Wall clock time and date at job start Mon Mar 30 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 112.91153 * 2 1 4 4 C 1.53777 * 113.61386 * 228.75335 * 2 1 3 5 5 C 1.53786 * 87.08338 * 220.01861 * 4 2 1 6 6 C 1.53777 * 113.61537 * 131.25394 * 2 1 3 7 7 H 1.09005 * 113.69058 * 25.41916 * 6 2 1 8 8 N 1.46898 * 113.61785 * 254.52926 * 6 2 1 9 9 C 1.46904 * 111.00074 * 157.99616 * 8 6 2 10 10 C 1.53000 * 109.46772 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.46783 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.46873 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46700 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 H 1.09000 * 109.47021 * 288.74881 * 1 2 3 22 22 H 1.09006 * 109.46970 * 48.74028 * 1 2 3 23 23 H 1.08992 * 109.47573 * 168.74289 * 1 2 3 24 24 H 1.09004 * 113.61749 * 105.47268 * 4 2 1 25 25 H 1.09004 * 113.69321 * 334.57691 * 4 2 1 26 26 H 1.08995 * 113.61463 * 270.88780 * 5 4 2 27 27 H 1.08996 * 113.61397 * 139.97970 * 5 4 2 28 28 H 1.00901 * 110.99793 * 281.95177 * 8 6 2 29 29 H 1.08994 * 109.47140 * 60.00004 * 9 8 6 30 30 H 1.08997 * 109.46845 * 300.00295 * 9 8 6 31 31 H 1.08994 * 109.47548 * 59.99931 * 10 9 8 32 32 H 1.09003 * 109.47183 * 299.99245 * 10 9 8 33 33 H 1.09004 * 109.47180 * 59.99720 * 11 10 9 34 34 H 1.08997 * 109.46702 * 299.99891 * 11 10 9 35 35 H 1.09004 * 109.47139 * 60.00071 * 12 11 10 36 36 H 1.08997 * 109.47675 * 299.99671 * 12 11 10 37 37 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9544 1.0040 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 3.1924 -1.3136 -0.0001 6 6 2.1460 -0.9291 1.0593 7 1 1.4954 -1.7540 1.3500 8 7 2.7107 -0.2146 2.2119 9 6 2.8016 -1.0952 3.3842 10 6 3.3923 -0.3172 4.5618 11 6 3.4875 -1.2346 5.7827 12 6 4.0788 -0.4568 6.9601 13 6 4.1719 -1.3602 8.1626 14 1 3.8428 -2.3866 8.0940 15 6 4.6774 -0.8765 9.3508 16 7 4.7592 -1.6650 10.4002 17 14 5.2461 0.8988 9.4699 18 1 4.1090 1.7556 9.8921 19 1 5.7405 1.3503 8.1444 20 1 6.3409 1.0021 10.4679 21 1 -0.3633 0.3303 0.9731 22 1 -0.3633 0.6778 -0.7726 23 1 -0.3634 -1.0078 -0.2006 24 1 2.5650 -0.3987 -1.9146 25 1 1.4954 -1.7538 -1.3502 26 1 4.0710 -0.6687 0.0000 27 1 3.4443 -2.3741 -0.0002 28 1 3.6110 0.1812 1.9863 29 1 3.4430 -1.9451 3.1514 30 1 1.8063 -1.4528 3.6480 31 1 2.7505 0.5324 4.7945 32 1 4.3876 0.0406 4.2982 33 1 4.1295 -2.0841 5.5496 34 1 2.4924 -1.5928 6.0463 35 1 3.4370 0.3929 7.1932 36 1 5.0739 -0.0989 6.6961 37 1 5.1145 -1.3246 11.2361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385305379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:49 Heat of formation + Delta-G solvation = -11.959711 kcal Electronic energy + Delta-G solvation = -13597.711868 eV Core-core repulsion = 11374.306241 eV Total energy + Delta-G solvation = -2223.405627 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51431 -35.84382 -33.53664 -31.83103 -29.89130 -28.53520 -25.01310 -23.40088 -22.87542 -21.35311 -20.04726 -19.48164 -16.64593 -16.00795 -15.44560 -14.88875 -14.23537 -14.01088 -13.85908 -13.40334 -13.06667 -12.72793 -12.52334 -12.00156 -11.87345 -11.78405 -11.62846 -11.12058 -11.00209 -10.74953 -10.57808 -10.40377 -10.37286 -9.83987 -9.64496 -9.40517 -9.11208 -8.49518 -8.29829 -6.00324 -3.97787 3.34262 3.41109 3.45842 4.13993 4.39823 4.49381 4.53487 4.64481 4.80124 5.27221 5.31644 5.34210 5.38011 5.45146 5.51842 5.56339 5.63766 5.71882 5.78963 5.86228 5.91808 6.07793 6.11776 6.18307 6.31535 6.41829 6.70782 6.80611 6.95827 7.17044 7.38106 7.42706 7.51356 7.85129 8.59164 9.05039 9.62766 11.13336 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.066807 B = 0.004353 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.020201 B = 6431.323891 C = 6505.021210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.138 4.138 5 C -0.173 4.173 6 C 0.071 3.929 7 H 0.095 0.905 8 N -0.681 5.681 9 C 0.059 3.941 10 C -0.119 4.119 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.520 4.520 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.266 1.266 20 H -0.288 1.288 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.340 0.660 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.011 0.989 36 H 0.014 0.986 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 2.939 -21.764 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.109 0.891 4 C -0.176 4.176 5 C -0.212 4.212 6 C -0.040 4.040 7 H 0.113 0.887 8 N -0.311 5.311 9 C -0.070 4.070 10 C -0.157 4.157 11 C -0.139 4.139 12 C -0.052 4.052 13 C -0.558 4.558 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.546 5.546 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.190 1.190 20 H -0.215 1.215 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.032 0.968 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.663 3.205 -21.359 22.329 hybrid contribution 1.119 0.282 -0.016 1.154 sum -4.544 3.487 -21.375 22.130 Atomic orbital electron populations 1.21687 0.94911 1.01259 1.01870 1.22678 0.95639 0.98914 0.95007 0.89072 1.22853 0.98371 0.99656 0.96723 1.23635 0.97853 1.01575 0.98146 1.23147 0.96319 0.95836 0.88679 0.88685 1.60444 1.30603 1.35324 1.04691 1.22075 1.00565 0.94081 0.90240 1.21680 1.00159 0.99301 0.94547 1.21417 1.00693 0.97850 0.93982 1.19572 0.95556 0.96046 0.93994 1.21200 1.41665 0.98929 0.93965 0.91144 1.25056 0.95308 0.97613 0.95692 1.69925 1.46863 1.35931 1.01833 0.86752 0.78667 0.85655 0.78054 1.20296 1.19022 1.21462 0.92120 0.92992 0.92998 0.91572 0.90257 0.90094 0.91661 0.84145 0.95442 0.91241 0.91693 0.92816 0.93071 0.92854 0.97078 0.96782 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.71 37.16 0.36 -0.86 16 2 C -0.10 -0.96 4.16 -89.81 -0.37 -1.33 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.14 -1.12 7.63 -25.92 -0.20 -1.32 16 5 C -0.17 -1.57 7.71 -25.91 -0.20 -1.77 16 6 C 0.07 0.74 3.71 -66.90 -0.25 0.49 16 7 H 0.10 1.03 7.85 -51.93 -0.41 0.62 16 8 N -0.68 -8.35 6.61 -105.87 -0.70 -9.05 16 9 C 0.06 0.82 5.55 -3.82 -0.02 0.80 16 10 C -0.12 -1.95 5.48 -26.73 -0.15 -2.10 16 11 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 12 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 13 C -0.52 -15.26 9.66 -34.44 -0.33 -15.60 16 14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.56 13.96 55.43 0.77 -27.78 16 17 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.42 7.95 -51.93 -0.41 0.01 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.60 7.97 -51.93 -0.41 0.19 16 26 H 0.08 0.72 7.83 -51.93 -0.41 0.31 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.34 3.90 8.22 -39.29 -0.32 3.57 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 36 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 297.49 15.07 4.48 4.48 Total: -1.00 -30.58 297.49 -8.58 -39.17 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.97 Total: -1.90 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -1.51 Total: -22.51 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.07 Total: -36.83 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.58 -8.58 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.206 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds