Wall clock time and date at job start Mon Mar 30 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 112.91237 * 2 1 4 4 C 1.53783 * 113.61368 * 228.74627 * 2 1 3 5 5 C 1.53783 * 87.08073 * 270.88432 * 4 2 1 6 6 C 1.53774 * 87.08151 * 334.56632 * 5 4 2 7 7 H 1.09000 * 113.69336 * 270.87159 * 6 5 4 8 8 N 1.46901 * 113.61448 * 139.97977 * 6 5 4 9 9 C 1.46905 * 110.99870 * 107.50193 * 8 6 5 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47360 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47360 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47393 * 180.02562 * 12 11 10 14 14 H 1.08010 * 119.99765 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00736 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99566 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00463 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47101 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46859 * 120.00133 * 17 15 13 20 20 H 1.48499 * 109.47506 * 240.00180 * 17 15 13 21 21 H 1.09004 * 109.47112 * 288.75106 * 1 2 3 22 22 H 1.09001 * 109.47251 * 48.74999 * 1 2 3 23 23 H 1.08998 * 109.47224 * 168.74898 * 1 2 3 24 24 H 1.09001 * 113.61235 * 25.43501 * 4 2 1 25 25 H 1.09007 * 113.61463 * 156.25269 * 4 2 1 26 26 H 1.09002 * 113.61087 * 220.01700 * 5 4 2 27 27 H 1.09003 * 113.61375 * 89.11830 * 5 4 2 28 28 H 1.00901 * 111.00067 * 231.45369 * 8 6 5 29 29 H 1.09001 * 109.46798 * 300.00327 * 9 8 6 30 30 H 1.08998 * 109.46961 * 60.00043 * 9 8 6 31 31 H 1.09001 * 109.47393 * 299.99719 * 10 9 8 32 32 H 1.08998 * 109.47408 * 60.00073 * 10 9 8 33 33 H 1.09001 * 109.46514 * 300.00105 * 11 10 9 34 34 H 1.08998 * 109.46924 * 59.99625 * 11 10 9 35 35 H 1.09001 * 109.47393 * 299.99567 * 12 11 10 36 36 H 1.08998 * 109.47408 * 59.99921 * 12 11 10 37 37 H 0.97002 * 119.99740 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1459 -0.9291 -1.0593 5 6 2.0928 -2.0426 0.0001 6 6 2.1460 -0.9291 1.0593 7 1 3.1585 -0.6490 1.3500 8 7 1.2679 -1.1710 2.2119 9 6 2.0495 -1.5285 3.4033 10 6 1.1027 -1.7729 4.5800 11 6 1.9168 -2.1447 5.8210 12 6 0.9700 -2.3885 6.9978 13 6 1.7718 -2.7540 8.2203 14 1 2.8491 -2.8075 8.1634 15 6 1.1305 -3.0201 9.4114 16 7 -0.1813 -2.9554 9.4805 17 14 2.1244 -3.4739 10.9265 18 1 3.5701 -3.4778 10.5872 19 1 1.8711 -2.4799 12.0005 20 1 1.7221 -4.8238 11.3965 21 1 -0.3633 0.3304 0.9732 22 1 -0.3634 0.6776 -0.7726 23 1 -0.3633 -1.0079 -0.2005 24 1 1.4944 -1.1087 -1.9145 25 1 3.1585 -0.6491 -1.3500 26 1 2.9716 -2.6875 0.0000 27 1 1.1567 -2.6010 0.0001 28 1 0.6793 -0.3716 2.3922 29 1 2.6221 -2.4343 3.2038 30 1 2.7315 -0.7142 3.6482 31 1 0.5299 -0.8673 4.7796 32 1 0.4211 -2.5874 4.3348 33 1 2.4900 -3.0501 5.6216 34 1 2.5981 -1.3299 6.0660 35 1 0.3972 -1.4827 7.1970 36 1 0.2884 -3.2030 6.7531 37 1 -0.6326 -3.1423 10.3186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385305381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:52 Heat of formation + Delta-G solvation = -12.235597 kcal Electronic energy + Delta-G solvation = -13639.894070 eV Core-core repulsion = 11416.476480 eV Total energy + Delta-G solvation = -2223.417590 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57749 -35.71767 -33.47140 -31.66777 -29.49971 -28.12150 -24.88429 -23.83229 -23.20311 -21.32791 -20.03043 -18.42351 -16.28218 -16.21910 -15.76955 -14.97385 -14.58589 -14.34550 -13.44223 -12.87864 -12.66640 -12.41598 -12.34167 -12.24740 -11.78657 -11.59703 -11.40471 -11.01636 -10.80908 -10.58672 -10.47391 -10.40712 -10.25908 -10.16998 -9.59336 -9.20872 -8.94950 -8.31805 -8.29021 -5.95403 -3.97435 3.33482 3.40645 3.45135 4.24288 4.40236 4.48831 4.51840 4.80453 4.82876 5.30614 5.38789 5.40132 5.45710 5.51943 5.57905 5.63145 5.70675 5.80188 5.90759 5.96543 6.06856 6.18399 6.23672 6.28685 6.40320 6.56701 6.87403 7.01493 7.14382 7.30812 7.49675 7.74368 7.90387 8.06100 8.49088 9.10353 9.66348 11.16030 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.082536 B = 0.004165 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.164875 B = 6720.563206 C = 6906.670914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 H 0.070 0.930 4 C -0.140 4.140 5 C -0.126 4.126 6 C 0.060 3.940 7 H 0.069 0.931 8 N -0.678 5.678 9 C 0.058 3.942 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.339 0.661 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 5.254 -18.920 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.138 4.138 3 H 0.088 0.912 4 C -0.178 4.178 5 C -0.164 4.164 6 C -0.050 4.050 7 H 0.086 0.914 8 N -0.310 5.310 9 C -0.071 4.071 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.995 4.581 -18.957 19.731 hybrid contribution 0.923 0.612 1.208 1.638 sum 3.918 5.192 -17.749 18.904 Atomic orbital electron populations 1.21465 0.93261 1.02242 1.01576 1.22633 0.96684 0.97890 0.96588 0.91184 1.22841 1.00697 0.97376 0.96856 1.23012 1.02363 0.96310 0.94718 1.23064 0.95454 0.96482 0.90029 0.91353 1.60710 1.22685 1.42725 1.04840 1.22123 0.95614 0.99603 0.89720 1.21635 0.98214 1.01497 0.93989 1.21588 0.98762 0.99593 0.94762 1.19100 0.94372 0.96878 0.91339 1.21337 0.93299 1.46267 0.94828 0.92734 1.25038 0.94878 0.95701 0.98968 1.69984 1.07477 1.49919 1.26207 0.86556 0.80386 0.78053 0.83120 1.19775 1.21054 1.21018 0.92098 0.92926 0.91864 0.91309 0.90526 0.92111 0.89314 0.84097 0.91390 0.95728 0.92856 0.91690 0.93471 0.93737 0.96738 0.96592 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.98 37.15 0.33 -0.83 16 2 C -0.12 -1.11 4.43 -89.81 -0.40 -1.51 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.14 -1.21 7.64 -25.92 -0.20 -1.41 16 5 C -0.13 -1.30 7.53 -25.92 -0.20 -1.50 16 6 C 0.06 0.67 4.03 -66.90 -0.27 0.40 16 7 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 8 N -0.68 -8.79 6.07 -105.87 -0.64 -9.43 16 9 C 0.06 0.86 5.53 -3.82 -0.02 0.84 16 10 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 12 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 13 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 14 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H 0.06 0.57 6.72 -51.93 -0.35 0.22 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.61 7.34 -51.93 -0.38 0.23 16 24 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.99 7.65 -51.93 -0.40 0.59 16 28 H 0.34 4.17 6.93 -39.29 -0.27 3.90 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 296.88 15.07 4.47 4.47 Total: -1.00 -30.18 296.88 -8.88 -39.06 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.84 Total: -2.12 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.58 Total: -22.19 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.09 Total: -36.26 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.18 -8.88 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.822 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds