 2.7587 1.0461 -2.1183 26 1 3.5915 -0.9264 -3.3683 27 1 1.9200 -1.3568 -3.8029 28 1 1.6653 0.8129 -4.9752 29 1 3.3367 1.2440 -4.5409 30 1 4.1696 -0.7291 -5.7914 31 1 2.4978 -1.1596 -6.2253 32 1 4.3399 -1.4365 -9.4017 33 1 2.1270 -1.8044 1.1644 34 1 1.4569 -0.8565 3.4196 35 1 1.0068 0.7408 2.6145 36 1 3.3909 0.9970 1.7892 37 1 3.8416 -0.5999 2.5944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385286619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:48 Heat of formation + Delta-G solvation = -25.714899 kcal Electronic energy + Delta-G solvation = -13501.897582 eV Core-core repulsion = 11277.895485 eV Total energy + Delta-G solvation = -2224.002096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41076 -37.27447 -35.72452 -34.07675 -31.31044 -28.97302 -26.29212 -24.52132 -23.11526 -22.78489 -21.89715 -20.78625 -18.42973 -16.88737 -16.76730 -16.51749 -16.07515 -15.22024 -15.06370 -14.48311 -14.14277 -14.02166 -13.55237 -13.32212 -13.17626 -12.81205 -12.70683 -12.36131 -12.25030 -12.16443 -12.10425 -11.78101 -11.38760 -11.33119 -11.23898 -10.95803 -10.78526 -10.54977 -9.29422 -8.19677 -6.31520 1.39501 1.43198 1.51155 2.41118 2.87739 3.12805 3.25654 3.84293 4.04393 4.11058 4.18888 4.28214 4.33883 4.41974 4.53591 4.58221 4.62906 4.76428 4.83395 4.88497 4.94230 5.00504 5.08874 5.22995 5.25560 5.27886 5.30735 5.36361 5.41028 5.55005 5.77905 5.86774 6.16107 6.25859 6.50403 6.85889 7.37781 8.92090 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.077458 B = 0.004025 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.398846 B = 6954.170355 C = 7013.328438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 H 0.069 0.931 4 N -0.692 5.692 5 C 0.073 3.927 6 C -0.105 4.105 7 C -0.097 4.097 8 C 0.023 3.977 9 C -0.547 4.547 10 H 0.060 0.940 11 C -0.003 4.003 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.266 1.266 17 C -0.145 4.145 18 C -0.169 4.169 19 C -0.185 4.185 20 H 0.073 0.927 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.344 0.656 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.050 0.950 30 H -0.012 1.012 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 2.669 19.857 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.003 3.997 3 H 0.088 0.912 4 N -0.322 5.322 5 C -0.056 4.056 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.015 4.015 9 C -0.585 4.585 10 H 0.078 0.922 11 C -0.201 4.201 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.164 4.164 18 C -0.206 4.206 19 C -0.222 4.222 20 H 0.092 0.908 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.162 0.838 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.779 2.633 19.898 20.887 hybrid contribution -0.624 0.249 -1.269 1.436 sum -6.404 2.883 18.629 19.909 Atomic orbital electron populations 1.22413 0.96035 1.02561 1.02334 1.21112 0.93118 0.96724 0.88719 0.91229 1.60488 1.57945 1.10024 1.03788 1.21844 0.99186 0.95128 0.89483 1.21461 1.01022 0.98168 0.93680 1.21399 0.99986 0.97919 0.94210 1.19023 0.94389 0.94939 0.93101 1.21729 1.43802 0.97113 0.95861 0.92165 1.26035 0.94811 0.96909 1.02303 1.70097 1.45416 1.16498 1.25487 0.85474 0.78998 0.78649 0.77768 1.19114 1.20753 1.19053 1.22162 1.04206 0.99227 0.90786 1.23025 0.97577 1.03437 0.96573 1.23026 0.92998 1.01924 1.04225 0.90841 0.93254 0.91982 0.83770 0.94846 0.91469 0.92773 0.92808 0.93082 0.93157 0.99314 0.99179 0.92744 0.88139 0.87828 0.88279 0.89271 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.00 71.98 0.65 -2.37 16 2 C 0.11 2.29 2.82 44.92 0.13 2.42 16 3 H 0.07 1.49 7.56 -2.39 -0.02 1.47 16 4 N -0.69 -17.04 6.25 -491.58 -3.07 -20.12 16 5 C 0.07 2.03 5.48 86.30 0.47 2.51 16 6 C -0.11 -3.68 5.47 30.59 0.17 -3.51 16 7 C -0.10 -4.11 5.15 30.59 0.16 -3.95 16 8 C 0.02 1.24 4.97 29.85 0.15 1.39 16 9 C -0.55 -32.16 9.11 25.60 0.23 -31.92 16 10 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 11 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 12 N -0.93 -58.38 13.29 21.45 0.28 -58.09 16 13 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 C -0.15 -2.68 5.45 -10.79 -0.06 -2.73 16 18 C -0.17 -2.45 9.74 30.60 0.30 -2.15 16 19 C -0.18 -3.19 10.18 30.60 0.31 -2.88 16 20 H 0.07 1.07 7.29 -2.38 -0.02 1.05 16 21 H 0.05 0.92 7.45 -2.39 -0.02 0.90 16 22 H 0.06 1.03 8.13 -2.38 -0.02 1.01 16 23 H 0.34 7.97 8.47 -89.70 -0.76 7.21 16 24 H 0.03 0.89 7.44 -2.39 -0.02 0.88 16 25 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 30 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.29 7.61 -2.38 -0.02 1.28 16 36 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.32 302.61 2.45 -61.87 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.25 Total: 12.21 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 2.97 Total: -42.92 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.79 Total: -78.21 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.32 2.45 -61.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385286619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.151 kcal (2) G-P(sol) polarization free energy of solvation -64.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds